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Title | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND DEOXYGUANOSINE, IRIDIUM HEXAMMINE SOAK | |
Keywords | THREE WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3SKL | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 66 | 1358 | 55 | |
2 | RNA | B | 66 | 1358 | 55 | |
3 | Ligand | RNA (66-MER) | A | 7 | 0 | 55 |
4 | Ligand | RNA (66-MER) | B | 11 | 0 | 59 |
5 | Water | 5 | 0 | 5 | ||
total | 155 | 2716 | 229 |
Unit 1 | GTP22 G23 C24 U25 U26 A27 U28 A29 C30 A31 G32 G33 G34 U35 A36 G37 C38 A39 U40 A41 A42 U43 G44 G45 G46 C47 U48 A49 C50 U51 G52 A53 C54 C55 C56 C57 G58 C59 C60 U61 U62 C63 A64 A65 A66 C67 C68 U69 A70 U71 U72 U73 G74 G75 A76 G77 A78 C79 U80 A81 U82 A83 A84 G85 U86 CCC87 |
Unit 2 | GTP22 G23 C24 U25 U26 A27 U28 A29 C30 A31 G32 G33 G34 U35 A36 G37 C38 A39 U40 A41 A42 U43 G44 G45 G46 C47 U48 A49 C50 U51 G52 A53 C54 C55 C56 C57 G58 C59 C60 U61 U62 C63 A64 A65 A66 C67 C68 U69 A70 U71 U72 U73 G74 G75 A76 G77 A78 C79 U80 A81 U82 A83 A84 G85 U86 CCC87 |
Unit 3 | GNG120 MG201 IRI402 IRI403 IRI405 IRI409 IRI411 |
Unit 4 | GNG120 MG202 MG203 MG204 MG205 MG206 IRI404 IRI406 IRI407 IRI408 IRI410 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |