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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF APRATAXIN ORTHOLOG HNT3 IN COMPLEX WITH
Keywords HIT DOMAIN, ZINC FINGER, DNA DEADENYLASE, DNA BINDING, HYDRO COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3SPD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APRATAXIN-LIKE PROTEIN  A 200 1629 0
2  Protein   APRATAXIN-LIKE PROTEIN  B 200 1629 0
3  Protein   APRATAXIN-LIKE PROTEIN  C 200 1629 0
4  Protein   APRATAXIN-LIKE PROTEIN  D 200 1629 0
5  Other macromolecule   DNA (5'-D(*TP*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP 3')  E 14 285 0
6  Other macromolecule   DNA (5'- D(*GP*TP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*GP*AP*G)-3')  F 14 284 0
7  Other macromolecule   DNA (5'-D(*TP*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP 3')  G 14 285 0
8  Other macromolecule   DNA (5'- D(*GP*TP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*GP*AP*G)-3')  H 14 284 0
9  Ligand   APRATAXIN-LIKE PROTEIN  A 5 0 21
10  Ligand   APRATAXIN-LIKE PROTEIN  B 5 0 21
11  Ligand   APRATAXIN-LIKE PROTEIN  C 5 0 21
12  Ligand   APRATAXIN-LIKE PROTEIN  D 5 0 21
13 Water     1105 0 1105
total       1981 7654 1189
Proteins
Unit 1 SER33 PHE34 ARG35 ASP36 ASN37 LEU38 LYS39 VAL40 TYR41 ILE42 GLU43 SER44 PRO45 GLU46 SER47 TYR48 LYS49 ASN50 VAL51 ILE52 TYR53 TYR54 ASP55 ASP56 ASP57 VAL58 VAL59 LEU60 VAL61 ARG62 ASP63 MET64 PHE65 PRO66 LYS67 SER68 LYS69 MET70 HIS71 LEU72 LEU73 LEU74 MET75 THR76 ARG77 ASP78 PRO79 HIS80 LEU81 THR82 HIS83 VAL84 HIS85 PRO86 LEU87 GLU88 ILE89 MET90 MET91 LYS92 HIS93 ARG94 SER95 LEU96 VAL97 GLU98 LYS99 LEU100 VAL101 SER102 TYR103 VAL104 GLN105 GLY106 ASP107 LEU108 SER109 GLY110 LEU111 ILE112 PHE113 ASP114 GLU115 ALA116 ARG117 ASN118 CYS119 LEU120 SER121 GLN122 GLN123 LEU124 THR125 ASN126 GLU127 ALA128 LEU129 ALA130 ASN131 TYR132 ILE133 LYS134 VAL135 GLY136 PHE137 HIS138 ALA139 GLY140 PRO141 SER142 MET143 ASN144 ASN145 LEU146 HIS147 LEU148 HIS149 ILE150 MET151 THR152 LEU153 ASP154 HIS155 VAL156 SER157 PRO158 SER159 LEU160 LYS161 ASN162 SER163 ALA164 HIS165 TYR166 ILE167 SER168 PHE169 THR170 SER171 PRO172 PHE173 PHE174 VAL175 LYS176 ILE177 ASP178 THR179 PRO180 THR181 SER182 ASN183 LEU184 PRO185 THR186 ARG187 GLY188 THR189 LEU190 THR191 SER192 LEU193 PHE194 GLN195 GLU196 ASP197 LEU198 LYS199 CYS200 TRP201 ARG202 CYS203 GLY204 GLU205 THR206 PHE207 GLY208 ARG209 HIS210 PHE211 THR212 LYS213 LEU214 LYS215 ALA216 HIS217 LEU218 GLN219 GLU220 GLU221 TYR222 ASP223 ASP224 TRP225 LEU226 ASP227 LYS228 SER229 VAL230 SER231 MET232
Unit 2 SER33 PHE34 ARG35 ASP36 ASN37 LEU38 LYS39 VAL40 TYR41 ILE42 GLU43 SER44 PRO45 GLU46 SER47 TYR48 LYS49 ASN50 VAL51 ILE52 TYR53 TYR54 ASP55 ASP56 ASP57 VAL58 VAL59 LEU60 VAL61 ARG62 ASP63 MET64 PHE65 PRO66 LYS67 SER68 LYS69 MET70 HIS71 LEU72 LEU73 LEU74 MET75 THR76 ARG77 ASP78 PRO79 HIS80 LEU81 THR82 HIS83 VAL84 HIS85 PRO86 LEU87 GLU88 ILE89 MET90 MET91 LYS92 HIS93 ARG94 SER95 LEU96 VAL97 GLU98 LYS99 LEU100 VAL101 SER102 TYR103 VAL104 GLN105 GLY106 ASP107 LEU108 SER109 GLY110 LEU111 ILE112 PHE113 ASP114 GLU115 ALA116 ARG117 ASN118 CYS119 LEU120 SER121 GLN122 GLN123 LEU124 THR125 ASN126 GLU127 ALA128 LEU129 ALA130 ASN131 TYR132 ILE133 LYS134 VAL135 GLY136 PHE137 HIS138 ALA139 GLY140 PRO141 SER142 MET143 ASN144 ASN145 LEU146 HIS147 LEU148 HIS149 ILE150 MET151 THR152 LEU153 ASP154 HIS155 VAL156 SER157 PRO158 SER159 LEU160 LYS161 ASN162 SER163 ALA164 HIS165 TYR166 ILE167 SER168 PHE169 THR170 SER171 PRO172 PHE173 PHE174 VAL175 LYS176 ILE177 ASP178 THR179 PRO180 THR181 SER182 ASN183 LEU184 PRO185 THR186 ARG187 GLY188 THR189 LEU190 THR191 SER192 LEU193 PHE194 GLN195 GLU196 ASP197 LEU198 LYS199 CYS200 TRP201 ARG202 CYS203 GLY204 GLU205 THR206 PHE207 GLY208 ARG209 HIS210 PHE211 THR212 LYS213 LEU214 LYS215 ALA216 HIS217 LEU218 GLN219 GLU220 GLU221 TYR222 ASP223 ASP224 TRP225 LEU226 ASP227 LYS228 SER229 VAL230 SER231 MET232
Unit 3 SER33 PHE34 ARG35 ASP36 ASN37 LEU38 LYS39 VAL40 TYR41 ILE42 GLU43 SER44 PRO45 GLU46 SER47 TYR48 LYS49 ASN50 VAL51 ILE52 TYR53 TYR54 ASP55 ASP56 ASP57 VAL58 VAL59 LEU60 VAL61 ARG62 ASP63 MET64 PHE65 PRO66 LYS67 SER68 LYS69 MET70 HIS71 LEU72 LEU73 LEU74 MET75 THR76 ARG77 ASP78 PRO79 HIS80 LEU81 THR82 HIS83 VAL84 HIS85 PRO86 LEU87 GLU88 ILE89 MET90 MET91 LYS92 HIS93 ARG94 SER95 LEU96 VAL97 GLU98 LYS99 LEU100 VAL101 SER102 TYR103 VAL104 GLN105 GLY106 ASP107 LEU108 SER109 GLY110 LEU111 ILE112 PHE113 ASP114 GLU115 ALA116 ARG117 ASN118 CYS119 LEU120 SER121 GLN122 GLN123 LEU124 THR125 ASN126 GLU127 ALA128 LEU129 ALA130 ASN131 TYR132 ILE133 LYS134 VAL135 GLY136 PHE137 HIS138 ALA139 GLY140 PRO141 SER142 MET143 ASN144 ASN145 LEU146 HIS147 LEU148 HIS149 ILE150 MET151 THR152 LEU153 ASP154 HIS155 VAL156 SER157 PRO158 SER159 LEU160 LYS161 ASN162 SER163 ALA164 HIS165 TYR166 ILE167 SER168 PHE169 THR170 SER171 PRO172 PHE173 PHE174 VAL175 LYS176 ILE177 ASP178 THR179 PRO180 THR181 SER182 ASN183 LEU184 PRO185 THR186 ARG187 GLY188 THR189 LEU190 THR191 SER192 LEU193 PHE194 GLN195 GLU196 ASP197 LEU198 LYS199 CYS200 TRP201 ARG202 CYS203 GLY204 GLU205 THR206 PHE207 GLY208 ARG209 HIS210 PHE211 THR212 LYS213 LEU214 LYS215 ALA216 HIS217 LEU218 GLN219 GLU220 GLU221 TYR222 ASP223 ASP224 TRP225 LEU226 ASP227 LYS228 SER229 VAL230 SER231 MET232
Unit 4 SER33 PHE34 ARG35 ASP36 ASN37 LEU38 LYS39 VAL40 TYR41 ILE42 GLU43 SER44 PRO45 GLU46 SER47 TYR48 LYS49 ASN50 VAL51 ILE52 TYR53 TYR54 ASP55 ASP56 ASP57 VAL58 VAL59 LEU60 VAL61 ARG62 ASP63 MET64 PHE65 PRO66 LYS67 SER68 LYS69 MET70 HIS71 LEU72 LEU73 LEU74 MET75 THR76 ARG77 ASP78 PRO79 HIS80 LEU81 THR82 HIS83 VAL84 HIS85 PRO86 LEU87 GLU88 ILE89 MET90 MET91 LYS92 HIS93 ARG94 SER95 LEU96 VAL97 GLU98 LYS99 LEU100 VAL101 SER102 TYR103 VAL104 GLN105 GLY106 ASP107 LEU108 SER109 GLY110 LEU111 ILE112 PHE113 ASP114 GLU115 ALA116 ARG117 ASN118 CYS119 LEU120 SER121 GLN122 GLN123 LEU124 THR125 ASN126 GLU127 ALA128 LEU129 ALA130 ASN131 TYR132 ILE133 LYS134 VAL135 GLY136 PHE137 HIS138 ALA139 GLY140 PRO141 SER142 MET143 ASN144 ASN145 LEU146 HIS147 LEU148 HIS149 ILE150 MET151 THR152 LEU153 ASP154 HIS155 VAL156 SER157 PRO158 SER159 LEU160 LYS161 ASN162 SER163 ALA164 HIS165 TYR166 ILE167 SER168 PHE169 THR170 SER171 PRO172 PHE173 PHE174 VAL175 LYS176 ILE177 ASP178 THR179 PRO180 THR181 SER182 ASN183 LEU184 PRO185 THR186 ARG187 GLY188 THR189 LEU190 THR191 SER192 LEU193 PHE194 GLN195 GLU196 ASP197 LEU198 LYS199 CYS200 TRP201 ARG202 CYS203 GLY204 GLU205 THR206 PHE207 GLY208 ARG209 HIS210 PHE211 THR212 LYS213 LEU214 LYS215 ALA216 HIS217 LEU218 GLN219 GLU220 GLU221 TYR222 ASP223 ASP224 TRP225 LEU226 ASP227 LYS228 SER229 VAL230 SER231 MET232
Other macromolecules
Unit 5 DT1 DA2 DT3 DT4 DC5 DC6 DG7 DA8 DT9 DA10 DG11 DT12 DG13 DA14
Unit 6 DG1 DT2 DC3 DA4 DC5 DT6 DA7 DT8 DC9 DG10 DG11 DA12 DA13 DT14
Unit 7 DT1 DA2 DT3 DT4 DC5 DC6 DG7 DA8 DT9 DA10 DG11 DT12 DG13 DA14
Unit 8 DG1 DT2 DC3 DA4 DC5 DT6 DA7 DT8 DC9 DG10 DG11 DA12 DA13 DT14
Ligands
Unit 9 ZN601 SO4701 SO4702 SO4703 SO4704
Unit 10 ZN601 SO4701 SO4702 SO4703 SO4704
Unit 11 ZN601 SO4701 SO4702 SO4703 SO4704
Unit 12 ZN601 SO4701 SO4702 SO4703 SO4704
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany