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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND DEOXYGUANOSINE, COBALT HEXAMMINE SOAK
Keywords THREE-WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3SKR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 66 1358 47
2  RNA    B 66 1358 47
3  Ligand   RNA (66-MER)  A 9 0 57
4  Ligand   RNA (66-MER)  B 6 0 48
5 Water     18 0 18
total       165 2716 217

Nucleic acids
Unit 1 GTP23 G24 C25 U26 U27 A28 U29 A30 C31 A32 G33 G34 G35 U36 A37 G38 C39 A40 U41 A42 A43 U44 G45 G46 G47 C48 U49 A50 C51 U52 G53 A54 C55 C56 C57 C58 G59 C60 C61 U62 U63 C64 A65 A66 A67 C68 C69 U70 A71 U72 U73 U74 G75 G76 A77 G78 A79 C80 U81 A82 U83 A84 A85 G86 U87 CCC88
Unit 2 GTP23 G24 C25 U26 U27 A28 U29 A30 C31 A32 G33 G34 G35 U36 A37 G38 C39 A40 U41 A42 A43 U44 G45 G46 G47 C48 U49 A50 C51 U52 G53 A54 C55 C56 C57 C58 G59 C60 C61 U62 U63 C64 A65 A66 A67 C68 C69 U70 A71 U72 U73 U74 G75 G76 A77 G78 A79 C80 U81 A82 U83 A84 A85 G86 U87 CCC88

Ligands
Unit 3 GNG120 MG201 MG202 MG204 NCO401 NCO402 NCO403 NCO405 NCO406
Unit 4 GNG120 MG203 NCO404 NCO407 NCO408 NCO409

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany