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Sequence, Chains, Asymmetric and Biological Units

Title RNA CRYSTAL STRUCTURE WITH 2-SE-URIDINE MODIFICATION
Keywords RNA, 2-SE-URIDINE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3S49     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 8 146 20
2  RNA    B 8 146 20
3  RNA    C 8 146 20
4  RNA    D 8 146 20
5  RNA    E 8 146 20
6  RNA    F 8 146 20
7  RNA    G 8 146 20
8  Ligand   RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')  C 1 0 1
9  Ligand   RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')  E 1 0 1
10  Ligand   RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')  F 1 0 1
11 Water     71 0 71
total       130 1022 214

Nucleic acids
Unit 1 G1 U2 A3 U4 A5 RUS6 A7 C8
Unit 2 G9 U10 A11 U12 A13 RUS14 A15 C16
Unit 3 G1 U2 A3 U4 A5 RUS6 A7 C8
Unit 4 G9 U10 A11 U12 A13 RUS14 A15 C16
Unit 5 G1 U2 A3 U4 A5 RUS6 A7 C8
Unit 6 G9 U10 A11 U12 A13 RUS14 A15 C16
Unit 7 G1 U2 A3 U4 A5 RUS6 A7 C8

Ligands
Unit 8 K9
Unit 9 K9
Unit 10 K2

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany