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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HUMAN ENDOPLASMIC RETICULUM AMINOPE
Keywords THERMOLYSIN-LIKE CATALYTIC DOMAIN, AMINOPEPTIDASE, ZINC BIND GLYCOSYLATION, ENDOPLASMIC RETICULUM, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3SE6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2  A 869 7036 0
2  Protein   ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2  B 859 6978 0
3  Ligand    C 2 0 28
4  Ligand    D 2 0 28
5  Ligand    E 4 0 50
6  Protein   ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2  A 5 0 51
7  Protein   ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2  B 4 0 37
8 Water     126 0 126
total       1871 14014 320
Proteins
Unit 1 PRO54 VAL55 ALA56 THR57 ASN58 GLY59 GLU60 ARG61 PHE62 PRO63 TRP64 GLN65 GLU66 LEU67 ARG68 LEU69 PRO70 SER71 VAL72 VAL73 ILE74 PRO75 LEU76 HIS77 TYR78 ASP79 LEU80 PHE81 VAL82 HIS83 PRO84 ASN85 LEU86 THR87 SER88 LEU89 ASP90 PHE91 VAL92 ALA93 SER94 GLU95 LYS96 ILE97 GLU98 VAL99 LEU100 VAL101 SER102 ASN103 ALA104 THR105 GLN106 PHE107 ILE108 ILE109 LEU110 HIS111 SER112 LYS113 ASP114 LEU115 GLU116 ILE117 THR118 ASN119 ALA120 THR121 LEU122 GLN123 SER124 GLU125 GLU126 TYR130 MET131 LYS132 PRO133 GLY134 LYS135 GLU136 LEU137 LYS138 VAL139 LEU140 SER141 TYR142 PRO143 ALA144 HIS145 GLU146 GLN147 ILE148 ALA149 LEU150 LEU151 VAL152 PRO153 GLU154 LYS155 LEU156 THR157 PRO158 HIS159 LEU160 LYS161 TYR162 TYR163 VAL164 ALA165 MET166 ASP167 PHE168 GLN169 ALA170 LYS171 LEU172 GLY173 ASP174 GLY175 PHE176 GLU177 GLY178 PHE179 TYR180 LYS181 SER182 THR183 TYR184 ARG185 THR186 LEU187 GLY188 GLY189 GLU190 THR191 ARG192 ILE193 LEU194 ALA195 VAL196 THR197 ASP198 PHE199 GLU200 PRO201 THR202 GLN203 ALA204 ARG205 MET206 ALA207 PHE208 PRO209 CYS210 PHE211 ASP212 GLU213 PRO214 LEU215 PHE216 LYS217 ALA218 ASN219 PHE220 SER221 ILE222 LYS223 ILE224 ARG225 ARG226 GLU227 SER228 ARG229 HIS230 ILE231 ALA232 LEU233 SER234 ASN235 MET236 PRO237 LYS238 VAL239 LYS240 THR241 ILE242 GLU243 LEU244 GLU245 GLY246 GLY247 LEU248 LEU249 GLU250 ASP251 HIS252 PHE253 GLU254 THR255 THR256 VAL257 LYS258 MET259 SER260 THR261 TYR262 LEU263 VAL264 ALA265 TYR266 ILE267 VAL268 CYS269 ASP270 PHE271 HIS272 SER273 LEU274 SER275 GLY276 PHE277 THR278 SER279 SER280 GLY281 VAL282 LYS283 VAL284 SER285 ILE286 TYR287 ALA288 SER289 PRO290 ASP291 LYS292 ARG293 ASN294 GLN295 THR296 HIS297 TYR298 ALA299 LEU300 GLN301 ALA302 SER303 LEU304 LYS305 LEU306 LEU307 ASP308 PHE309 TYR310 GLU311 LYS312 TYR313 PHE314 ASP315 ILE316 TYR317 TYR318 PRO319 LEU320 SER321 LYS322 LEU323 ASP324 LEU325 ILE326 ALA327 ILE328 PRO329 ASP330 PHE331 ALA332 PRO333 GLY334 ALA335 MET336 GLU337 ASN338 TRP339 GLY340 LEU341 ILE342 THR343 TYR344 ARG345 GLU346 THR347 SER348 LEU349 LEU350 PHE351 ASP352 PRO353 LYS354 THR355 SER356 SER357 ALA358 SER359 ASP360 LYS361 LEU362 TRP363 VAL364 THR365 ARG366 VAL367 ILE368 ALA369 HIS370 GLU371 LEU372 ALA373 HIS374 GLN375 TRP376 PHE377 GLY378 ASN379 LEU380 VAL381 THR382 MET383 GLU384 TRP385 TRP386 ASN387 ASP388 ILE389 TRP390 LEU391 ASN392 GLU393 GLY394 PHE395 ALA396 LYS397 TYR398 MET399 GLU400 LEU401 ILE402 ALA403 VAL404 ASN405 ALA406 THR407 TYR408 PRO409 GLU410 LEU411 GLN412 PHE413 ASP414 ASP415 TYR416 PHE417 LEU418 ASN419 VAL420 CYS421 PHE422 GLU423 VAL424 ILE425 THR426 LYS427 ASP428 SER429 LEU430 ASN431 SER432 SER433 ARG434 PRO435 ILE436 SER437 LYS438 PRO439 ALA440 GLU441 THR442 PRO443 THR444 GLN445 ILE446 GLN447 GLU448 MET449 PHE450 ASP451 GLU452 VAL453 SER454 TYR455 ASN456 LYS457 GLY458 ALA459 CYS460 ILE461 LEU462 ASN463 MET464 LEU465 LYS466 ASP467 PHE468 LEU469 GLY470 GLU471 GLU472 LYS473 PHE474 GLN475 LYS476 GLY477 ILE478 ILE479 GLN480 TYR481 LEU482 LYS483 LYS484 PHE485 SER486 TYR487 ARG488 ASN489 ALA490 LYS491 ASN492 ASP493 ASP494 LEU495 TRP496 SER497 SER498 LEU499 SER500 ASN501 SER502 LEU528 GLY529 GLU530 ASN531 ALA532 GLU533 VAL534 LYS535 GLU536 MET537 MET538 THR539 THR540 TRP541 THR542 LEU543 GLN544 LYS545 GLY546 ILE547 PRO548 LEU549 LEU550 VAL551 VAL552 LYS553 GLN554 ASP555 GLY556 CYS557 SER558 LEU559 ARG560 LEU561 GLN562 GLN563 GLU564 ARG565 PHE566 LEU567 GLN568 GLY569 GLN581 GLU582 ARG583 TYR584 LEU585 TRP586 HIS587 ILE588 PRO589 LEU590 THR591 TYR592 SER593 THR594 SER595 SER596 SER597 ASN598 VAL599 ILE600 HIS601 ARG602 HIS603 ILE604 LEU605 LYS606 SER607 LYS608 THR609 ASP610 THR611 LEU612 ASP613 LEU614 PRO615 GLU616 LYS617 THR618 SER619 TRP620 VAL621 LYS622 PHE623 ASN624 VAL625 ASP626 SER627 ASN628 GLY629 TYR630 TYR631 ILE632 VAL633 HIS634 TYR635 GLU636 GLY637 HIS638 GLY639 TRP640 ASP641 GLN642 LEU643 ILE644 THR645 GLN646 LEU647 ASN648 GLN649 ASN650 HIS651 THR652 LEU653 LEU654 ARG655 PRO656 LYS657 ASP658 ARG659 VAL660 GLY661 LEU662 ILE663 HIS664 ASP665 VAL666 PHE667 GLN668 LEU669 VAL670 GLY671 ALA672 GLY673 ARG674 LEU675 THR676 LEU677 ASP678 LYS679 ALA680 LEU681 ASP682 MET683 THR684 TYR685 TYR686 LEU687 GLN688 HIS689 GLU690 THR691 SER692 SER693 PRO694 ALA695 LEU696 LEU697 GLU698 GLY699 LEU700 SER701 TYR702 LEU703 GLU704 SER705 PHE706 TYR707 HIS708 MET709 MET710 ASP711 ARG712 ARG713 ASN714 ILE715 SER716 ASP717 ILE718 SER719 GLU720 ASN721 LEU722 LYS723 ARG724 TYR725 LEU726 LEU727 GLN728 TYR729 PHE730 LYS731 PRO732 VAL733 ILE734 ASP735 ARG736 GLN737 SER738 TRP739 SER740 ASP741 LYS742 GLY743 SER744 VAL745 TRP746 ASP747 ARG748 MET749 LEU750 ARG751 SER752 ALA753 LEU754 LEU755 LYS756 LEU757 ALA758 CYS759 ASP760 LEU761 ASN762 HIS763 ALA764 PRO765 CYS766 ILE767 GLN768 LYS769 ALA770 ALA771 GLU772 LEU773 PHE774 SER775 GLN776 TRP777 MET778 GLU779 SER780 SER781 GLY782 LYS783 LEU784 ASN785 ILE786 PRO787 THR788 ASP789 VAL790 LEU791 LYS792 ILE793 VAL794 TYR795 SER796 VAL797 GLY798 ALA799 GLN800 THR801 THR802 ALA803 GLY804 TRP805 ASN806 TYR807 LEU808 LEU809 GLU810 GLN811 TYR812 GLU813 LEU814 SER815 MET816 SER817 SER818 ALA819 GLU820 GLN821 ASN822 LYS823 ILE824 LEU825 TYR826 ALA827 LEU828 SER829 THR830 SER831 LYS832 HIS833 GLN834 GLU835 LYS836 LEU837 LEU838 LYS839 LEU840 ILE841 GLU842 LEU843 GLY844 MET845 GLU846 GLY847 LYS848 VAL849 ILE850 LYS851 THR852 GLN853 ASN854 LEU855 ALA856 ALA857 LEU858 LEU859 HIS860 ALA861 ILE862 ALA863 ARG864 ARG865 PRO866 LYS867 GLY868 GLN869 GLN870 LEU871 ALA872 TRP873 ASP874 PHE875 VAL876 ARG877 GLU878 ASN879 TRP880 THR881 HIS882 LEU883 LEU884 LYS885 LYS886 PHE887 ASP888 LEU889 GLY890 SER891 TYR892 ASP893 ILE894 ARG895 MET896 ILE897 ILE898 SER899 GLY900 THR901 THR902 ALA903 HIS904 PHE905 SER906 SER907 LYS908 ASP909 LYS910 LEU911 GLN912 GLU913 VAL914 LYS915 LEU916 PHE917 PHE918 GLU919 SER920 LEU921 GLU922 ALA923 GLN924 GLY925 SER926 HIS927 LEU928 ASP929 ILE930 PHE931 GLN932 THR933 VAL934 LEU935 GLU936 THR937 ILE938 THR939 LYS940 ASN941 ILE942 LYS943 TRP944 LEU945 GLU946 LYS947 ASN948 LEU949 PRO950 THR951 LEU952 ARG953 THR954 TRP955 LEU956 MET957 VAL958 ASN959 THR960 ARG961
Unit 2 VAL55 ALA56 THR57 ASN58 GLY59 GLU60 ARG61 PHE62 PRO63 TRP64 GLN65 GLU66 LEU67 ARG68 LEU69 PRO70 SER71 VAL72 VAL73 ILE74 PRO75 LEU76 HIS77 TYR78 ASP79 LEU80 PHE81 VAL82 HIS83 PRO84 ASN85 LEU86 THR87 SER88 LEU89 ASP90 PHE91 VAL92 ALA93 SER94 GLU95 LYS96 ILE97 GLU98 VAL99 LEU100 VAL101 SER102 ASN103 ALA104 THR105 GLN106 PHE107 ILE108 ILE109 LEU110 HIS111 SER112 LYS113 ASP114 LEU115 GLU116 ILE117 THR118 ASN119 ALA120 THR121 LEU122 GLN123 SER124 GLU125 PRO133 GLY134 LYS135 GLU136 LEU137 LYS138 VAL139 LEU140 SER141 TYR142 PRO143 ALA144 HIS145 GLU146 GLN147 ILE148 ALA149 LEU150 LEU151 VAL152 PRO153 GLU154 LYS155 LEU156 THR157 PRO158 HIS159 LEU160 LYS161 TYR162 TYR163 VAL164 ALA165 MET166 ASP167 PHE168 GLN169 ALA170 LYS171 LEU172 GLY173 ASP174 GLY175 PHE176 GLU177 GLY178 PHE179 TYR180 LYS181 SER182 THR183 TYR184 ARG185 THR186 LEU187 GLY188 GLY189 GLU190 THR191 ARG192 ILE193 LEU194 ALA195 VAL196 THR197 ASP198 PHE199 GLU200 PRO201 THR202 GLN203 ALA204 ARG205 MET206 ALA207 PHE208 PRO209 CYS210 PHE211 ASP212 GLU213 PRO214 LEU215 PHE216 LYS217 ALA218 ASN219 PHE220 SER221 ILE222 LYS223 ILE224 ARG225 ARG226 GLU227 SER228 ARG229 HIS230 ILE231 ALA232 LEU233 SER234 ASN235 MET236 PRO237 LYS238 VAL239 LYS240 THR241 ILE242 GLU243 LEU244 GLU245 GLY246 GLY247 LEU248 LEU249 GLU250 ASP251 HIS252 PHE253 GLU254 THR255 THR256 VAL257 LYS258 MET259 SER260 THR261 TYR262 LEU263 VAL264 ALA265 TYR266 ILE267 VAL268 CYS269 ASP270 PHE271 HIS272 SER273 LEU274 SER275 GLY276 PHE277 THR278 SER279 SER280 GLY281 VAL282 LYS283 VAL284 SER285 ILE286 TYR287 ALA288 SER289 PRO290 ASP291 LYS292 ARG293 ASN294 GLN295 THR296 HIS297 TYR298 ALA299 LEU300 GLN301 ALA302 SER303 LEU304 LYS305 LEU306 LEU307 ASP308 PHE309 TYR310 GLU311 LYS312 TYR313 PHE314 ASP315 ILE316 TYR317 TYR318 PRO319 LEU320 SER321 LYS322 LEU323 ASP324 LEU325 ILE326 ALA327 ILE328 PRO329 ASP330 PHE331 ALA332 PRO333 GLY334 ALA335 MET336 GLU337 ASN338 TRP339 GLY340 LEU341 ILE342 THR343 TYR344 ARG345 GLU346 THR347 SER348 LEU349 LEU350 PHE351 ASP352 PRO353 LYS354 THR355 SER356 SER357 ALA358 SER359 ASP360 LYS361 LEU362 TRP363 VAL364 THR365 ARG366 VAL367 ILE368 ALA369 HIS370 GLU371 LEU372 ALA373 HIS374 GLN375 TRP376 PHE377 GLY378 ASN379 LEU380 VAL381 THR382 MET383 GLU384 TRP385 TRP386 ASN387 ASP388 ILE389 TRP390 LEU391 ASN392 GLU393 GLY394 PHE395 ALA396 LYS397 TYR398 MET399 GLU400 LEU401 ILE402 ALA403 VAL404 ASN405 ALA406 THR407 TYR408 PRO409 GLU410 LEU411 GLN412 PHE413 ASP414 ASP415 TYR416 PHE417 LEU418 ASN419 VAL420 CYS421 PHE422 GLU423 VAL424 ILE425 THR426 LYS427 ASP428 SER429 LEU430 ASN431 SER432 SER433 ARG434 PRO435 ILE436 SER437 LYS438 PRO439 ALA440 GLU441 THR442 PRO443 THR444 GLN445 ILE446 GLN447 GLU448 MET449 PHE450 ASP451 GLU452 VAL453 SER454 TYR455 ASN456 LYS457 GLY458 ALA459 CYS460 ILE461 LEU462 ASN463 MET464 LEU465 LYS466 ASP467 PHE468 LEU469 GLY470 GLU471 GLU472 LYS473 PHE474 GLN475 LYS476 GLY477 ILE478 ILE479 GLN480 TYR481 LEU482 LYS483 LYS484 PHE485 SER486 TYR487 ARG488 ASN489 ALA490 LYS491 ASN492 ASP493 ASP494 LEU495 TRP496 SER497 SER498 LEU499 SER500 ASN501 SER502 ALA532 GLU533 VAL534 LYS535 GLU536 MET537 MET538 THR539 THR540 TRP541 THR542 LEU543 GLN544 LYS545 GLY546 ILE547 PRO548 LEU549 LEU550 VAL551 VAL552 LYS553 GLN554 ASP555 GLY556 CYS557 SER558 LEU559 ARG560 LEU561 GLN562 GLN563 GLU564 ARG565 PHE566 LEU567 GLN568 GLY569 VAL570 ARG583 TYR584 LEU585 TRP586 HIS587 ILE588 PRO589 LEU590 THR591 TYR592 SER593 THR594 SER595 SER596 SER597 ASN598 VAL599 ILE600 HIS601 ARG602 HIS603 ILE604 LEU605 LYS606 SER607 LYS608 THR609 ASP610 THR611 LEU612 ASP613 LEU614 PRO615 GLU616 LYS617 THR618 SER619 TRP620 VAL621 LYS622 PHE623 ASN624 VAL625 ASP626 SER627 ASN628 GLY629 TYR630 TYR631 ILE632 VAL633 HIS634 TYR635 GLU636 GLY637 HIS638 GLY639 TRP640 ASP641 GLN642 LEU643 ILE644 THR645 GLN646 LEU647 ASN648 GLN649 ASN650 HIS651 THR652 LEU653 LEU654 ARG655 PRO656 LYS657 ASP658 ARG659 VAL660 GLY661 LEU662 ILE663 HIS664 ASP665 VAL666 PHE667 GLN668 LEU669 VAL670 GLY671 ALA672 GLY673 ARG674 LEU675 THR676 LEU677 ASP678 LYS679 ALA680 LEU681 ASP682 MET683 THR684 TYR685 TYR686 LEU687 GLN688 HIS689 GLU690 THR691 SER692 SER693 PRO694 ALA695 LEU696 LEU697 GLU698 GLY699 LEU700 SER701 TYR702 LEU703 GLU704 SER705 PHE706 TYR707 HIS708 MET709 MET710 ASP711 ARG712 ARG713 ASN714 ILE715 SER716 ASP717 ILE718 SER719 GLU720 ASN721 LEU722 LYS723 ARG724 TYR725 LEU726 LEU727 GLN728 TYR729 PHE730 LYS731 PRO732 VAL733 ILE734 ASP735 ARG736 GLN737 SER738 TRP739 SER740 ASP741 LYS742 GLY743 SER744 VAL745 TRP746 ASP747 ARG748 MET749 LEU750 ARG751 SER752 ALA753 LEU754 LEU755 LYS756 LEU757 ALA758 CYS759 ASP760 LEU761 ASN762 HIS763 ALA764 PRO765 CYS766 ILE767 GLN768 LYS769 ALA770 ALA771 GLU772 LEU773 PHE774 SER775 GLN776 TRP777 MET778 GLU779 SER780 SER781 GLY782 LYS783 LEU784 ASN785 ILE786 PRO787 THR788 ASP789 VAL790 LEU791 LYS792 ILE793 VAL794 TYR795 SER796 VAL797 GLY798 ALA799 GLN800 THR801 THR802 ALA803 GLY804 TRP805 ASN806 TYR807 LEU808 LEU809 GLU810 GLN811 TYR812 GLU813 LEU814 SER815 MET816 SER817 SER818 ALA819 GLU820 GLN821 ASN822 LYS823 ILE824 LEU825 TYR826 ALA827 LEU828 SER829 THR830 SER831 LYS832 HIS833 GLN834 GLU835 LYS836 LEU837 LEU838 LYS839 LEU840 ILE841 GLU842 LEU843 GLY844 MET845 GLU846 GLY847 LYS848 VAL849 ILE850 LYS851 THR852 GLN853 ASN854 LEU855 ALA856 ALA857 LEU858 LEU859 HIS860 ALA861 ILE862 ALA863 ARG864 ARG865 PRO866 LYS867 GLY868 GLN869 GLN870 LEU871 ALA872 TRP873 ASP874 PHE875 VAL876 ARG877 GLU878 ASN879 TRP880 THR881 HIS882 LEU883 LEU884 LYS885 LYS886 PHE887 ASP888 LEU889 GLY890 SER891 TYR892 ASP893 ILE894 ARG895 MET896 ILE897 ILE898 SER899 GLY900 THR901 THR902 ALA903 HIS904 PHE905 SER906 SER907 LYS908 ASP909 LYS910 LEU911 GLN912 GLU913 VAL914 LYS915 LEU916 PHE917 PHE918 GLU919 SER920 LEU921 GLU922 ALA923 GLN924 GLY925 SER926 HIS927 LEU928 ASP929 ILE930 PHE931 GLN932 THR933 VAL934 LEU935 GLU936 THR937 ILE938 THR939 LYS940 ASN941 ILE942 LYS943 TRP944 LEU945 GLU946 LYS947 ASN948 LEU949 PRO950 THR951 LEU952 ARG953 THR954 TRP955 LEU956 MET957 VAL958 ASN959 THR960 ARG961
Unit 6 LYS968 NAG1075 NAG1076 MES1083 ZN5000
Unit 7 LYS968 NAG1081 MES1084 ZN6000
Ligands
Unit 3 NAG1 NAG2
Unit 4 NAG1 NAG2
Unit 5 NAG1 NAG2 MAN3 MAN4
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany