Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A HPRP31-15.5K-U4ATAC 5' STEM LOOP COMPLEX, MON FORM
Keywords MAJOR AND MINOR SPLICEOSOME, RNA-PROTEIN COMPLEX, U4 SNRNP A SNRNP, RNA-BINDING PROTEIN, PRE-MRNA SPLICING, U4 SNRNA, NU SPLICING-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3SIU     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NHP2-LIKE PROTEIN 1  A 125 967 0
2  Protein   U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31  B 235 1844 0
3  RNA    C 28 601 0
4  Protein   NHP2-LIKE PROTEIN 1  D 125 968 0
5  Protein   U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31  E 236 1848 0
6  RNA    F 28 601 0
7  Ligand   U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31  B 1 0 5
8  Ligand   NHP2-LIKE PROTEIN 1  D 1 0 5
9 Water     57 0 57
total       836 6829 67
Proteins
Unit 1 ALA4 ASP5 VAL6 ASN7 PRO8 LYS9 ALA10 TYR11 PRO12 LEU13 ALA14 ASP15 ALA16 HIS17 LEU18 THR19 LYS20 LYS21 LEU22 LEU23 ASP24 LEU25 VAL26 GLN27 GLN28 SER29 CYS30 ASN31 TYR32 LYS33 GLN34 LEU35 ARG36 LYS37 GLY38 ALA39 ASN40 GLU41 ALA42 THR43 LYS44 THR45 LEU46 ASN47 ARG48 GLY49 ILE50 SER51 GLU52 PHE53 ILE54 VAL55 MET56 ALA57 ALA58 ASP59 ALA60 GLU61 PRO62 LEU63 GLU64 ILE65 ILE66 LEU67 HIS68 LEU69 PRO70 LEU71 LEU72 CYS73 GLU74 ASP75 LYS76 ASN77 VAL78 PRO79 TYR80 VAL81 PHE82 VAL83 ARG84 SER85 LYS86 GLN87 ALA88 LEU89 GLY90 ARG91 ALA92 CYS93 GLY94 VAL95 SER96 ARG97 PRO98 VAL99 ILE100 ALA101 CYS102 SER103 VAL104 THR105 ILE106 LYS107 GLU108 GLY109 SER110 GLN111 LEU112 LYS113 GLN114 GLN115 ILE116 GLN117 SER118 ILE119 GLN120 GLN121 SER122 ILE123 GLU124 ARG125 LEU126 LEU127 VAL128
Unit 2 ALA86 ALA87 PRO88 GLU89 TYR90 ARG91 VAL92 ILE93 VAL94 ASP95 ALA96 ASN97 ASN98 LEU99 THR100 VAL101 GLU102 ILE103 GLU104 ASN105 GLU106 LEU107 ASN108 ILE109 ILE110 HIS111 LYS112 PHE113 ILE114 ARG115 ASP116 LYS117 TYR118 SER119 LYS120 ARG121 PHE122 PRO123 GLU124 LEU125 GLU126 SER127 LEU128 VAL129 PRO130 ASN131 ALA132 LEU133 ASP134 TYR135 ILE136 ARG137 THR138 VAL139 LYS140 GLU141 LEU142 GLY143 ASN144 SER145 LEU146 ASP147 LYS148 CYS149 LYS150 ASN151 ASN152 GLU153 ASN154 LEU155 GLN156 GLN157 ILE158 LEU159 THR160 ASN161 ALA162 THR163 ILE164 MET165 VAL166 VAL167 SER168 VAL169 THR170 ALA171 SER172 THR173 THR174 GLN175 GLY176 GLN177 GLN178 LEU179 SER180 GLU181 GLU182 GLU183 LEU184 GLU185 ARG186 LEU187 GLU188 GLU189 ALA190 CYS191 ASP192 MET193 ALA194 LEU195 GLU196 LEU197 ASN198 ALA199 SER200 LYS201 HIS202 ARG203 ILE204 TYR205 GLU206 TYR207 VAL208 GLU209 SER210 ARG211 MET212 SER213 PHE214 ILE215 ALA216 PRO217 ASN218 LEU219 SER220 ILE221 ILE222 ILE223 GLY224 ALA225 SER226 THR227 ALA228 ALA229 LYS230 ILE231 MET232 GLY233 VAL234 ALA235 GLY236 GLY237 LEU238 THR239 ASN240 LEU241 SER242 LYS243 MET244 PRO245 ALA246 CYS247 ASN248 ILE249 MET250 LEU251 LEU252 GLY253 ALA254 GLN255 LEU268 PRO269 HIS270 THR271 GLY272 TYR273 ILE274 TYR275 HIS276 SER277 ASP278 ILE279 VAL280 GLN281 SER282 LEU283 PRO284 PRO285 ASP286 LEU287 ARG288 ARG289 LYS290 ALA291 ALA292 ARG293 LEU294 VAL295 ALA296 ALA297 LYS298 CYS299 THR300 LEU301 ALA302 ALA303 ARG304 VAL305 ASP306 SER307 PHE308 HIS309 GLU310 SER311 THR312 GLU313 GLY314 LYS315 VAL316 GLY317 TYR318 GLU319 LEU320 LYS321 ASP322 GLU323 ILE324 GLU325 ARG326 LYS327 PHE328 ASP329 LYS330 TRP331 GLN332
Unit 4 ALA4 ASP5 VAL6 ASN7 PRO8 LYS9 ALA10 TYR11 PRO12 LEU13 ALA14 ASP15 ALA16 HIS17 LEU18 THR19 LYS20 LYS21 LEU22 LEU23 ASP24 LEU25 VAL26 GLN27 GLN28 SER29 CYS30 ASN31 TYR32 LYS33 GLN34 LEU35 ARG36 LYS37 GLY38 ALA39 ASN40 GLU41 ALA42 THR43 LYS44 THR45 LEU46 ASN47 ARG48 GLY49 ILE50 SER51 GLU52 PHE53 ILE54 VAL55 MET56 ALA57 ALA58 ASP59 ALA60 GLU61 PRO62 LEU63 GLU64 ILE65 ILE66 LEU67 HIS68 LEU69 PRO70 LEU71 LEU72 CYS73 GLU74 ASP75 LYS76 ASN77 VAL78 PRO79 TYR80 VAL81 PHE82 VAL83 ARG84 SER85 LYS86 GLN87 ALA88 LEU89 GLY90 ARG91 ALA92 CYS93 GLY94 VAL95 SER96 ARG97 PRO98 VAL99 ILE100 ALA101 CYS102 SER103 VAL104 THR105 ILE106 LYS107 GLU108 GLY109 SER110 GLN111 LEU112 LYS113 GLN114 GLN115 ILE116 GLN117 SER118 ILE119 GLN120 GLN121 SER122 ILE123 GLU124 ARG125 LEU126 LEU127 VAL128
Unit 5 ALA86 ALA87 PRO88 GLU89 TYR90 ARG91 VAL92 ILE93 VAL94 ASP95 ALA96 ASN97 ASN98 LEU99 THR100 VAL101 GLU102 ILE103 GLU104 ASN105 GLU106 LEU107 ASN108 ILE109 ILE110 HIS111 LYS112 PHE113 ILE114 ARG115 ASP116 LYS117 TYR118 SER119 LYS120 ARG121 PHE122 PRO123 GLU124 LEU125 GLU126 SER127 LEU128 VAL129 PRO130 ASN131 ALA132 LEU133 ASP134 TYR135 ILE136 ARG137 THR138 VAL139 LYS140 GLU141 LEU142 GLY143 ASN144 SER145 LEU146 ASP147 LYS148 CYS149 LYS150 ASN151 ASN152 GLU153 ASN154 LEU155 GLN156 GLN157 ILE158 LEU159 THR160 ASN161 ALA162 THR163 ILE164 MET165 VAL166 VAL167 SER168 VAL169 THR170 ALA171 SER172 THR173 THR174 GLN175 GLY176 GLN177 GLN178 LEU179 SER180 GLU181 GLU182 GLU183 LEU184 GLU185 ARG186 LEU187 GLU188 GLU189 ALA190 CYS191 ASP192 MET193 ALA194 LEU195 GLU196 LEU197 ASN198 ALA199 SER200 LYS201 HIS202 ARG203 ILE204 TYR205 GLU206 TYR207 VAL208 GLU209 SER210 ARG211 MET212 SER213 PHE214 ILE215 ALA216 PRO217 ASN218 LEU219 SER220 ILE221 ILE222 ILE223 GLY224 ALA225 SER226 THR227 ALA228 ALA229 LYS230 ILE231 MET232 GLY233 VAL234 ALA235 GLY236 GLY237 LEU238 THR239 ASN240 LEU241 SER242 LYS243 MET244 PRO245 ALA246 CYS247 ASN248 ILE249 MET250 LEU251 LEU252 GLY253 ALA254 SER266 VAL267 LEU268 PRO269 HIS270 THR271 GLY272 TYR273 ILE274 TYR275 HIS276 SER277 ASP278 ILE279 VAL280 GLN281 SER282 LEU283 PRO284 PRO285 ASP286 LEU287 ARG288 ARG289 LYS290 ALA291 ALA292 ARG293 LEU294 VAL295 ALA296 ALA297 LYS298 CYS299 THR300 LEU301 ALA302 ALA303 ARG304 VAL305 ASP306 SER307 PHE308 HIS309 GLU310 SER311 THR312 GLU313 GLY314 LYS315 VAL316 GLY317 TYR318 GLU319 LEU320 LYS321 ASP322 GLU323 ILE324 GLU325 ARG326 LYS327 PHE328 ASP329 LYS330 TRP331 GLN332
Nucleic acids
Unit 3 C28 U29 G30 U31 C32 C33 A34 A35 U36 G37 A38 G39 C40 G41 C42 A43 U44 A45 G46 U47 G48 A49 G50 G51 G52 C53 A54 G55
Unit 6 C28 U29 G30 U31 C32 C33 A34 A35 U36 G37 A38 G39 C40 G41 C42 A43 U44 A45 G46 U47 G48 A49 G50 G51 G52 C53 A54 G55
Ligands
Unit 7 SO41
Unit 8 SO4129
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany