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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOM COMPLEX WITH MAGNESIUM AND DOLUTEGRAVIR (S/GSK1349572)
Keywords PROTEIN-DNA COMPLEX, TETRAMER, DNA INTEGRATION, ENDONUCLEASE BINDING, MULTIFUNCTIONAL ENZYME, NUCLEASE, NUCLEOTIDYLTRANS NUCLEUS, TRANSFERASE, VIRAL NUCLEOPROTEIN, VIRION, DNA-BIND BINDING, HHCC MOTIF, VIRAL PROTEIN, RECOMBINATION, INHIBITO RECOMBINATION-INHIBITOR-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3S3M     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PFV INTEGRASE  A 368 2934 0
2  Protein   PFV INTEGRASE  B 184 1441 0
3  Other macromolecule   5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*T *A)-3'  C 19 387 0
4  Other macromolecule   5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*A 3'  D 17 345 0
5  Ligand   PFV INTEGRASE  A 10 0 63
6  Ligand   PFV INTEGRASE  B 2 0 13
7 Water     235 0 235
total       835 5107 311

Proteins
Unit 1 LEU8 ASP9 ALA10 GLU11 LEU12 ASP13 GLN14 LEU15 LEU16 GLN17 GLY18 HIS19 TYR20 ILE21 LYS22 GLY23 TYR24 PRO25 LYS26 GLN27 TYR28 THR29 TYR30 PHE31 LEU32 GLU33 ASP34 GLY35 LYS36 VAL37 LYS38 VAL39 SER40 ARG41 PRO42 GLU43 GLY44 VAL45 LYS46 ILE47 ILE48 PRO49 PRO50 GLN51 SER52 ASP53 ARG54 GLN55 LYS56 ILE57 VAL58 LEU59 GLN60 ALA61 HIS62 ASN63 LEU64 ALA65 HIS66 THR67 GLY68 ARG69 GLU70 ALA71 THR72 LEU73 LEU74 LYS75 ILE76 ALA77 ASN78 LEU79 TYR80 TRP81 TRP82 PRO83 ASN84 MET85 ARG86 LYS87 ASP88 VAL89 VAL90 LYS91 GLN92 LEU93 GLY94 ARG95 CYS96 GLN97 GLN98 CYS99 LEU100 ILE101 THR102 ASN103 ALA104 SER105 ASN106 LYS107 ALA108 SER109 GLY110 PRO111 ILE112 LEU113 ARG114 PRO115 ASP116 ARG117 PRO118 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 ILE127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 LYS180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 PRO211 TYR212 HIS213 PRO214 GLN215 SER216 SER217 GLY218 LYS219 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 ILE227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 LEU253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299 THR300 SER301 LEU302 TYR303 HIS304 PRO305 SER306 THR307 PRO308 PRO309 ALA310 SER311 SER312 ARG313 SER314 TRP315 SER316 PRO317 VAL318 VAL319 GLY320 GLN321 LEU322 VAL323 GLN324 GLU325 ARG326 VAL327 ALA328 ARG329 PRO330 ALA331 SER332 LEU333 ARG334 PRO335 ARG336 TRP337 HIS338 LYS339 PRO340 SER341 THR342 VAL343 LEU344 LYS345 VAL346 LEU347 ASN348 PRO349 ARG350 THR351 VAL352 VAL353 ILE354 LEU355 ASP356 HIS357 LEU358 GLY359 ASN360 ASN361 ARG362 THR363 VAL364 SER365 ILE366 ASP367 ASN368 LEU369 LYS370 PRO371 THR372 SER373 HIS374 GLN375
Unit 2 ASP116 ARG117 PRO118 GLN119 LYS120 PRO121 PHE122 ASP123 LYS124 PHE125 PHE126 ILE127 ASP128 TYR129 ILE130 GLY131 PRO132 LEU133 PRO134 PRO135 SER136 GLN137 GLY138 TYR139 LEU140 TYR141 VAL142 LEU143 VAL144 VAL145 VAL146 ASP147 GLY148 MET149 THR150 GLY151 PHE152 THR153 TRP154 LEU155 TYR156 PRO157 THR158 LYS159 ALA160 PRO161 SER162 THR163 SER164 ALA165 THR166 VAL167 LYS168 SER169 LEU170 ASN171 VAL172 LEU173 THR174 SER175 ILE176 ALA177 ILE178 PRO179 LYS180 VAL181 ILE182 HIS183 SER184 ASP185 GLN186 GLY187 ALA188 ALA189 PHE190 THR191 SER192 SER193 THR194 PHE195 ALA196 GLU197 TRP198 ALA199 LYS200 GLU201 ARG202 GLY203 ILE204 HIS205 LEU206 GLU207 PHE208 SER209 THR210 PRO211 TYR212 HIS213 PRO214 GLN215 SER216 SER217 GLY218 LYS219 VAL220 GLU221 ARG222 LYS223 ASN224 SER225 ASP226 ILE227 LYS228 ARG229 LEU230 LEU231 THR232 LYS233 LEU234 LEU235 VAL236 GLY237 ARG238 PRO239 THR240 LYS241 TRP242 TYR243 ASP244 LEU245 LEU246 PRO247 VAL248 VAL249 GLN250 LEU251 ALA252 LEU253 ASN254 ASN255 THR256 TYR257 SER258 PRO259 VAL260 LEU261 LYS262 TYR263 THR264 PRO265 HIS266 GLN267 LEU268 LEU269 PHE270 GLY271 ILE272 ASP273 SER274 ASN275 THR276 PRO277 PHE278 ALA279 ASN280 GLN281 ASP282 THR283 LEU284 ASP285 LEU286 THR287 ARG288 GLU289 GLU290 GLU291 LEU292 SER293 LEU294 LEU295 GLN296 GLU297 ILE298 ARG299

Other macromolecules
Unit 3 DA1 DT2 DT3 DG4 DT5 DC6 DA7 DT8 DG9 DG10 DA11 DA12 DT13 DT14 DT15 DC16 DG17 DC18 DA19
Unit 4 DT1 DG2 DC3 DG4 DA5 DA6 DA7 DT8 DT9 DC10 DC11 DA12 DT13 DG14 DA15 DC16 DA17

Ligands
Unit 5 ZN393 SO4394 NH4395 MG396 MG397 DLU398 GOL801 GOL802 GOL803 GOL805
Unit 6 SO4393 HEZ394

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany