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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND DEOXYGUANOSINE, IRIDIUM HEXAMMINE SOAK
Keywords THREE WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3SKL     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 66 1358 55
2  RNA    B 66 1358 55
3  Ligand   RNA (66-MER)  A 7 0 55
4  Ligand   RNA (66-MER)  B 11 0 59
5 Water     5 0 5
total       155 2716 229

Nucleic acids
Unit 1 GTP22 G23 C24 U25 U26 A27 U28 A29 C30 A31 G32 G33 G34 U35 A36 G37 C38 A39 U40 A41 A42 U43 G44 G45 G46 C47 U48 A49 C50 U51 G52 A53 C54 C55 C56 C57 G58 C59 C60 U61 U62 C63 A64 A65 A66 C67 C68 U69 A70 U71 U72 U73 G74 G75 A76 G77 A78 C79 U80 A81 U82 A83 A84 G85 U86 CCC87
Unit 2 GTP22 G23 C24 U25 U26 A27 U28 A29 C30 A31 G32 G33 G34 U35 A36 G37 C38 A39 U40 A41 A42 U43 G44 G45 G46 C47 U48 A49 C50 U51 G52 A53 C54 C55 C56 C57 G58 C59 C60 U61 U62 C63 A64 A65 A66 C67 C68 U69 A70 U71 U72 U73 G74 G75 A76 G77 A78 C79 U80 A81 U82 A83 A84 G85 U86 CCC87

Ligands
Unit 3 GNG120 MG201 IRI402 IRI403 IRI405 IRI409 IRI411
Unit 4 GNG120 MG202 MG203 MG204 MG205 MG206 IRI404 IRI406 IRI407 IRI408 IRI410

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany