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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE LSM657 COMPLEX: AN ASSEMBLY INTERMEDIATE OF 7 AND LSM2 8 RINGS
Keywords SM, RNA METABOLISM, RNA, NUCLEAR, RNA BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3SWN     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  C 68 527 0
2  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  A 76 583 0
3  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6  B 71 552 0
4  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  F 78 597 0
5  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  D 73 557 0
6  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6  E 72 560 0
7  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  O 67 522 0
8  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  P 76 583 0
9  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6  Q 73 568 0
10  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  R 76 585 0
11  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  S 72 552 0
12  Protein   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6  T 72 560 0
13  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  C 1 0 1
14  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  A 1 0 1
15  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6  B 2 0 2
16  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  F 2 0 2
17  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  D 2 0 2
18  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  O 1 0 1
19  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  P 2 0 2
20  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6  Q 2 0 2
21  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7  R 2 0 2
22  Ligand   U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5  S 1 0 1
23 Water     24 0 24
total       914 6746 40
Proteins
Unit 1 LEU26 ASP27 LEU28 SER29 ARG30 TYR31 GLN32 ASP33 GLN34 ARG35 ILE36 GLN37 ALA38 THR39 PHE40 THR41 GLY42 GLY43 ARG44 GLN45 ILE46 THR47 GLY48 ILE49 LEU50 LYS51 GLY52 PHE53 ASP54 GLN55 LEU56 MET57 ASN58 LEU59 VAL60 LEU61 ASP62 ASP63 VAL64 GLU65 GLU66 GLN67 LEU68 ARG69 LEU76 THR77 GLY78 ALA79 ILE80 ARG81 LYS82 LEU83 GLY84 LEU85 VAL86 VAL87 VAL88 ARG89 GLY90 THR91 THR92 LEU93 VAL94 LEU95 ILE96 ALA97 PRO98 MET99
Unit 2 THR4 ILE5 LEU6 PRO7 LEU8 GLU9 LEU10 ILE11 ASP12 LYS13 CYS14 ILE15 GLY16 SER17 ASN18 LEU19 TRP20 VAL21 ILE22 MET23 LYS24 SER25 GLU26 ARG27 GLU28 PHE29 ALA30 GLY31 THR32 LEU33 VAL34 GLY35 PHE36 ASP37 ASP38 TYR39 VAL40 ASN41 ILE42 VAL43 LEU44 LYS45 ASP46 VAL47 THR48 GLU49 TYR50 ASP51 THR52 VAL53 THR54 GLY55 VAL56 THR57 GLU58 LYS59 HIS60 SER61 GLU62 MET63 LEU64 LEU65 ASN66 GLY67 ASN68 GLY69 MET70 CYS71 MET72 LEU73 ILE74 PRO75 GLY76 GLY77 LYS78 PRO79
Unit 3 SER3 SER4 PRO5 ASN6 GLU7 PHE8 LEU9 ASN10 LYS11 VAL12 ILE13 GLY14 LYS15 LYS16 VAL17 LEU18 ILE19 ARG20 LEU21 SER22 SER23 GLY24 VAL25 ASP26 TYR27 LYS28 GLY29 ILE30 LEU31 SER32 CYS33 LEU34 ASP35 GLY36 TYR37 MET38 ASN39 LEU40 ALA41 LEU42 GLU43 ARG44 THR45 GLU46 GLU47 TYR48 VAL49 ASN50 GLY51 LYS52 LYS53 THR54 ASN55 VAL56 TYR57 GLY58 ASP59 ALA60 PHE61 ILE62 ARG63 GLY64 ASN65 ASN66 VAL67 LEU68 TYR69 VAL70 SER71 ALA72 LEU73
Unit 4 SER24 ILE25 LEU26 ASP27 LEU28 SER29 ARG30 TYR31 GLN32 ASP33 GLN34 ARG35 ILE36 GLN37 ALA38 THR39 PHE40 THR41 GLY42 GLY43 ARG44 GLN45 ILE46 THR47 GLY48 ILE49 LEU50 LYS51 GLY52 PHE53 ASP54 GLN55 LEU56 MET57 ASN58 LEU59 VAL60 LEU61 ASP62 ASP63 VAL64 GLU65 GLU66 GLN67 LEU68 ARG69 ASN70 PRO71 GLU72 ASP73 GLY74 LYS75 LEU76 THR77 GLY78 ALA79 ILE80 ARG81 LYS82 LEU83 GLY84 LEU85 VAL86 VAL87 VAL88 ARG89 GLY90 THR91 THR92 LEU93 VAL94 LEU95 ILE96 ALA97 PRO98 MET99 ASP100 GLY101
Unit 5 ILE5 LEU6 PRO7 LEU8 GLU9 LEU10 ILE11 ASP12 LYS13 CYS14 ILE15 GLY16 SER17 ASN18 LEU19 TRP20 VAL21 ILE22 MET23 LYS24 SER25 GLU26 ARG27 GLU28 PHE29 ALA30 GLY31 THR32 LEU33 VAL34 GLY35 PHE36 ASP37 ASP38 TYR39 VAL40 ASN41 ILE42 VAL43 LEU44 LYS45 ASP46 VAL47 THR48 GLU49 TYR50 ASP51 THR52 VAL53 THR54 GLY55 VAL56 THR57 GLU58 LYS59 HIS60 SER61 GLU62 MET63 LEU64 LEU65 ASN66 GLY67 ASN68 GLY69 MET70 CYS71 MET72 LEU73 ILE74 PRO75 GLY76 GLY77
Unit 6 SER3 SER4 PRO5 ASN6 GLU7 PHE8 LEU9 ASN10 LYS11 VAL12 ILE13 GLY14 LYS15 LYS16 VAL17 LEU18 ILE19 ARG20 LEU21 SER22 SER23 GLY24 VAL25 ASP26 TYR27 LYS28 GLY29 ILE30 LEU31 SER32 CYS33 LEU34 ASP35 GLY36 TYR37 MET38 ASN39 LEU40 ALA41 LEU42 GLU43 ARG44 THR45 GLU46 GLU47 TYR48 VAL49 ASN50 GLY51 LYS52 LYS53 THR54 ASN55 VAL56 TYR57 GLY58 ASP59 ALA60 PHE61 ILE62 ARG63 GLY64 ASN65 ASN66 VAL67 LEU68 TYR69 VAL70 SER71 ALA72 LEU73 ASP74
Unit 7 ASP27 LEU28 SER29 ARG30 TYR31 GLN32 ASP33 GLN34 ARG35 ILE36 GLN37 ALA38 THR39 PHE40 THR41 GLY42 GLY43 ARG44 GLN45 ILE46 THR47 GLY48 ILE49 LEU50 LYS51 GLY52 PHE53 ASP54 GLN55 LEU56 MET57 ASN58 LEU59 VAL60 LEU61 ASP62 ASP63 VAL64 GLU65 GLU66 GLN67 LEU68 ARG69 LEU76 THR77 GLY78 ALA79 ILE80 ARG81 LYS82 LEU83 GLY84 LEU85 VAL86 VAL87 VAL88 ARG89 GLY90 THR91 THR92 LEU93 VAL94 LEU95 ILE96 ALA97 PRO98 MET99
Unit 8 THR4 ILE5 LEU6 PRO7 LEU8 GLU9 LEU10 ILE11 ASP12 LYS13 CYS14 ILE15 GLY16 SER17 ASN18 LEU19 TRP20 VAL21 ILE22 MET23 LYS24 SER25 GLU26 ARG27 GLU28 PHE29 ALA30 GLY31 THR32 LEU33 VAL34 GLY35 PHE36 ASP37 ASP38 TYR39 VAL40 ASN41 ILE42 VAL43 LEU44 LYS45 ASP46 VAL47 THR48 GLU49 TYR50 ASP51 THR52 VAL53 THR54 GLY55 VAL56 THR57 GLU58 LYS59 HIS60 SER61 GLU62 MET63 LEU64 LEU65 ASN66 GLY67 ASN68 GLY69 MET70 CYS71 MET72 LEU73 ILE74 PRO75 GLY76 GLY77 LYS78 PRO79
Unit 9 MET1 ASP2 SER3 SER4 PRO5 ASN6 GLU7 PHE8 LEU9 ASN10 LYS11 VAL12 ILE13 GLY14 LYS15 LYS16 VAL17 LEU18 ILE19 ARG20 LEU21 SER22 SER23 GLY24 VAL25 ASP26 TYR27 LYS28 GLY29 ILE30 LEU31 SER32 CYS33 LEU34 ASP35 GLY36 TYR37 MET38 ASN39 LEU40 ALA41 LEU42 GLU43 ARG44 THR45 GLU46 GLU47 TYR48 VAL49 ASN50 GLY51 LYS52 LYS53 THR54 ASN55 VAL56 TYR57 GLY58 ASP59 ALA60 PHE61 ILE62 ARG63 GLY64 ASN65 ASN66 VAL67 LEU68 TYR69 VAL70 SER71 ALA72 LEU73
Unit 10 SER24 ILE25 LEU26 ASP27 LEU28 SER29 ARG30 TYR31 GLN32 ASP33 GLN34 ARG35 ILE36 GLN37 ALA38 THR39 PHE40 THR41 GLY42 GLY43 ARG44 GLN45 ILE46 THR47 GLY48 ILE49 LEU50 LYS51 GLY52 PHE53 ASP54 GLN55 LEU56 MET57 ASN58 LEU59 VAL60 LEU61 ASP62 ASP63 VAL64 GLU65 GLU66 GLN67 LEU68 ARG69 ASN70 PRO71 GLU72 ASP73 GLY74 LYS75 LEU76 THR77 GLY78 ALA79 ILE80 ARG81 LYS82 LEU83 GLY84 LEU85 VAL86 VAL87 VAL88 ARG89 GLY90 THR91 THR92 LEU93 VAL94 LEU95 ILE96 ALA97 PRO98 MET99
Unit 11 LEU6 PRO7 LEU8 GLU9 LEU10 ILE11 ASP12 LYS13 CYS14 ILE15 GLY16 SER17 ASN18 LEU19 TRP20 VAL21 ILE22 MET23 LYS24 SER25 GLU26 ARG27 GLU28 PHE29 ALA30 GLY31 THR32 LEU33 VAL34 GLY35 PHE36 ASP37 ASP38 TYR39 VAL40 ASN41 ILE42 VAL43 LEU44 LYS45 ASP46 VAL47 THR48 GLU49 TYR50 ASP51 THR52 VAL53 THR54 GLY55 VAL56 THR57 GLU58 LYS59 HIS60 SER61 GLU62 MET63 LEU64 LEU65 ASN66 GLY67 ASN68 GLY69 MET70 CYS71 MET72 LEU73 ILE74 PRO75 GLY76 GLY77
Unit 12 SER3 SER4 PRO5 ASN6 GLU7 PHE8 LEU9 ASN10 LYS11 VAL12 ILE13 GLY14 LYS15 LYS16 VAL17 LEU18 ILE19 ARG20 LEU21 SER22 SER23 GLY24 VAL25 ASP26 TYR27 LYS28 GLY29 ILE30 LEU31 SER32 CYS33 LEU34 ASP35 GLY36 TYR37 MET38 ASN39 LEU40 ALA41 LEU42 GLU43 ARG44 THR45 GLU46 GLU47 TYR48 VAL49 ASN50 GLY51 LYS52 LYS53 THR54 ASN55 VAL56 TYR57 GLY58 ASP59 ALA60 PHE61 ILE62 ARG63 GLY64 ASN65 ASN66 VAL67 LEU68 TYR69 VAL70 SER71 ALA72 LEU73 ASP74
Ligands
Unit 13 ZN114
Unit 14 ZN81
Unit 15 ZN76 ZN77
Unit 16 ZN114 ZN115
Unit 17 ZN81 ZN82
Unit 18 ZN114
Unit 19 ZN81 ZN82
Unit 20 ZN76 ZN77
Unit 21 ZN114 ZN115
Unit 22 ZN81
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany