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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF P. VIVAX GERANYLGERANYL DIPHOSPHATE SYN COMPLEXED WITH BPH-811
Keywords TRANSFERASE, GERANYLGERANYL DIPHOSPHATE SYNTHASE, BPH-811
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3RYW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FARNESYL PYROPHOSPHATE SYNTHASE  A 358 2889 0
2  Protein   FARNESYL PYROPHOSPHATE SYNTHASE  B 356 2883 0
3  Protein   FARNESYL PYROPHOSPHATE SYNTHASE  C 355 2893 0
4  Protein   FARNESYL PYROPHOSPHATE SYNTHASE  D 358 2898 0
5  Ligand   FARNESYL PYROPHOSPHATE SYNTHASE  A 5 0 35
6  Ligand   FARNESYL PYROPHOSPHATE SYNTHASE  B 5 0 35
7  Ligand   FARNESYL PYROPHOSPHATE SYNTHASE  C 5 0 35
8  Ligand   FARNESYL PYROPHOSPHATE SYNTHASE  D 5 0 35
9 Water     71 0 71
total       1518 11563 211
Proteins
Unit 1 LEU34 ALA35 PHE36 PHE37 ARG38 ASN39 MET40 TYR41 ASP42 LYS43 TYR44 ARG45 ASP46 ALA47 PHE48 LEU49 SER50 HIS51 LEU52 ASN53 GLU54 TYR55 SER56 LEU57 GLU58 GLU59 GLU60 ILE61 LYS62 GLU63 HIS64 ILE65 SER66 LYS67 TYR68 TYR69 LYS70 LEU71 LEU72 PHE73 ASP74 TYR75 ASN76 CYS77 LEU78 GLY79 GLY80 LYS81 ASN82 ASN83 ARG84 GLY85 ILE86 LEU87 VAL88 ILE89 LEU90 ILE91 TYR92 GLU93 TYR94 VAL95 LYS96 ASN97 ARG98 ILE100 ASN101 SER102 SER103 GLU104 TRP105 GLU106 LYS107 ALA108 ALA109 CYS110 LEU111 ALA112 TRP113 CYS114 ILE115 GLU116 ILE117 LEU118 GLN119 ALA120 ALA121 PHE122 LEU123 VAL124 ALA125 ASP126 ASP127 ILE128 MET129 ASP130 LYS131 GLY132 GLU133 MET134 ARG135 ARG136 ASN137 LYS138 TYR139 CYS140 TRP141 TYR142 LEU143 LEU144 LYS145 ASP146 VAL147 GLU148 THR149 LYS150 ASN151 ALA152 VAL153 ASN154 ASP155 VAL156 LEU157 LEU158 LEU159 TYR160 ASN161 SER162 ILE163 TYR164 LYS165 LEU166 ILE167 GLU168 ILE169 TYR170 LEU171 ARG172 ASN173 GLU174 SER175 CYS176 TYR177 VAL178 ASP179 VAL180 ILE181 ALA182 THR183 PHE184 ARG185 ASP186 ALA187 THR188 LEU189 LYS190 THR191 ILE192 ILE193 GLY194 GLN195 HIS196 LEU197 ASP198 THR199 ASN200 ILE201 PHE202 SER203 ASP204 LYS205 TYR206 SER207 GLU212 ILE213 ASP214 VAL215 ASN216 ASN217 ILE218 ASN219 VAL220 PRO221 GLU222 GLN223 PRO224 VAL225 ILE226 ASP227 ILE228 ASN229 MET230 ILE231 ASN232 PHE233 GLY234 VAL235 TYR236 LYS237 ASN238 ILE239 VAL240 ILE241 HIS242 LYS243 THR244 ALA245 TYR246 TYR247 SER248 PHE249 PHE250 LEU251 PRO252 ILE253 VAL254 CYS255 GLY256 MET257 LEU258 LEU259 ALA260 GLY261 ILE262 ALA263 VAL264 ASP265 ASN266 LEU267 ILE268 TYR269 LYS270 LYS271 ILE272 GLU273 ASP274 ILE275 SER276 MET277 LEU278 MET279 GLY280 GLU281 TYR282 PHE283 GLN284 ILE285 HIS286 ASP287 ASP288 TYR289 LEU290 ASP291 ILE292 PHE293 GLY294 ASP295 SER296 THR297 LYS298 THR299 GLY300 LYS301 VAL302 GLY303 SER304 ASP305 ILE306 GLN307 ASN308 ASN309 LYS310 LEU311 THR312 TRP313 PRO314 LEU315 ILE316 LYS317 THR318 PHE319 GLU320 LEU321 CYS322 SER323 GLU324 PRO325 ASP326 LYS327 ILE328 LYS329 ILE330 VAL331 LYS332 ASN333 TYR334 GLY335 LYS336 ASN337 ASN338 LEU339 ALA340 CYS341 VAL342 LYS343 VAL344 ILE345 ASP346 SER347 LEU348 TYR349 GLU350 GLN351 TYR352 LYS353 ILE354 ARG355 LYS356 HIS357 TYR358 GLU359 SER360 TYR361 GLU362 LYS363 ALA364 GLN365 LYS366 ALA367 LYS368 ILE369 LEU370 SER371 ALA372 ILE373 ASN374 GLU375 LEU376 HIS377 HIS378 GLU379 GLY380 ILE381 GLU382 TYR383 VAL384 LEU385 LYS386 TYR387 LEU388 LEU389 GLU390 ILE391 LEU392 PHE393 THR394 GLY395 VAL396
Unit 2 LEU34 ALA35 PHE36 PHE37 ARG38 ASN39 MET40 TYR41 ASP42 LYS43 TYR44 ARG45 ASP46 ALA47 PHE48 LEU49 SER50 HIS51 LEU52 ASN53 GLU54 TYR55 SER56 LEU57 GLU58 GLU59 GLU60 ILE61 LYS62 GLU63 HIS64 ILE65 SER66 LYS67 TYR68 TYR69 LYS70 LEU71 LEU72 PHE73 ASP74 TYR75 ASN76 CYS77 LEU78 GLY79 GLY80 LYS81 ASN82 ASN83 ARG84 GLY85 ILE86 LEU87 VAL88 ILE89 LEU90 ILE91 TYR92 GLU93 TYR94 VAL95 LYS96 ASN97 ARG98 ILE100 ASN101 SER102 SER103 GLU104 TRP105 GLU106 LYS107 ALA108 ALA109 CYS110 LEU111 ALA112 TRP113 CYS114 ILE115 GLU116 ILE117 LEU118 GLN119 ALA120 ALA121 PHE122 LEU123 VAL124 ALA125 ASP126 ASP127 ILE128 MET129 ASP130 LYS131 GLY132 GLU133 MET134 ARG135 ARG136 ASN137 LYS138 TYR139 CYS140 TRP141 TYR142 LEU143 LEU144 LYS145 ASP146 VAL147 GLU148 THR149 LYS150 ASN151 ALA152 VAL153 ASN154 ASP155 VAL156 LEU157 LEU158 LEU159 TYR160 ASN161 SER162 ILE163 TYR164 LYS165 LEU166 ILE167 GLU168 ILE169 TYR170 LEU171 ARG172 ASN173 GLU174 SER175 CYS176 TYR177 VAL178 ASP179 VAL180 ILE181 ALA182 THR183 PHE184 ARG185 ASP186 ALA187 THR188 LEU189 LYS190 THR191 ILE192 ILE193 GLY194 GLN195 HIS196 LEU197 ASP198 THR199 ASN200 ILE201 PHE202 SER203 ASP204 LYS205 TYR206 SER207 ASP208 GLU212 ILE213 ASP214 VAL215 ASN216 ASN217 ILE218 ASN219 VAL220 PRO221 GLU222 GLN223 PRO224 VAL225 ILE226 ASP227 ILE228 ASN229 MET230 ILE231 ASN232 PHE233 GLY234 VAL235 TYR236 LYS237 ASN238 ILE239 VAL240 ILE241 HIS242 LYS243 THR244 ALA245 TYR246 TYR247 SER248 PHE249 PHE250 LEU251 PRO252 ILE253 VAL254 CYS255 GLY256 MET257 LEU258 LEU259 ALA260 GLY261 ILE262 ALA263 VAL264 ASP265 ASN266 LEU267 ILE268 TYR269 LYS270 LYS271 ILE272 GLU273 ASP274 ILE275 SER276 MET277 LEU278 MET279 GLY280 GLU281 TYR282 PHE283 GLN284 ILE285 HIS286 ASP287 ASP288 TYR289 LEU290 ASP291 ILE292 PHE293 GLY294 ASP295 SER296 THR297 LYS298 THR299 GLY300 LYS301 VAL302 GLY303 SER304 ASP305 ILE306 GLN307 ASN308 ASN309 LYS310 LEU311 THR312 TRP313 PRO314 LEU315 ILE316 LYS317 THR318 PHE319 GLU320 LEU321 CYS322 SER323 GLU324 PRO325 ASP326 LYS327 ILE328 LYS329 ILE330 VAL331 LYS332 ASN333 TYR334 GLY335 LYS336 ASN337 ASN338 LEU339 ALA340 CYS341 VAL342 LYS343 VAL344 ILE345 ASP346 SER347 LEU348 TYR349 GLU350 GLN351 TYR352 LYS353 ILE354 ARG355 LYS356 HIS357 TYR358 GLU359 SER360 TYR361 GLU362 LYS363 ALA364 GLN365 LYS366 ALA367 LYS368 ILE369 LEU370 SER371 ALA372 ILE373 ASN374 GLU375 LEU376 HIS377 HIS378 GLU379 GLY380 ILE381 GLU382 TYR383 VAL384 LEU385 LYS386 TYR387 LEU388 LEU389 GLU390 ILE391 LEU392 PHE393
Unit 3 LEU34 ALA35 PHE36 PHE37 ARG38 ASN39 MET40 TYR41 ASP42 LYS43 TYR44 ARG45 ASP46 ALA47 PHE48 LEU49 SER50 HIS51 LEU52 ASN53 GLU54 TYR55 SER56 LEU57 GLU58 GLU59 GLU60 ILE61 LYS62 GLU63 HIS64 ILE65 SER66 LYS67 TYR68 TYR69 LYS70 LEU71 LEU72 PHE73 ASP74 TYR75 ASN76 CYS77 LEU78 GLY79 GLY80 LYS81 ASN82 ASN83 ARG84 GLY85 ILE86 LEU87 VAL88 ILE89 LEU90 ILE91 TYR92 GLU93 TYR94 VAL95 LYS96 ASN97 ARG98 ILE100 ASN101 SER102 SER103 GLU104 TRP105 GLU106 LYS107 ALA108 ALA109 CYS110 LEU111 ALA112 TRP113 CYS114 ILE115 GLU116 ILE117 LEU118 GLN119 ALA120 ALA121 PHE122 LEU123 VAL124 ALA125 ASP126 ASP127 ILE128 MET129 ASP130 LYS131 GLY132 GLU133 MET134 ARG135 ARG136 ASN137 LYS138 TYR139 CYS140 TRP141 TYR142 LEU143 LEU144 LYS145 ASP146 VAL147 GLU148 THR149 LYS150 ASN151 ALA152 VAL153 ASN154 ASP155 VAL156 LEU157 LEU158 LEU159 TYR160 ASN161 SER162 ILE163 TYR164 LYS165 LEU166 ILE167 GLU168 ILE169 TYR170 LEU171 ARG172 ASN173 GLU174 SER175 CYS176 TYR177 VAL178 ASP179 VAL180 ILE181 ALA182 THR183 PHE184 ARG185 ASP186 ALA187 THR188 LEU189 LYS190 THR191 ILE192 ILE193 GLY194 GLN195 HIS196 LEU197 ASP198 THR199 ASN200 ILE201 PHE202 SER203 ASP204 LYS205 TYR206 SER207 GLU212 ILE213 ASP214 VAL215 ASN216 ASN217 ILE218 ASN219 PRO221 GLU222 GLN223 PRO224 VAL225 ILE226 ASP227 ILE228 ASN229 MET230 ILE231 ASN232 PHE233 GLY234 VAL235 TYR236 LYS237 ASN238 ILE239 VAL240 ILE241 HIS242 LYS243 THR244 ALA245 TYR246 TYR247 SER248 PHE249 PHE250 LEU251 PRO252 ILE253 VAL254 CYS255 GLY256 MET257 LEU258 LEU259 ALA260 GLY261 ILE262 ALA263 VAL264 ASP265 ASN266 LEU267 ILE268 TYR269 LYS270 LYS271 ILE272 GLU273 ASP274 ILE275 SER276 MET277 LEU278 MET279 GLY280 GLU281 TYR282 PHE283 GLN284 ILE285 HIS286 ASP287 ASP288 TYR289 LEU290 ASP291 ILE292 PHE293 GLY294 ASP295 SER296 THR297 LYS298 THR299 GLY300 LYS301 VAL302 GLY303 SER304 ASP305 ILE306 GLN307 ASN308 ASN309 LYS310 LEU311 THR312 TRP313 PRO314 LEU315 ILE316 LYS317 THR318 PHE319 GLU320 LEU321 CYS322 SER323 GLU324 PRO325 ASP326 LYS327 ILE328 LYS329 ILE330 VAL331 LYS332 ASN333 TYR334 GLY335 LYS336 ASN337 ASN338 LEU339 ALA340 CYS341 VAL342 LYS343 VAL344 ILE345 ASP346 SER347 LEU348 TYR349 GLU350 GLN351 TYR352 LYS353 ILE354 ARG355 LYS356 HIS357 TYR358 GLU359 SER360 TYR361 GLU362 LYS363 ALA364 GLN365 LYS366 ALA367 LYS368 ILE369 LEU370 SER371 ALA372 ILE373 ASN374 GLU375 LEU376 HIS377 HIS378 GLU379 GLY380 ILE381 GLU382 TYR383 VAL384 LEU385 LYS386 TYR387 LEU388 LEU389 GLU390 ILE391 LEU392 PHE393 THR394
Unit 4 LEU34 ALA35 PHE36 PHE37 ARG38 ASN39 MET40 TYR41 ASP42 LYS43 TYR44 ARG45 ASP46 ALA47 PHE48 LEU49 SER50 HIS51 LEU52 ASN53 GLU54 TYR55 SER56 LEU57 GLU58 GLU59 GLU60 ILE61 LYS62 GLU63 HIS64 ILE65 SER66 LYS67 TYR68 TYR69 LYS70 LEU71 LEU72 PHE73 ASP74 TYR75 ASN76 CYS77 LEU78 GLY79 GLY80 LYS81 ASN82 ASN83 ARG84 GLY85 ILE86 LEU87 VAL88 ILE89 LEU90 ILE91 TYR92 GLU93 TYR94 VAL95 LYS96 ASN97 ARG98 ILE100 ASN101 SER102 SER103 GLU104 TRP105 GLU106 LYS107 ALA108 ALA109 CYS110 LEU111 ALA112 TRP113 CYS114 ILE115 GLU116 ILE117 LEU118 GLN119 ALA120 ALA121 PHE122 LEU123 VAL124 ALA125 ASP126 ASP127 ILE128 MET129 ASP130 LYS131 GLY132 GLU133 MET134 ARG135 ARG136 ASN137 LYS138 TYR139 CYS140 TRP141 TYR142 LEU143 LEU144 LYS145 ASP146 VAL147 GLU148 THR149 LYS150 ASN151 ALA152 VAL153 ASN154 ASP155 VAL156 LEU157 LEU158 LEU159 TYR160 ASN161 SER162 ILE163 TYR164 LYS165 LEU166 ILE167 GLU168 ILE169 TYR170 LEU171 ARG172 ASN173 GLU174 SER175 CYS176 TYR177 VAL178 ASP179 VAL180 ILE181 ALA182 THR183 PHE184 ARG185 ASP186 ALA187 THR188 LEU189 LYS190 THR191 ILE192 ILE193 GLY194 GLN195 HIS196 LEU197 ASP198 THR199 ASN200 ILE201 PHE202 SER203 ASP204 LYS205 TYR206 SER207 GLU212 ILE213 ASP214 VAL215 ASN216 ASN217 ILE218 ASN219 VAL220 PRO221 GLU222 GLN223 PRO224 VAL225 ILE226 ASP227 ILE228 ASN229 MET230 ILE231 ASN232 PHE233 GLY234 VAL235 TYR236 LYS237 ASN238 ILE239 VAL240 ILE241 HIS242 LYS243 THR244 ALA245 TYR246 TYR247 SER248 PHE249 PHE250 LEU251 PRO252 ILE253 VAL254 CYS255 GLY256 MET257 LEU258 LEU259 ALA260 GLY261 ILE262 ALA263 VAL264 ASP265 ASN266 LEU267 ILE268 TYR269 LYS270 LYS271 ILE272 GLU273 ASP274 ILE275 SER276 MET277 LEU278 MET279 GLY280 GLU281 TYR282 PHE283 GLN284 ILE285 HIS286 ASP287 ASP288 TYR289 LEU290 ASP291 ILE292 PHE293 GLY294 ASP295 SER296 THR297 LYS298 THR299 GLY300 LYS301 VAL302 GLY303 SER304 ASP305 ILE306 GLN307 ASN308 ASN309 LYS310 LEU311 THR312 TRP313 PRO314 LEU315 ILE316 LYS317 THR318 PHE319 GLU320 LEU321 CYS322 SER323 GLU324 PRO325 ASP326 LYS327 ILE328 LYS329 ILE330 VAL331 LYS332 ASN333 TYR334 GLY335 LYS336 ASN337 ASN338 LEU339 ALA340 CYS341 VAL342 LYS343 VAL344 ILE345 ASP346 SER347 LEU348 TYR349 GLU350 GLN351 TYR352 LYS353 ILE354 ARG355 LYS356 HIS357 TYR358 GLU359 SER360 TYR361 GLU362 LYS363 ALA364 GLN365 LYS366 ALA367 LYS368 ILE369 LEU370 SER371 ALA372 ILE373 ASN374 GLU375 LEU376 HIS377 HIS378 GLU379 GLY380 ILE381 GLU382 TYR383 VAL384 LEU385 LYS386 TYR387 LEU388 LEU389 GLU390 ILE391 LEU392 PHE393 THR394 GLY395 VAL396
Ligands
Unit 5 K9H2001 MG2002 MG2003 MG2004 SO42005
Unit 6 K9H2001 MG2002 MG2003 MG2004 SO42005
Unit 7 K9H2001 MG2002 MG2003 MG2004 SO42005
Unit 8 K9H2001 MG2002 MG2003 MG2004 SO42005
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany