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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE AND RNA BINDING PROPERTIES OF THE RRM/ALKB IN HUMAN ABH8, AN ENZYME CATALYZING TRNA HYPERMODIFICATION, STRUCTURAL GENOMICS CONSORTIUM TARGET HR5601B
Keywords STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOM CONSORTIUM, NESG, ALPHA-BETA TWO DOMAIN PROTEIN CONTAINING STRUCTURE MOTIF, TRNA MODIFYING ENZYME, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3THT     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  A 302 2393 0
2  Protein   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  B 312 2462 0
3  Protein   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  C 295 2344 0
4  Protein   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  D 302 2411 0
5  Ligand   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  A 3 0 12
6  Ligand   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  B 3 0 12
7  Ligand   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  C 3 0 12
8  Ligand   ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8  D 3 0 12
9 Water     100 0 100
total       1323 9610 148

Proteins
Unit 1 THR28 LEU29 LEU30 ARG31 HIS32 GLU33 GLY34 ILE35 GLU36 THR37 VAL38 SER39 TYR40 ALA41 THR42 GLN43 SER44 LEU45 VAL46 VAL47 ALA48 ASN49 GLY50 GLY51 LEU52 GLY53 ASN54 GLY55 VAL56 SER57 ARG58 ASN59 GLN60 LEU61 LEU62 PRO63 VAL64 LEU65 GLU66 LYS67 CYS68 GLY69 LEU70 VAL71 ASP72 ALA73 LEU74 LEU75 MET76 PRO77 PRO78 ASN79 LYS80 PRO81 TYR82 SER83 PHE84 ALA85 ARG86 TYR87 ARG88 THR89 THR90 GLU91 GLU92 SER93 LYS94 ARG95 ALA96 TYR97 VAL98 THR99 LEU100 ASN101 GLY102 LYS103 GLU104 VAL105 VAL106 ASP107 ASP108 LEU109 GLY110 GLN111 LYS112 ILE113 THR114 LEU115 TYR116 LEU117 ASN118 PHE119 VAL120 GLU121 LYS122 VAL123 GLN124 TRP125 LYS126 GLU127 LEU128 ARG129 PRO130 GLN131 ALA132 LEU133 PRO134 PRO135 GLY136 LEU137 MET138 VAL139 VAL140 GLU141 GLU142 ILE143 ILE144 SER145 SER146 GLU147 GLU148 GLU149 LYS150 MET151 LEU152 LEU153 GLU154 SER155 VAL156 ASP157 ARG174 ARG175 VAL176 LYS177 HIS178 PHE179 GLY180 GLY199 LEU200 PRO201 ASP202 ILE203 CYS204 GLU205 SER206 PHE207 LEU208 GLU209 LYS210 TRP211 LEU212 ARG213 LYS214 GLY215 TYR216 ILE217 LYS218 HIS219 LYS220 PRO221 ASP222 GLN223 MET224 THR225 ILE226 ASN227 GLN228 TYR229 GLU230 PRO231 GLY232 GLN233 GLY234 ILE235 PRO236 ALA237 HIS238 ILE239 ASP240 THR241 HIS242 SER243 ALA244 PHE245 GLU246 ASP247 GLU248 ILE249 VAL250 SER251 LEU252 SER253 LEU254 GLY255 SER256 GLU257 ILE258 VAL259 MET260 ASP261 PHE262 LYS263 HIS264 PRO265 ASP266 GLY267 ILE268 ALA269 VAL270 PRO271 VAL272 MET273 LEU274 PRO275 ARG276 ARG277 SER278 LEU279 LEU280 VAL281 MET282 THR283 GLY284 GLU285 SER286 ARG287 TYR288 LEU289 TRP290 THR291 HIS292 GLY293 ILE294 THR295 CYS296 ARG297 LYS298 PHE299 ASP300 THR301 VAL302 GLN303 ALA304 SER305 GLU306 SER307 LEU308 LYS309 SER310 GLY311 ILE312 ILE313 THR314 SER315 ASP316 VAL317 GLY318 ASP319 LEU320 THR321 LEU322 SER323 LYS324 ARG325 GLY326 LEU327 ARG328 THR329 SER330 PHE331 THR332 PHE333 ARG334 LYS335 VAL336 ARG337 GLN338 THR339 PRO340 CYS341 ASN342 CYS343 SER344 TYR345 PRO346 LEU347 VAL348 CYS349 ASP350 SER351 GLN352 ARG353 LYS354 GLU355 ASN356 LEU357 TYR358 PHE359 GLN360 GLY361 LEU362 GLU363
Unit 2 THR28 LEU29 LEU30 ARG31 HIS32 GLU33 GLY34 ILE35 GLU36 THR37 VAL38 SER39 TYR40 ALA41 THR42 GLN43 SER44 LEU45 VAL46 VAL47 ALA48 ASN49 GLY50 GLY51 LEU52 GLY53 ASN54 GLY55 VAL56 SER57 ARG58 ASN59 GLN60 LEU61 LEU62 PRO63 VAL64 LEU65 GLU66 LYS67 CYS68 GLY69 LEU70 VAL71 ASP72 ALA73 LEU74 LEU75 MET76 PRO77 PRO78 ASN79 LYS80 PRO81 TYR82 SER83 PHE84 ALA85 ARG86 TYR87 ARG88 THR89 THR90 GLU91 GLU92 SER93 LYS94 ARG95 ALA96 TYR97 VAL98 THR99 LEU100 ASN101 GLY102 LYS103 GLU104 VAL105 VAL106 ASP107 ASP108 LEU109 GLY110 GLN111 LYS112 ILE113 THR114 LEU115 TYR116 LEU117 ASN118 PHE119 VAL120 GLU121 LYS122 VAL123 GLN124 TRP125 LYS126 GLU127 LEU128 ARG129 PRO130 GLN131 ALA132 LEU133 PRO134 PRO135 GLY136 LEU137 MET138 VAL139 VAL140 GLU141 GLU142 ILE143 ILE144 SER145 SER146 GLU147 GLU148 GLU149 LYS150 MET151 LEU152 LEU153 GLU154 SER155 VAL156 ASP157 TRP158 ARG174 ARG175 VAL176 LYS177 HIS178 PHE179 GLY180 TYR181 GLU182 PHE183 ASN189 VAL190 ASP191 LYS192 ASP193 LYS194 PRO195 LEU196 SER197 GLY198 GLY199 LEU200 PRO201 ASP202 ILE203 CYS204 GLU205 SER206 PHE207 LEU208 GLU209 LYS210 TRP211 LEU212 ARG213 LYS214 GLY215 TYR216 ILE217 LYS218 HIS219 LYS220 PRO221 ASP222 GLN223 MET224 THR225 ILE226 ASN227 GLN228 TYR229 GLU230 PRO231 GLY232 GLN233 GLY234 ILE235 PRO236 ALA237 HIS238 ILE239 ASP240 THR241 HIS242 SER243 ALA244 PHE245 GLU246 ASP247 GLU248 ILE249 VAL250 SER251 LEU252 SER253 LEU254 GLY255 SER256 GLU257 ILE258 VAL259 MET260 ASP261 PHE262 LYS263 HIS264 PRO265 ASP266 GLY267 ILE268 ALA269 VAL270 PRO271 VAL272 MET273 LEU274 PRO275 ARG276 ARG277 SER278 LEU279 LEU280 VAL281 MET282 THR283 GLY284 GLU285 SER286 ARG287 TYR288 LEU289 TRP290 THR291 HIS292 GLY293 ILE294 THR295 CYS296 ARG297 LYS298 PHE299 ASP300 THR301 VAL302 GLN303 ALA304 LEU308 LYS309 SER310 GLY311 ILE312 ILE313 THR314 SER315 ASP316 VAL317 GLY318 ASP319 LEU320 THR321 LEU322 SER323 LYS324 ARG325 GLY326 LEU327 ARG328 THR329 SER330 PHE331 THR332 PHE333 ARG334 LYS335 VAL336 ARG337 GLN338 THR339 PRO340 CYS341 ASN342 CYS343 SER344 TYR345 PRO346 LEU347 VAL348 CYS349 ASP350 SER351 GLN352 ARG353 LYS354 GLU355 ASN356 LEU357 TYR358 PHE359 GLN360 GLY361 LEU362
Unit 3 THR28 LEU29 LEU30 ARG31 HIS32 GLU33 GLY34 ILE35 GLU36 THR37 VAL38 SER39 TYR40 ALA41 THR42 GLN43 SER44 LEU45 VAL46 VAL47 ALA48 ASN49 GLY50 GLY51 LEU52 GLY53 ASN54 GLY55 VAL56 SER57 ARG58 ASN59 GLN60 LEU61 LEU62 PRO63 VAL64 LEU65 GLU66 LYS67 CYS68 GLY69 LEU70 VAL71 ASP72 ALA73 LEU74 LEU75 MET76 PRO77 PRO78 ASN79 LYS80 PRO81 TYR82 SER83 PHE84 ALA85 ARG86 TYR87 ARG88 THR89 THR90 GLU91 GLU92 SER93 LYS94 ARG95 ALA96 TYR97 VAL98 THR99 LEU100 ASN101 GLY102 LYS103 GLU104 VAL105 VAL106 ASP107 ASP108 LEU109 GLY110 GLN111 LYS112 ILE113 THR114 LEU115 TYR116 LEU117 ASN118 PHE119 VAL120 GLU121 LYS122 VAL123 GLN124 TRP125 LYS126 GLU127 LEU128 ARG129 PRO130 GLN131 ALA132 LEU133 PRO134 PRO135 GLY136 LEU137 MET138 VAL139 VAL140 GLU141 GLU142 ILE143 ILE144 SER145 SER146 GLU147 GLU148 GLU149 LYS150 MET151 LEU152 LEU153 GLU154 SER155 VAL156 ASP157 TRP158 ARG174 ARG175 VAL176 LYS177 HIS178 PHE179 GLY180 TYR181 GLY199 LEU200 PRO201 ASP202 ILE203 CYS204 GLU205 SER206 PHE207 LEU208 GLU209 LYS210 TRP211 LEU212 ARG213 LYS214 GLY215 TYR216 ILE217 LYS218 HIS219 LYS220 PRO221 ASP222 GLN223 MET224 THR225 ILE226 ASN227 GLN228 TYR229 GLU230 PRO231 GLY232 GLN233 GLY234 ILE235 PRO236 ALA237 HIS238 ILE239 ASP240 THR241 HIS242 SER243 ALA244 PHE245 GLU246 ASP247 GLU248 ILE249 VAL250 SER251 LEU252 SER253 LEU254 GLY255 SER256 GLU257 ILE258 VAL259 MET260 ASP261 PHE262 LYS263 HIS264 PRO265 ASP266 GLY267 ILE268 ALA269 VAL270 PRO271 VAL272 MET273 LEU274 PRO275 ARG276 ARG277 SER278 LEU279 LEU280 VAL281 MET282 THR283 GLY284 GLU285 SER286 ARG287 TYR288 LEU289 TRP290 THR291 HIS292 GLY293 ILE294 THR295 CYS296 ARG297 LYS298 PHE299 ASP300 THR301 VAL302 GLN303 ALA304 SER305 GLU306 LYS309 SER310 GLY311 ILE312 ILE313 THR314 SER315 ASP316 VAL317 GLY318 ASP319 LEU320 THR321 LEU322 SER323 LYS324 ARG325 GLY326 LEU327 ARG328 THR329 SER330 PHE331 THR332 PHE333 ARG334 LYS335 VAL336 ARG337 GLN338 THR339 PRO340 CYS341 ASN342 CYS343 SER344 TYR345 PRO346 LEU347 VAL348 CYS349 ASP350 SER351 GLN352 ARG353 LYS354 GLU355 ASN356
Unit 4 THR28 LEU29 LEU30 ARG31 HIS32 GLU33 GLY34 ILE35 GLU36 THR37 VAL38 SER39 TYR40 ALA41 THR42 GLN43 SER44 LEU45 VAL46 VAL47 ALA48 ASN49 GLY50 GLY51 LEU52 GLY53 ASN54 GLY55 VAL56 SER57 ARG58 ASN59 GLN60 LEU61 LEU62 PRO63 VAL64 LEU65 GLU66 LYS67 CYS68 GLY69 LEU70 VAL71 ASP72 ALA73 LEU74 LEU75 MET76 PRO77 PRO78 ASN79 LYS80 PRO81 TYR82 SER83 PHE84 ALA85 ARG86 TYR87 ARG88 THR89 THR90 GLU91 GLU92 SER93 LYS94 ARG95 ALA96 TYR97 VAL98 THR99 LEU100 ASN101 GLY102 LYS103 GLU104 VAL105 VAL106 ASP107 ASP108 LEU109 GLY110 GLN111 LYS112 ILE113 THR114 LEU115 TYR116 LEU117 ASN118 PHE119 VAL120 GLU121 LYS122 VAL123 GLN124 TRP125 LYS126 GLU127 LEU128 ARG129 PRO130 GLN131 ALA132 LEU133 PRO134 PRO135 GLY136 LEU137 MET138 VAL139 VAL140 GLU141 GLU142 ILE143 ILE144 SER145 SER146 GLU147 GLU148 GLU149 LYS150 MET151 LEU152 LEU153 GLU154 SER155 VAL156 ASP157 TRP158 THR159 HIS173 ARG174 ARG175 VAL176 LYS177 HIS178 PHE179 GLY180 TYR181 LEU200 PRO201 ASP202 ILE203 CYS204 GLU205 SER206 PHE207 LEU208 GLU209 LYS210 TRP211 LEU212 ARG213 LYS214 GLY215 TYR216 ILE217 LYS218 HIS219 LYS220 PRO221 ASP222 GLN223 MET224 THR225 ILE226 ASN227 GLN228 TYR229 GLU230 PRO231 GLY232 GLN233 GLY234 ILE235 PRO236 ALA237 HIS238 ILE239 ASP240 THR241 HIS242 SER243 ALA244 PHE245 GLU246 ASP247 GLU248 ILE249 VAL250 SER251 LEU252 SER253 LEU254 GLY255 SER256 GLU257 ILE258 VAL259 MET260 ASP261 PHE262 LYS263 HIS264 PRO265 ASP266 GLY267 ILE268 ALA269 VAL270 PRO271 VAL272 MET273 LEU274 PRO275 ARG276 ARG277 SER278 LEU279 LEU280 VAL281 MET282 THR283 GLY284 GLU285 SER286 ARG287 TYR288 LEU289 TRP290 THR291 HIS292 GLY293 ILE294 THR295 CYS296 ARG297 LYS298 PHE299 ASP300 THR301 VAL302 GLN303 ALA304 SER305 GLU306 SER307 LEU308 LYS309 SER310 GLY311 ILE312 ILE313 THR314 SER315 ASP316 VAL317 GLY318 ASP319 LEU320 THR321 LEU322 SER323 LYS324 ARG325 GLY326 LEU327 ARG328 THR329 SER330 PHE331 THR332 PHE333 ARG334 LYS335 VAL336 ARG337 GLN338 THR339 PRO340 CYS341 ASN342 CYS343 SER344 TYR345 PRO346 LEU347 VAL348 CYS349 ASP350 SER351 GLN352 ARG353 LYS354 GLU355 ASN356 LEU357 TYR358 PHE359 GLN360

Ligands
Unit 5 ZN401 MN402 AKG403
Unit 6 ZN401 MN402 AKG403
Unit 7 ZN401 MN402 AKG403
Unit 8 ZN401 MN402 AKG403

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany