3SEF - Sequence, Chains, Asymmetric and Biological Units

• Title: 2.4 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF SHIKIMATE 5-DEH (AROE) FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961 IN WITH SHIKIMATE AND NADPH
• Keywords: STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFEC DISEASES, CSGID, SHIKIMATE, ALPHA/BETA DOMAIN, ROSSMANN FOL OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3SEF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SHIKIMATE 5-DEHYDROGENASE	A	268	2053	0
2	Protein	SHIKIMATE 5-DEHYDROGENASE	B	269	2063	0
3	Protein	SHIKIMATE 5-DEHYDROGENASE	C	244	1874	0
4	Protein	SHIKIMATE 5-DEHYDROGENASE	D	272	2086	0
5	Ligand	SHIKIMATE 5-DEHYDROGENASE	A	1	0	48
6	Ligand	SHIKIMATE 5-DEHYDROGENASE	B	2	0	60
7	Ligand	SHIKIMATE 5-DEHYDROGENASE	C	1	0	12
8	Water			134	0	134
total				1191	8076	254

Proteins

Unit 1	ILE 5 ASP 6 GLN 7 TYR 8 ALA 9 VAL 10 PHE 11 GLY 12 ASN 13 PRO 14 SER 18 LYS 19 SER 20 PRO 21 PHE 22 ILE 23 HIS 24 THR 25 LEU 26 PHE 27 ALA 28 ARG 29 GLN 30 THR 31 GLN 32 GLN 33 SER 34 MET 35 ILE 36 TYR 37 THR 38 ALA 39 GLN 40 CYS 41 VAL 42 PRO 43 ASP 45 GLY 46 PHE 47 THR 48 GLU 49 ALA 50 ALA 51 LYS 52 HIS 53 PHE 54 PHE 55 ALA 56 GLN 57 GLY 58 GLY 59 ARG 60 GLY 61 CYS 62 ASN 63 VAL 64 THR 65 VAL 66 PRO 67 PHE 68 LYS 69 GLU 70 GLU 71 ALA 72 TYR 73 ARG 74 PHE 75 ALA 76 ASP 77 ARG 78 LEU 79 THR 80 GLU 81 ARG 82 ALA 83 ARG 84 LEU 85 ALA 86 GLY 87 ALA 88 VAL 89 ASN 90 THR 91 LEU 92 LYS 93 LYS 94 LEU 95 ASP 96 ASP 97 GLY 98 GLU 99 ILE 100 LEU 101 GLY 102 ASP 103 ASN 104 THR 105 ASP 106 GLY 107 GLU 108 GLY 109 LEU 110 VAL 111 GLN 112 ASP 113 LEU 114 LEU 115 ALA 116 GLN 117 GLN 118 VAL 119 LEU 120 LEU 121 LYS 122 GLY 123 ALA 124 THR 125 ILE 126 LEU 127 LEU 128 ILE 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 ALA 135 ARG 136 GLY 137 VAL 138 LEU 139 LYS 140 PRO 141 LEU 142 LEU 143 ASP 144 GLN 145 GLN 146 PRO 147 ALA 148 SER 149 ILE 150 THR 151 VAL 152 THR 153 ASN 154 ARG 155 THR 156 PHE 157 ALA 158 LYS 159 ALA 160 GLU 161 GLN 162 LEU 163 ALA 164 GLU 165 LEU 166 VAL 167 ALA 168 ALA 169 TYR 170 GLY 171 GLU 172 VAL 173 LYS 174 ALA 175 GLN 176 ALA 177 PHE 178 GLU 179 GLN 180 LEU 181 LYS 182 GLN 183 SER 184 TYR 185 ASP 186 VAL 187 ILE 188 ILE 189 ASN 190 SER 191 THR 192 SER 193 ALA 194 SER 195 LEU 196 ASP 197 GLY 198 GLU 199 LEU 200 PRO 201 ALA 202 ILE 203 ASP 204 PRO 205 VAL 206 ILE 207 PHE 208 SER 209 SER 210 ARG 211 SER 212 VAL 213 CYS 214 TYR 215 ASP 216 MET 217 MET 218 TYR 219 GLY 220 LYS 221 GLY 222 TYR 223 THR 224 VAL 225 PHE 226 ASN 227 GLN 228 TRP 229 ALA 230 ARG 231 GLN 232 HIS 233 GLY 234 CYS 235 ALA 236 GLN 237 ALA 238 ILE 239 ASP 240 GLY 241 LEU 242 GLY 243 MET 244 LEU 245 VAL 246 GLY 247 GLN 248 ALA 249 ALA 250 GLU 251 SER 252 PHE 253 MET 254 LEU 255 TRP 256 ARG 257 GLY 258 LEU 259 ARG 260 PRO 261 GLY 262 THR 263 LYS 264 GLN 265 ILE 266 LEU 267 ARG 268 GLU 269 LEU 270 ARG 271 LYS 272 ASN 273 LEU 274 GLU 275 GLY 276
Unit 2	ILE 5 ASP 6 GLN 7 TYR 8 ALA 9 VAL 10 PHE 11 GLY 12 ASN 13 HIS 17 SER 18 LYS 19 SER 20 PRO 21 PHE 22 ILE 23 HIS 24 THR 25 LEU 26 PHE 27 ALA 28 ARG 29 GLN 30 THR 31 GLN 32 GLN 33 SER 34 MET 35 ILE 36 TYR 37 THR 38 ALA 39 GLN 40 CYS 41 VAL 42 PRO 43 VAL 44 ASP 45 GLY 46 PHE 47 THR 48 GLU 49 ALA 50 ALA 51 LYS 52 HIS 53 PHE 54 PHE 55 ALA 56 GLN 57 GLY 58 GLY 59 ARG 60 GLY 61 CYS 62 ASN 63 VAL 64 THR 65 VAL 66 PRO 67 PHE 68 LYS 69 GLU 70 GLU 71 ALA 72 TYR 73 ARG 74 PHE 75 ALA 76 ASP 77 ARG 78 LEU 79 THR 80 GLU 81 ARG 82 ALA 83 ARG 84 LEU 85 ALA 86 GLY 87 ALA 88 VAL 89 ASN 90 THR 91 LEU 92 LYS 93 LYS 94 LEU 95 ASP 96 ASP 97 GLY 98 GLU 99 ILE 100 LEU 101 GLY 102 ASP 103 ASN 104 THR 105 ASP 106 GLY 107 GLU 108 GLY 109 LEU 110 VAL 111 GLN 112 ASP 113 LEU 114 LEU 115 ALA 116 GLN 117 GLN 118 VAL 119 LEU 120 LEU 121 LYS 122 GLY 123 ALA 124 THR 125 ILE 126 LEU 127 LEU 128 ILE 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 ALA 135 ARG 136 GLY 137 VAL 138 LEU 139 LYS 140 PRO 141 LEU 142 LEU 143 ASP 144 GLN 145 GLN 146 PRO 147 ALA 148 SER 149 ILE 150 THR 151 VAL 152 THR 153 ASN 154 ARG 155 THR 156 PHE 157 ALA 158 LYS 159 ALA 160 GLU 161 GLN 162 LEU 163 ALA 164 GLU 165 LEU 166 VAL 167 ALA 168 ALA 169 TYR 170 GLY 171 GLU 172 VAL 173 LYS 174 ALA 175 GLN 176 ALA 177 PHE 178 GLU 179 GLN 180 LEU 181 LYS 182 GLN 183 SER 184 TYR 185 ASP 186 VAL 187 ILE 188 ILE 189 ASN 190 SER 191 THR 192 SER 193 ALA 194 SER 195 LEU 196 ASP 197 GLY 198 GLU 199 LEU 200 PRO 201 ALA 202 ILE 203 ASP 204 PRO 205 VAL 206 ILE 207 PHE 208 SER 209 SER 210 ARG 211 SER 212 VAL 213 CYS 214 TYR 215 ASP 216 MET 217 MET 218 TYR 219 GLY 220 LYS 221 GLY 222 TYR 223 THR 224 VAL 225 PHE 226 ASN 227 GLN 228 TRP 229 ALA 230 ARG 231 GLN 232 HIS 233 GLY 234 CYS 235 ALA 236 GLN 237 ALA 238 ILE 239 ASP 240 GLY 241 LEU 242 GLY 243 MET 244 LEU 245 VAL 246 GLY 247 GLN 248 ALA 249 ALA 250 GLU 251 SER 252 PHE 253 MET 254 LEU 255 TRP 256 ARG 257 GLY 258 LEU 259 ARG 260 PRO 261 GLY 262 THR 263 LYS 264 GLN 265 ILE 266 LEU 267 ARG 268 GLU 269 LEU 270 ARG 271 LYS 272 ASN 273 LEU 274 GLU 275 GLY 276
Unit 3	ILE 5 ASP 6 GLN 7 TYR 8 ALA 9 VAL 10 PHE 11 GLY 12 ASN 13 PRO 14 ILE 15 ASN 16 HIS 17 SER 18 LYS 19 SER 20 PRO 21 PHE 22 ILE 23 HIS 24 THR 25 LEU 26 PHE 27 ALA 28 ARG 29 GLN 30 THR 31 GLN 32 GLN 33 SER 34 MET 35 ILE 36 TYR 37 THR 38 ALA 39 GLN 40 CYS 41 VAL 42 PRO 43 VAL 44 ASP 45 GLY 46 PHE 47 THR 48 GLU 49 ALA 50 ALA 51 LYS 52 HIS 53 PHE 54 PHE 55 ALA 56 GLN 57 GLY 58 GLY 59 ARG 60 GLY 61 CYS 62 ASN 63 VAL 64 THR 65 VAL 66 PRO 67 PHE 68 LYS 69 GLU 70 GLU 71 ALA 72 TYR 73 ARG 74 PHE 75 ALA 76 ASP 77 ARG 78 LEU 79 THR 80 GLU 81 ARG 82 ALA 83 ARG 84 LEU 85 ALA 86 GLY 87 ALA 88 VAL 89 ASN 90 THR 91 LEU 92 LYS 93 LYS 94 ASP 96 ASP 97 GLY 98 GLU 99 ILE 100 LEU 101 GLY 102 ASP 103 ASN 104 THR 105 ASP 106 GLY 107 GLU 108 GLY 109 LEU 110 VAL 111 GLN 112 ASP 113 LEU 114 LEU 115 ALA 116 GLN 117 GLN 118 VAL 119 LEU 120 LEU 121 LYS 122 GLY 123 ALA 124 THR 125 ILE 126 LEU 127 LEU 128 ILE 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 ALA 135 ARG 136 GLY 137 VAL 138 LEU 139 LYS 140 PRO 141 LEU 142 LEU 143 ASP 144 GLN 145 GLN 146 PRO 147 ALA 148 SER 149 ILE 150 THR 151 VAL 152 THR 153 ASN 154 ARG 155 THR 156 PHE 157 ALA 158 LYS 159 ALA 160 GLU 161 GLN 162 LEU 163 ALA 164 GLU 165 LEU 166 VAL 167 ALA 168 ALA 169 TYR 170 GLY 171 GLU 172 VAL 173 LYS 174 ALA 175 GLN 176 ALA 177 PHE 178 GLU 179 GLN 180 LEU 181 LYS 182 GLN 183 SER 184 TYR 185 ASP 186 VAL 187 ILE 188 ILE 189 ASN 190 SER 191 THR 192 SER 193 ALA 202 ILE 203 ASP 204 PRO 205 VAL 206 ILE 207 PHE 208 SER 209 SER 210 ARG 211 SER 212 VAL 213 CYS 214 TYR 215 ASP 216 MET 217 MET 218 TYR 219 GLY 220 ILE 239 ASP 240 GLY 241 LEU 242 GLY 243 MET 244 LEU 245 VAL 246 GLY 247 GLN 248 ALA 249 ALA 250 GLU 251 SER 252 PHE 253 MET 254 LEU 255 TRP 256 ARG 257 GLY 258 LEU 259 ARG 260 PRO 261 GLY 262 THR 263 LYS 264 GLN 265 ILE 266 LEU 267 ARG 268 GLU 269 LEU 270 ARG 271 LYS 272 ASN 273 LEU 274 GLU 275
Unit 4	ILE 5 ASP 6 GLN 7 TYR 8 ALA 9 VAL 10 PHE 11 GLY 12 ASN 13 PRO 14 ILE 15 ASN 16 HIS 17 SER 18 LYS 19 SER 20 PRO 21 PHE 22 ILE 23 HIS 24 THR 25 LEU 26 PHE 27 ALA 28 ARG 29 GLN 30 THR 31 GLN 32 GLN 33 SER 34 MET 35 ILE 36 TYR 37 THR 38 ALA 39 GLN 40 CYS 41 VAL 42 PRO 43 VAL 44 ASP 45 GLY 46 PHE 47 THR 48 GLU 49 ALA 50 ALA 51 LYS 52 HIS 53 PHE 54 PHE 55 ALA 56 GLN 57 GLY 58 GLY 59 ARG 60 GLY 61 CYS 62 ASN 63 VAL 64 THR 65 VAL 66 PRO 67 PHE 68 LYS 69 GLU 70 GLU 71 ALA 72 TYR 73 ARG 74 PHE 75 ALA 76 ASP 77 ARG 78 LEU 79 THR 80 GLU 81 ARG 82 ALA 83 ARG 84 LEU 85 ALA 86 GLY 87 ALA 88 VAL 89 ASN 90 THR 91 LEU 92 LYS 93 LYS 94 LEU 95 ASP 96 ASP 97 GLY 98 GLU 99 ILE 100 LEU 101 GLY 102 ASP 103 ASN 104 THR 105 ASP 106 GLY 107 GLU 108 GLY 109 LEU 110 VAL 111 GLN 112 ASP 113 LEU 114 LEU 115 ALA 116 GLN 117 GLN 118 VAL 119 LEU 120 LEU 121 LYS 122 GLY 123 ALA 124 THR 125 ILE 126 LEU 127 LEU 128 ILE 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 ALA 135 ARG 136 GLY 137 VAL 138 LEU 139 LYS 140 PRO 141 LEU 142 LEU 143 ASP 144 GLN 145 GLN 146 PRO 147 ALA 148 SER 149 ILE 150 THR 151 VAL 152 THR 153 ASN 154 ARG 155 THR 156 PHE 157 ALA 158 LYS 159 ALA 160 GLU 161 GLN 162 LEU 163 ALA 164 GLU 165 LEU 166 VAL 167 ALA 168 ALA 169 TYR 170 GLY 171 GLU 172 VAL 173 LYS 174 ALA 175 GLN 176 ALA 177 PHE 178 GLU 179 GLN 180 LEU 181 LYS 182 GLN 183 SER 184 TYR 185 ASP 186 VAL 187 ILE 188 ILE 189 ASN 190 SER 191 THR 192 SER 193 ALA 194 SER 195 LEU 196 ASP 197 GLY 198 GLU 199 LEU 200 PRO 201 ALA 202 ILE 203 ASP 204 PRO 205 VAL 206 ILE 207 PHE 208 SER 209 SER 210 ARG 211 SER 212 VAL 213 CYS 214 TYR 215 ASP 216 MET 217 MET 218 TYR 219 GLY 220 LYS 221 GLY 222 TYR 223 THR 224 VAL 225 PHE 226 ASN 227 GLN 228 TRP 229 ALA 230 ARG 231 GLN 232 HIS 233 GLY 234 CYS 235 ALA 236 GLN 237 ALA 238 ILE 239 ASP 240 GLY 241 LEU 242 GLY 243 MET 244 LEU 245 VAL 246 GLY 247 GLN 248 ALA 249 ALA 250 GLU 251 SER 252 PHE 253 MET 254 LEU 255 TRP 256 ARG 257 GLY 258 LEU 259 ARG 260 PRO 261 GLY 262 THR 263 LYS 264 GLN 265 ILE 266 LEU 267 ARG 268 GLU 269 LEU 270 ARG 271 LYS 272 ASN 273 LEU 274 GLU 275 GLY 276

Ligands

Unit 5	NDP 279
Unit 6	NDP 279 SKM 280
Unit 7	SKM 279