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Title | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND DEOXYGUANOSINE | |
Keywords | THREE-WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3SKI | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 68 | 1401 | 55 | |
2 | RNA | B | 68 | 1424 | 23 | |
3 | Ligand | RNA (68-MER) | A | 10 | 0 | 55 |
4 | Ligand | RNA (68-MER) | B | 5 | 0 | 35 |
5 | Water | 111 | 0 | 111 | ||
total | 262 | 2825 | 279 |
Unit 1 | GTP22 G23 C24 C25 U26 U27 A28 U29 A30 C31 A32 G33 G34 G35 U36 A37 G38 C39 A40 U41 A42 A43 U44 G45 G46 G47 C48 U49 A50 C51 U52 G53 A54 C55 C56 C57 C58 G59 C60 C61 U62 U63 C64 A65 A66 A67 C68 C69 U70 A71 U72 U73 U74 G75 G76 A77 G78 A79 C80 U81 A82 U83 A84 A85 G86 G87 U88 CCC89 |
Unit 2 | G22 G23 C24 C25 U26 U27 A28 U29 A30 C31 A32 G33 G34 G35 U36 A37 G38 C39 A40 U41 A42 A43 U44 G45 G46 G47 C48 U49 A50 C51 U52 G53 A54 C55 C56 C57 C58 G59 C60 C61 U62 U63 C64 A65 A66 A67 C68 C69 U70 A71 U72 U73 U74 G75 G76 A77 G78 A79 C80 U81 A82 U83 A84 A85 G86 G87 U88 CCC89 |
Unit 3 | GNG120 MG201 MG204 SO4211 SO4212 SO4213 SO4216 MG228 SO4229 SIN301 |
Unit 4 | GNG120 MG206 SO4214 SO4217 SO4219 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |