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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND GUANOSINE
Keywords THREE-WAY JUNCTION, RIBOSWITCH, 2'-DEOXY GUANOSINE, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3SKZ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 68 1401 55
2  RNA    B 68 1401 51
3  Ligand   RNA (68-MER)  A 8 0 51
4  Ligand   RNA (68-MER)  B 6 0 37
5 Water     7 0 7
total       157 2802 201

Nucleic acids
Unit 1 GTP22 G23 C24 C25 U26 U27 A28 U29 A30 C31 A32 G33 G34 G35 U36 A37 G38 C39 A40 U41 A42 A43 U44 G45 G46 G47 C48 U49 A50 C51 U52 G53 A54 C55 C56 C57 C58 G59 C60 C61 U62 U63 C64 A65 A66 A67 C68 C69 U70 A71 U72 U73 U74 G75 G76 A77 G78 A79 C80 U81 A82 U83 A84 A85 G86 G87 U88 CCC89
Unit 2 GTP22 G23 C24 C25 U26 U27 A28 U29 A30 C31 A32 G33 G34 G35 U36 A37 G38 C39 A40 U41 A42 A43 U44 G45 G46 G47 C48 U49 A50 C51 U52 G53 A54 C55 C56 C57 C58 G59 C60 C61 U62 U63 C64 A65 A66 A67 C68 C69 U70 A71 U72 U73 U74 G75 G76 A77 G78 A79 C80 U81 A82 U83 A84 A85 G86 G87 U88 CCC89

Ligands
Unit 3 GMP120 SO4211 SO4212 SO4213 SO4216 MG228 SO4229 SIN301
Unit 4 GMP120 MG172 MG175 SO4214 SO4217 SO4219

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany