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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RNA:DNA DODECAMER CORRESPONDING TO HIV- POLYPURINE TRACT, AT 1.6 A RESOLUTION.
Keywords POLYPURINE TRACT (PPT) OF HIV-1; RNA-DNA HYBRID; REVERSE TRANSCRIPTION, RNA-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3SSF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 12 262 0
2  Other macromolecule   5'-D(*CP*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*A)-3'  B 12 235 0
3  Ligand   5'-R(*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*GP*G)-3'  A 2 0 2
4  Ligand   5'-D(*CP*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*A)-3'  B 1 0 1
5 Water     76 0 76
total       103 497 79

Nucleic acids
Unit 1 U1 A2 A3 A4 A5 G6 A7 A8 A9 A10 G11 G12

Other macromolecules
Unit 2 DC13 DC14 DT15 DT16 DT17 DT18 DC19 DT20 DT21 DT22 DT23 DA24

Ligands
Unit 3 MG13 MG14
Unit 4 MG1

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany