3SKJ - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF AN AGONISTIC A EPHA2 MONOCLONAL ANTIBODY
• Keywords: FAB, RECEPTOR, IG FOLD, EPHRIN RECEPTOR, ANTIBODY, ANTIGEN, CELLULAR, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3SKJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ANTIBODY, LIGHT CHAIN	L	214	1651	0
2	Protein	ANTIBODY, HEAVY CHAIN	H	228	1698	0
3	Protein	ANTIBODY, LIGHT CHAIN	M	214	1651	0
4	Protein	ANTIBODY, HEAVY CHAIN	I	228	1696	0
5	Protein	EPHRIN TYPE-A RECEPTOR 2	E	176	1415	0
6	Protein	EPHRIN TYPE-A RECEPTOR 2	F	84	659	0
7	Water			43	0	43
total				1187	8770	43

Proteins

Unit 1	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 ILE 29 SER 30 THR 31 TRP 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 LYS 50 ALA 51 SER 52 ASN 53 LEU 54 HIS 55 THR 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLU 70 PHE 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 GLY 77 LEU 78 GLN 79 PRO 80 ASP 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 ASN 92 SER 93 TYR 94 SER 95 ARG 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212 GLU 213 CYS 214
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 LEU 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 HIS 31 TYR 32 MET 33 MET 34 ALA 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 ARG 50 ILE 51 GLY 52 PRO 52A SER 53 GLY 54 GLY 55 PRO 56 THR 57 HIS 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 SER 74 LYS 75 ASN 76 THR 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 GLY 94 TYR 95 ASP 96 SER 97 GLY 98 TYR 99 ASP 100 TYR 100A VAL 100B ALA 100C VAL 100D ALA 100E GLY 100F PRO 100G ALA 100H GLU 100I TYR 100J PHE 100K GLN 101 HIS 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 LYS 129 GLY 130 GLY 131 THR 132 ALA 133 ALA 134 LEU 135 GLY 136 CYS 137 LEU 138 VAL 139 LYS 140 ASP 141 TYR 142 PHE 143 PRO 144 GLU 145 PRO 146 VAL 147 THR 148 VAL 149 SER 150 TRP 151 ASN 152 SER 153 GLY 154 ALA 155 LEU 156 THR 157 SER 158 GLY 159 VAL 160 HIS 161 THR 162 PHE 163 PRO 164 ALA 165 VAL 166 LEU 167 GLN 168 SER 169 SER 170 GLY 171 LEU 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 VAL 178 VAL 179 THR 180 VAL 181 PRO 182 SER 183 SER 184 SER 185 LEU 186 GLY 187 THR 188 GLN 189 THR 190 TYR 191 ILE 192 CYS 193 ASN 194 VAL 195 ASN 196 HIS 197 LYS 198 PRO 199 SER 200 ASN 201 THR 202 LYS 203 VAL 204 ASP 205 LYS 206 ARG 207 VAL 208 GLU 209 PRO 210 LYS 211 SER 212 CYS 213
Unit 3	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 ILE 29 SER 30 THR 31 TRP 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 LYS 50 ALA 51 SER 52 ASN 53 LEU 54 HIS 55 THR 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLU 70 PHE 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 GLY 77 LEU 78 GLN 79 PRO 80 ASP 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 ASN 92 SER 93 TYR 94 SER 95 ARG 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212 GLU 213 CYS 214
Unit 4	GLU 1 VAL 2 GLN 3 LEU 4 LEU 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 HIS 31 TYR 32 MET 33 MET 34 ALA 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 ARG 50 ILE 51 GLY 52 PRO 52A SER 53 GLY 54 GLY 55 PRO 56 THR 57 HIS 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 SER 74 LYS 75 ASN 76 THR 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 GLY 94 TYR 95 ASP 96 SER 97 GLY 98 TYR 99 ASP 100 TYR 100A VAL 100B ALA 100C VAL 100D ALA 100E GLY 100F PRO 100G ALA 100H GLU 100I TYR 100J PHE 100K GLN 101 HIS 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 SER 129 GLY 130 GLY 131 THR 132 ALA 133 ALA 134 LEU 135 GLY 136 CYS 137 LEU 138 VAL 139 LYS 140 ASP 141 TYR 142 PHE 143 PRO 144 GLU 145 PRO 146 VAL 147 THR 148 VAL 149 SER 150 TRP 151 ASN 152 SER 153 GLY 154 ALA 155 LEU 156 THR 157 SER 158 GLY 159 VAL 160 HIS 161 THR 162 PHE 163 PRO 164 ALA 165 VAL 166 LEU 167 GLN 168 SER 169 SER 170 GLY 171 LEU 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 VAL 178 VAL 179 THR 180 VAL 181 PRO 182 SER 183 SER 184 SER 185 LEU 186 GLY 187 THR 188 GLN 189 THR 190 TYR 191 ILE 192 CYS 193 ASN 194 VAL 195 ASN 196 HIS 197 LYS 198 PRO 199 SER 200 ASN 201 THR 202 LYS 203 VAL 204 ASP 205 LYS 206 ARG 207 VAL 208 GLU 209 PRO 210 LYS 211 SER 212 CYS 213
Unit 5	GLN 1 GLY 2 LYS 3 GLU 4 VAL 5 VAL 6 LEU 7 LEU 8 ASP 9 PHE 10 ALA 11 ALA 12 ALA 13 GLY 14 GLY 15 GLU 16 LEU 17 GLY 18 TRP 19 LEU 20 THR 21 HIS 22 PRO 23 TYR 24 GLY 25 LYS 26 GLY 27 TRP 28 ASP 29 LEU 30 MET 31 GLN 32 ASN 33 ILE 34 MET 35 ASN 36 ASP 37 MET 38 PRO 39 ILE 40 TYR 41 MET 42 TYR 43 SER 44 VAL 45 CYS 46 ASN 47 VAL 48 MET 49 SER 50 GLY 51 ASP 52 GLN 53 ASP 54 ASN 55 TRP 56 LEU 57 ARG 58 THR 59 ASN 60 TRP 61 VAL 62 TYR 63 ARG 64 GLY 65 GLU 66 ALA 67 GLU 68 ARG 69 ILE 70 PHE 71 ILE 72 GLU 73 LEU 74 LYS 75 PHE 76 THR 77 VAL 78 ARG 79 ASP 80 CYS 81 ASN 82 SER 83 PHE 84 PRO 85 GLY 86 GLY 87 ALA 88 SER 89 SER 90 CYS 91 LYS 92 GLU 93 THR 94 PHE 95 ASN 96 LEU 97 TYR 98 TYR 99 ALA 100 GLU 101 SER 102 ASP 103 LEU 104 ASP 105 TYR 106 GLY 107 THR 108 ASN 109 PHE 110 GLN 111 LYS 112 ARG 113 LEU 114 PHE 115 THR 116 LYS 117 ILE 118 ASP 119 THR 120 ILE 121 ALA 122 PRO 123 ASP 124 GLU 125 ILE 126 THR 127 VAL 128 SER 129 SER 130 ASP 131 PHE 132 GLU 133 ALA 134 ARG 135 HIS 136 VAL 137 LYS 138 LEU 139 ASN 140 VAL 141 GLU 142 GLU 143 ARG 144 SER 145 VAL 146 GLY 147 PRO 148 LEU 149 THR 150 ARG 151 LYS 152 GLY 153 PHE 154 TYR 155 LEU 156 ALA 157 PHE 158 GLN 159 ASP 160 ILE 161 GLY 162 ALA 163 CYS 164 VAL 165 ALA 166 LEU 167 LEU 168 SER 169 VAL 170 ARG 171 VAL 172 TYR 173 TYR 174 LYS 175 LYS 176
Unit 6	TRP 28 ASP 29 LEU 30 MET 31 GLN 32 ASN 33 ILE 34 MET 35 ASN 36 ASP 37 MET 38 PRO 39 ILE 40 TYR 41 MET 42 TYR 43 SER 44 VAL 45 CYS 46 ASN 47 VAL 48 MET 49 SER 50 GLY 51 ASP 52 GLN 53 ASP 54 ASN 55 TRP 56 LEU 57 ARG 58 LEU 74 LYS 75 PHE 76 THR 77 VAL 78 ARG 79 ASP 80 CYS 81 ASN 82 SER 83 PHE 84 PRO 85 GLY 86 GLY 87 ALA 88 SER 89 SER 90 CYS 91 LYS 92 GLU 93 THR 94 PHE 95 ASN 96 ILE 121 ALA 122 PRO 123 ASP 124 GLU 125 ILE 126 THR 127 VAL 128 SER 129 SER 130 ASP 131 PHE 132 GLU 133 ALA 134 ARG 135 HIS 136 VAL 137 LYS 138 LEU 139 ASN 140 VAL 141 GLU 142 ALA 163 CYS 164 VAL 165 ALA 166 LEU 167 LEU 168 SER 169 VAL 170