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Sequence, Chains, Asymmetric and Biological Units

Title SPECIFIC RECOGNITION OF N-ACETYLATED SUBSTRATES AND DOMAIN F IN WBGU: A UDP-GALNAC 4-EPIMERASE
Keywords NAD(H), UDP-HEXOSE 4-EPIMERASE, DOMAIN FLEXIBILITY, ISOMERAS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3RU9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   WBGU  A 336 2681 0
2  Protein   WBGU  B 336 2681 0
3  Protein   WBGU  C 336 2681 0
4  Protein   WBGU  D 336 2681 0
5  Ligand   WBGU  A 4 0 79
6  Ligand   WBGU  B 2 0 69
7  Protein   WBGU  C 3 0 74
8  Protein   WBGU  D 3 0 74
9 Water     313 0 313
total       1669 10724 609
Proteins
Unit 1 TYR1 MET2 SER3 ARG4 TYR5 GLU6 GLU7 ILE8 THR9 GLN10 GLN11 LEU12 ILE13 PHE14 SER15 PRO16 LYS17 THR18 TRP19 LEU20 ILE21 THR22 GLY23 VAL24 ALA25 GLY26 PHE27 ILE28 GLY29 SER30 ASN31 LEU32 LEU33 GLU34 LYS35 LEU36 LEU37 LYS38 LEU39 ASN40 GLN41 VAL42 VAL43 ILE44 GLY45 LEU46 ASP47 ASN48 PHE49 SER50 THR51 GLY52 HIS53 GLN54 TYR55 ASN56 LEU57 ASP58 GLU59 VAL60 LYS61 THR62 LEU63 VAL64 SER65 THR66 GLU67 GLN68 TRP69 SER70 ARG71 PHE72 CYS73 PHE74 ILE75 GLU76 GLY77 ASP78 ILE79 ARG80 ASP81 LEU82 THR83 THR84 CYS85 GLU86 GLN87 VAL88 MET89 LYS90 GLY91 VAL92 ASP93 HIS94 VAL95 LEU96 HIS97 GLN98 ALA99 ALA100 LEU101 GLY102 SER103 VAL104 PRO105 ARG106 SER107 ILE108 VAL109 ASP110 PRO111 ILE112 THR113 THR114 ASN115 ALA116 THR117 ASN118 ILE119 THR120 GLY121 PHE122 LEU123 ASN124 ILE125 LEU126 HIS127 ALA128 ALA129 LYS130 ASN131 ALA132 GLN133 VAL134 GLN135 SER136 PHE137 THR138 TYR139 ALA140 ALA141 SER142 SER143 SER144 THR145 TYR146 GLY147 ASP148 HIS149 PRO150 ALA151 LEU152 PRO153 LYS154 VAL155 GLU156 GLU157 ASN158 ILE159 GLY160 ASN161 PRO162 LEU163 SER164 PRO165 TYR166 ALA167 VAL168 THR169 LYS170 TYR171 VAL172 ASN173 GLU174 ILE175 TYR176 ALA177 GLN178 VAL179 TYR180 ALA181 ARG182 THR183 TYR184 GLY185 PHE186 LYS187 THR188 ILE189 GLY190 LEU191 ARG192 TYR193 PHE194 ASN195 VAL196 PHE197 GLY198 ARG199 ARG200 GLN201 ASP202 PRO203 ASN204 GLY205 ALA206 TYR207 ALA208 ALA209 VAL210 ILE211 PRO212 LYS213 TRP214 THR215 ALA216 ALA217 MET218 LEU219 LYS220 GLY221 ASP222 ASP223 VAL224 TYR225 ILE226 ASN227 GLY228 ASP229 GLY230 GLU231 THR232 SER233 ARG234 ASP235 PHE236 CYS237 TYR238 ILE239 ASP240 ASN241 VAL242 ILE243 GLN244 MET245 ASN246 ILE247 LEU248 SER249 ALA250 LEU251 ALA252 LYS253 ASP254 SER255 ALA256 LYS257 ASP258 ASN259 ILE260 TYR261 ASN262 VAL263 ALA264 VAL265 GLY266 ASP267 ARG268 THR269 THR270 LEU271 ASN272 GLU273 LEU274 SER275 GLY276 TYR277 ILE278 TYR279 ASP280 GLU281 LEU282 ASN283 LEU284 ILE285 HIS286 HIS287 ILE293 LYS294 TYR295 ARG296 GLU297 PHE298 ARG299 SER300 GLY301 ASP302 VAL303 ARG304 HIS305 SER306 GLN307 ALA308 ASP309 VAL310 THR311 LYS312 ALA313 ILE314 ASP315 LEU316 LEU317 LYS318 TYR319 ARG320 PRO321 ASN322 ILE323 LYS324 ILE325 ARG326 GLU327 GLY328 LEU329 ARG330 LEU331 SER332 MET333 PRO334 TRP335 TYR336 VAL337 ARG338 PHE339 LEU340 LYS341
Unit 2 TYR1 MET2 SER3 ARG4 TYR5 GLU6 GLU7 ILE8 THR9 GLN10 GLN11 LEU12 ILE13 PHE14 SER15 PRO16 LYS17 THR18 TRP19 LEU20 ILE21 THR22 GLY23 VAL24 ALA25 GLY26 PHE27 ILE28 GLY29 SER30 ASN31 LEU32 LEU33 GLU34 LYS35 LEU36 LEU37 LYS38 LEU39 ASN40 GLN41 VAL42 VAL43 ILE44 GLY45 LEU46 ASP47 ASN48 PHE49 SER50 THR51 GLY52 HIS53 GLN54 TYR55 ASN56 LEU57 ASP58 GLU59 VAL60 LYS61 THR62 LEU63 VAL64 SER65 THR66 GLU67 GLN68 TRP69 SER70 ARG71 PHE72 CYS73 PHE74 ILE75 GLU76 GLY77 ASP78 ILE79 ARG80 ASP81 LEU82 THR83 THR84 CYS85 GLU86 GLN87 VAL88 MET89 LYS90 GLY91 VAL92 ASP93 HIS94 VAL95 LEU96 HIS97 GLN98 ALA99 ALA100 LEU101 GLY102 SER103 VAL104 PRO105 ARG106 SER107 ILE108 VAL109 ASP110 PRO111 ILE112 THR113 THR114 ASN115 ALA116 THR117 ASN118 ILE119 THR120 GLY121 PHE122 LEU123 ASN124 ILE125 LEU126 HIS127 ALA128 ALA129 LYS130 ASN131 ALA132 GLN133 VAL134 GLN135 SER136 PHE137 THR138 TYR139 ALA140 ALA141 SER142 SER143 SER144 THR145 TYR146 GLY147 ASP148 HIS149 PRO150 ALA151 LEU152 PRO153 LYS154 VAL155 GLU156 GLU157 ASN158 ILE159 GLY160 ASN161 PRO162 LEU163 SER164 PRO165 TYR166 ALA167 VAL168 THR169 LYS170 TYR171 VAL172 ASN173 GLU174 ILE175 TYR176 ALA177 GLN178 VAL179 TYR180 ALA181 ARG182 THR183 TYR184 GLY185 PHE186 LYS187 THR188 ILE189 GLY190 LEU191 ARG192 TYR193 PHE194 ASN195 VAL196 PHE197 GLY198 ARG199 ARG200 GLN201 ASP202 PRO203 ASN204 GLY205 ALA206 TYR207 ALA208 ALA209 VAL210 ILE211 PRO212 LYS213 TRP214 THR215 ALA216 ALA217 MET218 LEU219 LYS220 GLY221 ASP222 ASP223 VAL224 TYR225 ILE226 ASN227 GLY228 ASP229 GLY230 GLU231 THR232 SER233 ARG234 ASP235 PHE236 CYS237 TYR238 ILE239 ASP240 ASN241 VAL242 ILE243 GLN244 MET245 ASN246 ILE247 LEU248 SER249 ALA250 LEU251 ALA252 LYS253 ASP254 SER255 ALA256 LYS257 ASP258 ASN259 ILE260 TYR261 ASN262 VAL263 ALA264 VAL265 GLY266 ASP267 ARG268 THR269 THR270 LEU271 ASN272 GLU273 LEU274 SER275 GLY276 TYR277 ILE278 TYR279 ASP280 GLU281 LEU282 ASN283 LEU284 ILE285 HIS286 HIS287 ILE293 LYS294 TYR295 ARG296 GLU297 PHE298 ARG299 SER300 GLY301 ASP302 VAL303 ARG304 HIS305 SER306 GLN307 ALA308 ASP309 VAL310 THR311 LYS312 ALA313 ILE314 ASP315 LEU316 LEU317 LYS318 TYR319 ARG320 PRO321 ASN322 ILE323 LYS324 ILE325 ARG326 GLU327 GLY328 LEU329 ARG330 LEU331 SER332 MET333 PRO334 TRP335 TYR336 VAL337 ARG338 PHE339 LEU340 LYS341
Unit 3 TYR1 MET2 SER3 ARG4 TYR5 GLU6 GLU7 ILE8 THR9 GLN10 GLN11 LEU12 ILE13 PHE14 SER15 PRO16 LYS17 THR18 TRP19 LEU20 ILE21 THR22 GLY23 VAL24 ALA25 GLY26 PHE27 ILE28 GLY29 SER30 ASN31 LEU32 LEU33 GLU34 LYS35 LEU36 LEU37 LYS38 LEU39 ASN40 GLN41 VAL42 VAL43 ILE44 GLY45 LEU46 ASP47 ASN48 PHE49 SER50 THR51 GLY52 HIS53 GLN54 TYR55 ASN56 LEU57 ASP58 GLU59 VAL60 LYS61 THR62 LEU63 VAL64 SER65 THR66 GLU67 GLN68 TRP69 SER70 ARG71 PHE72 CYS73 PHE74 ILE75 GLU76 GLY77 ASP78 ILE79 ARG80 ASP81 LEU82 THR83 THR84 CYS85 GLU86 GLN87 VAL88 MET89 LYS90 GLY91 VAL92 ASP93 HIS94 VAL95 LEU96 HIS97 GLN98 ALA99 ALA100 LEU101 GLY102 SER103 VAL104 PRO105 ARG106 SER107 ILE108 VAL109 ASP110 PRO111 ILE112 THR113 THR114 ASN115 ALA116 THR117 ASN118 ILE119 THR120 GLY121 PHE122 LEU123 ASN124 ILE125 LEU126 HIS127 ALA128 ALA129 LYS130 ASN131 ALA132 GLN133 VAL134 GLN135 SER136 PHE137 THR138 TYR139 ALA140 ALA141 SER142 SER143 SER144 THR145 TYR146 GLY147 ASP148 HIS149 PRO150 ALA151 LEU152 PRO153 LYS154 VAL155 GLU156 GLU157 ASN158 ILE159 GLY160 ASN161 PRO162 LEU163 SER164 PRO165 TYR166 ALA167 VAL168 THR169 LYS170 TYR171 VAL172 ASN173 GLU174 ILE175 TYR176 ALA177 GLN178 VAL179 TYR180 ALA181 ARG182 THR183 TYR184 GLY185 PHE186 LYS187 THR188 ILE189 GLY190 LEU191 ARG192 TYR193 PHE194 ASN195 VAL196 PHE197 GLY198 ARG199 ARG200 GLN201 ASP202 PRO203 ASN204 GLY205 ALA206 TYR207 ALA208 ALA209 VAL210 ILE211 PRO212 LYS213 TRP214 THR215 ALA216 ALA217 MET218 LEU219 LYS220 GLY221 ASP222 ASP223 VAL224 TYR225 ILE226 ASN227 GLY228 ASP229 GLY230 GLU231 THR232 SER233 ARG234 ASP235 PHE236 CYS237 TYR238 ILE239 ASP240 ASN241 VAL242 ILE243 GLN244 MET245 ASN246 ILE247 LEU248 SER249 ALA250 LEU251 ALA252 LYS253 ASP254 SER255 ALA256 LYS257 ASP258 ASN259 ILE260 TYR261 ASN262 VAL263 ALA264 VAL265 GLY266 ASP267 ARG268 THR269 THR270 LEU271 ASN272 GLU273 LEU274 SER275 GLY276 TYR277 ILE278 TYR279 ASP280 GLU281 LEU282 ASN283 LEU284 ILE285 HIS286 HIS287 ILE293 LYS294 TYR295 ARG296 GLU297 PHE298 ARG299 SER300 GLY301 ASP302 VAL303 ARG304 HIS305 SER306 GLN307 ALA308 ASP309 VAL310 THR311 LYS312 ALA313 ILE314 ASP315 LEU316 LEU317 LYS318 TYR319 ARG320 PRO321 ASN322 ILE323 LYS324 ILE325 ARG326 GLU327 GLY328 LEU329 ARG330 LEU331 SER332 MET333 PRO334 TRP335 TYR336 VAL337 ARG338 PHE339 LEU340 LYS341
Unit 4 TYR1 MET2 SER3 ARG4 TYR5 GLU6 GLU7 ILE8 THR9 GLN10 GLN11 LEU12 ILE13 PHE14 SER15 PRO16 LYS17 THR18 TRP19 LEU20 ILE21 THR22 GLY23 VAL24 ALA25 GLY26 PHE27 ILE28 GLY29 SER30 ASN31 LEU32 LEU33 GLU34 LYS35 LEU36 LEU37 LYS38 LEU39 ASN40 GLN41 VAL42 VAL43 ILE44 GLY45 LEU46 ASP47 ASN48 PHE49 SER50 THR51 GLY52 HIS53 GLN54 TYR55 ASN56 LEU57 ASP58 GLU59 VAL60 LYS61 THR62 LEU63 VAL64 SER65 THR66 GLU67 GLN68 TRP69 SER70 ARG71 PHE72 CYS73 PHE74 ILE75 GLU76 GLY77 ASP78 ILE79 ARG80 ASP81 LEU82 THR83 THR84 CYS85 GLU86 GLN87 VAL88 MET89 LYS90 GLY91 VAL92 ASP93 HIS94 VAL95 LEU96 HIS97 GLN98 ALA99 ALA100 LEU101 GLY102 SER103 VAL104 PRO105 ARG106 SER107 ILE108 VAL109 ASP110 PRO111 ILE112 THR113 THR114 ASN115 ALA116 THR117 ASN118 ILE119 THR120 GLY121 PHE122 LEU123 ASN124 ILE125 LEU126 HIS127 ALA128 ALA129 LYS130 ASN131 ALA132 GLN133 VAL134 GLN135 SER136 PHE137 THR138 TYR139 ALA140 ALA141 SER142 SER143 SER144 THR145 TYR146 GLY147 ASP148 HIS149 PRO150 ALA151 LEU152 PRO153 LYS154 VAL155 GLU156 GLU157 ASN158 ILE159 GLY160 ASN161 PRO162 LEU163 SER164 PRO165 TYR166 ALA167 VAL168 THR169 LYS170 TYR171 VAL172 ASN173 GLU174 ILE175 TYR176 ALA177 GLN178 VAL179 TYR180 ALA181 ARG182 THR183 TYR184 GLY185 PHE186 LYS187 THR188 ILE189 GLY190 LEU191 ARG192 TYR193 PHE194 ASN195 VAL196 PHE197 GLY198 ARG199 ARG200 GLN201 ASP202 PRO203 ASN204 GLY205 ALA206 TYR207 ALA208 ALA209 VAL210 ILE211 PRO212 LYS213 TRP214 THR215 ALA216 ALA217 MET218 LEU219 LYS220 GLY221 ASP222 ASP223 VAL224 TYR225 ILE226 ASN227 GLY228 ASP229 GLY230 GLU231 THR232 SER233 ARG234 ASP235 PHE236 CYS237 TYR238 ILE239 ASP240 ASN241 VAL242 ILE243 GLN244 MET245 ASN246 ILE247 LEU248 SER249 ALA250 LEU251 ALA252 LYS253 ASP254 SER255 ALA256 LYS257 ASP258 ASN259 ILE260 TYR261 ASN262 VAL263 ALA264 VAL265 GLY266 ASP267 ARG268 THR269 THR270 LEU271 ASN272 GLU273 LEU274 SER275 GLY276 TYR277 ILE278 TYR279 ASP280 GLU281 LEU282 ASN283 LEU284 ILE285 HIS286 HIS287 ILE293 LYS294 TYR295 ARG296 GLU297 PHE298 ARG299 SER300 GLY301 ASP302 VAL303 ARG304 HIS305 SER306 GLN307 ALA308 ASP309 VAL310 THR311 LYS312 ALA313 ILE314 ASP315 LEU316 LEU317 LYS318 TYR319 ARG320 PRO321 ASN322 ILE323 LYS324 ILE325 ARG326 GLU327 GLY328 LEU329 ARG330 LEU331 SER332 MET333 PRO334 TRP335 TYR336 VAL337 ARG338 PHE339 LEU340 LYS341
Unit 7 NAD343 UNL344 GLY345
Unit 8 NAD343 UNL344 GLY345
Ligands
Unit 5 NAD343 UNL344 SO4345 SO4346
Unit 6 NAD343 UNL344
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany