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Sequence, Chains, Asymmetric and Biological Units

Title A RING E3-SUBSTRATE COMPLEX POISED FOR UBIQUITIN-LIKE PROTEI TRANSFER: STRUCTURAL INSIGHTS INTO CULLIN-RING LIGASES
Keywords UBIQUITIN, NEDD8, CULLIN, UBL CONJUGATION PATHWAY, E3 LIGASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3RTR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CULLIN-1  A 353 2870 0
2  Protein   E3 UBIQUITIN-PROTEIN LIGASE RBX1  B 86 713 0
3  Protein   CULLIN-1  C 317 2592 0
4  Protein   E3 UBIQUITIN-PROTEIN LIGASE RBX1  D 79 658 0
5  Protein   CULLIN-1  E 359 2918 0
6  Protein   E3 UBIQUITIN-PROTEIN LIGASE RBX1  F 81 684 0
7  Protein   CULLIN-1  G 360 2937 0
8  Protein   E3 UBIQUITIN-PROTEIN LIGASE RBX1  H 81 671 0
9  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RBX1  F 3 0 3
10  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RBX1  D 3 0 3
11  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RBX1  B 3 0 3
12  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RBX1  H 3 0 3
total       1728 14043 12

Proteins
Unit 1 SER418 PRO419 GLU420 GLU421 LEU422 ALA423 ARG424 TYR425 CYS426 ASP427 SER428 LEU429 LEU430 LYS431 LYS432 GLU439 ALA440 GLU441 LEU442 GLU443 ASP444 THR445 LEU446 ASN447 GLN448 VAL449 MET450 GLU451 LYS452 PHE453 LYS454 LYS455 ILE456 GLU457 ASP458 LYS459 ASP460 VAL461 PHE462 GLN463 LYS464 PHE465 TYR466 ALA467 LYS468 MET469 LEU470 ALA471 LYS472 ARG473 LEU474 VAL475 HIS476 GLN477 ASN478 SER479 ALA480 SER481 ASP482 ASP483 ALA484 GLU485 ALA486 SER487 MET488 ILE489 SER490 LYS491 LEU492 LYS493 GLN494 ALA495 CYS496 GLY497 PHE498 GLU499 TYR500 THR501 SER502 LYS503 LEU504 GLN505 ARG506 MET507 PHE508 GLN509 ASP510 ILE511 GLY512 VAL513 SER514 LYS515 ASP516 LEU517 ASN518 GLU519 GLN520 PHE521 LYS522 LYS523 HIS524 LEU525 THR526 ASN527 SER528 GLU529 PRO530 LEU531 ASP532 LEU533 ASP534 PHE535 SER536 ILE537 GLN538 VAL539 LEU540 SER541 SER542 GLY543 SER544 TRP545 PRO546 PHE547 GLN548 GLN549 SER550 CYS551 THR552 PHE553 ALA554 LEU555 PRO556 SER557 GLU558 LEU559 GLU560 ARG561 SER562 TYR563 GLN564 ARG565 PHE566 THR567 ALA568 PHE569 TYR570 ALA571 SER572 ARG573 HIS574 SER575 GLY576 ARG577 LYS578 LEU579 THR580 TRP581 LEU582 TYR583 GLN584 LEU585 SER586 LYS587 GLY588 GLU589 LEU590 VAL591 THR592 ASN593 CYS594 PHE595 LYS596 ASN597 ARG598 TYR599 THR600 LEU601 GLN602 ALA603 SER604 THR605 PHE606 GLN607 MET608 ALA609 ILE610 LEU611 LEU612 GLN613 TYR614 ASN615 THR616 GLU617 ASP618 ALA619 TYR620 THR621 VAL622 GLN623 GLN624 LEU625 THR626 ASP627 SER628 THR629 GLN630 ILE631 LYS632 MET633 ASP634 ILE635 LEU636 ALA637 GLN638 VAL639 LEU640 GLN641 ILE642 LEU643 LEU644 LYS645 SER646 LYS647 LEU648 LEU649 VAL650 LEU651 GLU652 ASP653 GLU654 ASN655 ALA656 ASN657 VAL658 ASP659 GLU660 VAL661 GLU662 LEU663 LYS664 PRO665 ASP666 THR667 LEU668 ILE669 LYS670 LEU671 TYR672 LEU673 GLY674 TYR675 LYS676 ASN677 LYS678 LYS679 LEU680 ARG681 VAL682 ASN683 ILE684 ASN685 VAL686 PRO687 MET688 LYS689 THR690 GLU691 GLN692 LYS693 GLN694 GLU695 GLN696 GLU697 THR698 THR699 HIS700 LYS701 ASN702 ILE703 GLU704 GLU705 ASP706 ARG707 LYS708 LEU709 LEU710 ILE711 GLN712 ALA713 ALA714 ILE715 VAL716 ARG717 ILE718 MET719 LYS720 MET721 ARG722 LYS723 VAL724 LEU725 LYS726 HIS727 GLN728 GLN729 LEU730 LEU731 GLY732 GLU733 VAL734 LEU735 THR736 GLN737 LEU738 SER739 SER740 ARG741 PHE742 LYS743 PRO744 ARG745 VAL746 PRO747 VAL748 ILE749 LYS750 LYS751 CYS752 ILE753 ASP754 ILE755 LEU756 ILE757 GLU758 LYS759 GLU760 TYR761 LEU762 GLU763 ARG764 VAL765 ASP766 GLY767 GLU768 LYS769 ASP770 THR771 TYR772 SER773 TYR774 LEU775 ALA776
Unit 2 ARG21 PHE22 GLU23 VAL24 LYS25 LYS26 TRP27 ASN28 ALA29 VAL30 ALA31 LEU32 TRP33 ALA34 TRP35 ASP36 ILE37 VAL38 VAL39 ASP40 ASN41 CYS42 ALA43 ILE44 CYS45 ARG46 ASN47 HIS48 ILE49 MET50 ASP51 LEU52 CYS53 ILE54 GLU55 CYS56 GLN57 ALA58 ASN59 GLN60 ALA61 SER62 ALA63 THR64 SER65 GLU66 GLU67 CYS68 THR69 VAL70 ALA71 TRP72 GLY73 VAL74 CYS75 ASN76 HIS77 ALA78 PHE79 HIS80 PHE81 HIS82 CYS83 ILE84 SER85 ARG86 TRP87 LEU88 LYS89 THR90 ARG91 GLN92 VAL93 CYS94 PRO95 LEU96 ASP97 ASN98 ARG99 GLU100 TRP101 GLU102 PHE103 GLN104 LYS105 TYR106
Unit 3 PRO419 GLU420 GLU421 LEU422 ALA423 ARG424 TYR425 CYS426 ASP427 SER428 LEU429 LEU430 LYS431 LYS432 GLU441 LEU442 GLU443 ASP444 THR445 LEU446 ASN447 GLN448 VAL449 MET450 GLU451 LYS452 PHE453 LYS454 LYS455 ILE456 GLU457 ASP458 LYS459 ASP460 VAL461 PHE462 GLN463 LYS464 PHE465 TYR466 ALA467 LYS468 MET469 LEU470 ALA471 LYS472 ARG473 LEU474 VAL475 HIS476 GLN477 ASN478 SER479 ALA480 SER481 ASP482 ASP483 ALA484 GLU485 ALA486 SER487 MET488 ILE489 SER490 LYS491 LEU492 LYS493 GLN494 ALA495 GLU499 TYR500 THR501 SER502 LYS503 LEU504 GLN505 ARG506 MET507 PHE508 GLN509 ASP510 ILE511 GLY512 VAL513 SER514 LYS515 ASP516 LEU517 ASN518 GLU519 GLN520 PHE521 LYS522 LYS523 HIS524 LEU525 THR526 ASN527 SER528 GLU529 PRO530 LEU531 ASP532 LEU533 ASP534 PHE535 SER536 ILE537 GLN538 VAL539 LEU540 SER541 SER542 GLY543 SER544 TRP545 PRO546 PHE547 GLN548 GLN549 SER550 CYS551 THR552 PHE553 ALA554 LEU555 PRO556 SER557 GLU558 LEU559 GLU560 ARG561 SER562 TYR563 GLN564 ARG565 PHE566 THR567 ALA568 PHE569 TYR570 ALA571 SER572 ARG573 HIS574 SER575 GLY576 ARG577 LYS578 LEU579 THR580 TRP581 LEU582 TYR583 GLN584 LEU585 SER586 LYS587 GLY588 GLU589 LEU590 ALA603 SER604 THR605 PHE606 GLN607 MET608 ALA609 ILE610 LEU611 LEU612 GLN613 TYR614 TYR620 THR621 VAL622 GLN623 GLN624 LEU625 THR626 ASP627 SER628 THR629 GLN630 ILE631 LYS632 MET633 ASP634 ILE635 LEU636 ALA637 GLN638 VAL639 LEU640 GLN641 ILE642 LEU643 LEU644 LYS645 SER646 LYS647 LEU648 LEU649 ASP653 GLU654 ASN655 ALA656 ASN657 VAL658 ASP659 GLU660 VAL661 LYS664 PRO665 ASP666 THR667 LEU668 ILE669 LYS670 GLY674 TYR675 LYS676 ASN677 ASN683 ILE684 ASN685 VAL686 PRO687 MET688 LYS689 THR690 GLU691 GLN692 LYS693 GLN694 GLU695 GLN696 GLU697 THR698 THR699 HIS700 LYS701 ASN702 ILE703 GLU704 GLU705 ASP706 ARG707 LYS708 LEU709 LEU710 ILE711 GLN712 ALA713 ALA714 ILE715 VAL716 ARG717 ILE718 MET719 LYS720 MET721 ARG722 LYS723 VAL724 LEU725 LYS726 HIS727 GLN728 GLN729 LEU730 LEU731 GLY732 GLU733 VAL734 LEU735 THR736 GLN737 LEU738 SER739 SER740 ARG741 PHE742 LYS743 PRO744 ARG745 VAL746 PRO747 VAL748 ILE749 LYS750 LYS751 CYS752 ILE753 ASP754 ILE755 LEU756 ILE757 GLU758 LYS759 GLU760 TYR761 LEU762 GLU763 ARG764 VAL765 ASP766 GLY767 GLU768 LYS769 ASP770 THR771 TYR772 SER773 TYR774 LEU775 ALA776
Unit 4 VAL24 LYS25 LYS26 TRP27 ASN28 ALA29 VAL30 ALA31 LEU32 TRP33 ALA34 TRP35 ASP36 ILE37 VAL38 VAL39 ASP40 ASN41 CYS42 ALA43 ILE44 CYS45 ARG46 ASN47 HIS48 ILE49 MET50 ASP51 LEU52 CYS53 ILE54 GLU55 CYS56 GLN57 ALA58 ASN59 GLN60 ALA61 GLU66 GLU67 CYS68 THR69 VAL70 ALA71 TRP72 GLY73 VAL74 CYS75 ASN76 HIS77 ALA78 PHE79 HIS80 PHE81 HIS82 CYS83 ILE84 SER85 ARG86 TRP87 LEU88 LYS89 THR90 ARG91 GLN92 VAL93 CYS94 PRO95 LEU96 ASP97 ASN98 ARG99 GLU100 TRP101 GLU102 PHE103 GLN104 LYS105 TYR106
Unit 5 SER418 PRO419 GLU420 GLU421 LEU422 ALA423 ARG424 TYR425 CYS426 ASP427 SER428 LEU429 LEU430 LYS431 LYS432 SER433 SER434 LYS435 ASN436 PRO437 GLU438 GLU439 ALA440 GLU441 LEU442 GLU443 ASP444 THR445 LEU446 ASN447 GLN448 VAL449 MET450 GLU451 LYS452 PHE453 LYS454 LYS455 ILE456 GLU457 ASP458 LYS459 ASP460 VAL461 PHE462 GLN463 LYS464 PHE465 TYR466 ALA467 LYS468 MET469 LEU470 ALA471 LYS472 ARG473 LEU474 VAL475 HIS476 GLN477 ASN478 SER479 ALA480 SER481 ASP482 ASP483 ALA484 GLU485 ALA486 SER487 MET488 ILE489 SER490 LYS491 LEU492 LYS493 GLN494 ALA495 CYS496 GLY497 PHE498 GLU499 TYR500 THR501 SER502 LYS503 LEU504 GLN505 ARG506 MET507 PHE508 GLN509 ASP510 ILE511 GLY512 VAL513 SER514 LYS515 ASP516 LEU517 ASN518 GLU519 GLN520 PHE521 LYS522 LYS523 HIS524 LEU525 THR526 ASN527 SER528 GLU529 PRO530 LEU531 ASP532 LEU533 ASP534 PHE535 SER536 ILE537 GLN538 VAL539 LEU540 SER541 SER542 GLY543 SER544 TRP545 PRO546 PHE547 GLN548 GLN549 SER550 CYS551 THR552 PHE553 ALA554 LEU555 PRO556 SER557 GLU558 LEU559 GLU560 ARG561 SER562 TYR563 GLN564 ARG565 PHE566 THR567 ALA568 PHE569 TYR570 ALA571 SER572 ARG573 HIS574 SER575 GLY576 ARG577 LYS578 LEU579 THR580 TRP581 LEU582 TYR583 GLN584 LEU585 SER586 LYS587 GLY588 GLU589 LEU590 VAL591 THR592 ASN593 CYS594 PHE595 LYS596 ASN597 ARG598 TYR599 THR600 LEU601 GLN602 ALA603 SER604 THR605 PHE606 GLN607 MET608 ALA609 ILE610 LEU611 LEU612 GLN613 TYR614 ASN615 THR616 GLU617 ASP618 ALA619 TYR620 THR621 VAL622 GLN623 GLN624 LEU625 THR626 ASP627 SER628 THR629 GLN630 ILE631 LYS632 MET633 ASP634 ILE635 LEU636 ALA637 GLN638 VAL639 LEU640 GLN641 ILE642 LEU643 LEU644 LYS645 SER646 LYS647 LEU648 LEU649 VAL650 LEU651 GLU652 ASP653 GLU654 ASN655 ALA656 ASN657 VAL658 ASP659 GLU660 VAL661 GLU662 LEU663 LYS664 PRO665 ASP666 THR667 LEU668 ILE669 LYS670 LEU671 TYR672 LEU673 GLY674 TYR675 LYS676 ASN677 LYS678 LYS679 LEU680 ARG681 VAL682 ASN683 ILE684 ASN685 VAL686 PRO687 MET688 LYS689 THR690 GLU691 GLN692 LYS693 GLN694 GLU695 GLN696 GLU697 THR698 THR699 HIS700 LYS701 ASN702 ILE703 GLU704 GLU705 ASP706 ARG707 LYS708 LEU709 LEU710 ILE711 GLN712 ALA713 ALA714 ILE715 VAL716 ARG717 ILE718 MET719 LYS720 MET721 ARG722 LYS723 VAL724 LEU725 LYS726 HIS727 GLN728 GLN729 LEU730 LEU731 GLY732 GLU733 VAL734 LEU735 THR736 GLN737 LEU738 SER739 SER740 ARG741 PHE742 LYS743 PRO744 ARG745 VAL746 PRO747 VAL748 ILE749 LYS750 LYS751 CYS752 ILE753 ASP754 ILE755 LEU756 ILE757 GLU758 LYS759 GLU760 TYR761 LEU762 GLU763 ARG764 VAL765 ASP766 GLY767 GLU768 LYS769 ASP770 THR771 TYR772 SER773 TYR774 LEU775 ALA776
Unit 6 ARG21 PHE22 GLU23 VAL24 LYS25 LYS26 TRP27 ASN28 ALA29 VAL30 ALA31 LEU32 TRP33 ALA34 TRP35 ASP36 ILE37 VAL38 VAL39 ASP40 ASN41 CYS42 ALA43 ILE44 CYS45 ARG46 ASN47 HIS48 ILE49 MET50 ASP51 LEU52 CYS53 ILE54 GLU55 CYS56 GLN57 ALA58 ASN59 GLN60 GLU66 GLU67 CYS68 THR69 VAL70 ALA71 TRP72 GLY73 VAL74 CYS75 ASN76 HIS77 ALA78 PHE79 HIS80 PHE81 HIS82 CYS83 ILE84 SER85 ARG86 TRP87 LEU88 LYS89 THR90 ARG91 GLN92 VAL93 CYS94 PRO95 LEU96 ASP97 ASN98 ARG99 GLU100 TRP101 GLU102 PHE103 GLN104 LYS105 TYR106
Unit 7 LYS417 SER418 PRO419 GLU420 GLU421 LEU422 ALA423 ARG424 TYR425 CYS426 ASP427 SER428 LEU429 LEU430 LYS431 LYS432 SER433 SER434 LYS435 ASN436 PRO437 GLU438 GLU439 ALA440 GLU441 LEU442 GLU443 ASP444 THR445 LEU446 ASN447 GLN448 VAL449 MET450 GLU451 LYS452 PHE453 LYS454 LYS455 ILE456 GLU457 ASP458 LYS459 ASP460 VAL461 PHE462 GLN463 LYS464 PHE465 TYR466 ALA467 LYS468 MET469 LEU470 ALA471 LYS472 ARG473 LEU474 VAL475 HIS476 GLN477 ASN478 SER479 ALA480 SER481 ASP482 ASP483 ALA484 GLU485 ALA486 SER487 MET488 ILE489 SER490 LYS491 LEU492 LYS493 GLN494 ALA495 CYS496 GLY497 PHE498 GLU499 TYR500 THR501 SER502 LYS503 LEU504 GLN505 ARG506 MET507 PHE508 GLN509 ASP510 ILE511 GLY512 VAL513 SER514 LYS515 ASP516 LEU517 ASN518 GLU519 GLN520 PHE521 LYS522 LYS523 HIS524 LEU525 THR526 ASN527 SER528 GLU529 PRO530 LEU531 ASP532 LEU533 ASP534 PHE535 SER536 ILE537 GLN538 VAL539 LEU540 SER541 SER542 GLY543 SER544 TRP545 PRO546 PHE547 GLN548 GLN549 SER550 CYS551 THR552 PHE553 ALA554 LEU555 PRO556 SER557 GLU558 LEU559 GLU560 ARG561 SER562 TYR563 GLN564 ARG565 PHE566 THR567 ALA568 PHE569 TYR570 ALA571 SER572 ARG573 HIS574 SER575 GLY576 ARG577 LYS578 LEU579 THR580 TRP581 LEU582 TYR583 GLN584 LEU585 SER586 LYS587 GLY588 GLU589 LEU590 VAL591 THR592 ASN593 CYS594 PHE595 LYS596 ASN597 ARG598 TYR599 THR600 LEU601 GLN602 ALA603 SER604 THR605 PHE606 GLN607 MET608 ALA609 ILE610 LEU611 LEU612 GLN613 TYR614 ASN615 THR616 GLU617 ASP618 ALA619 TYR620 THR621 VAL622 GLN623 GLN624 LEU625 THR626 ASP627 SER628 THR629 GLN630 ILE631 LYS632 MET633 ASP634 ILE635 LEU636 ALA637 GLN638 VAL639 LEU640 GLN641 ILE642 LEU643 LEU644 LYS645 SER646 LYS647 LEU648 LEU649 VAL650 LEU651 GLU652 ASP653 GLU654 ASN655 ALA656 ASN657 VAL658 ASP659 GLU660 VAL661 GLU662 LEU663 LYS664 PRO665 ASP666 THR667 LEU668 ILE669 LYS670 LEU671 TYR672 LEU673 GLY674 TYR675 LYS676 ASN677 LYS678 LYS679 LEU680 ARG681 VAL682 ASN683 ILE684 ASN685 VAL686 PRO687 MET688 LYS689 THR690 GLU691 GLN692 LYS693 GLN694 GLU695 GLN696 GLU697 THR698 THR699 HIS700 LYS701 ASN702 ILE703 GLU704 GLU705 ASP706 ARG707 LYS708 LEU709 LEU710 ILE711 GLN712 ALA713 ALA714 ILE715 VAL716 ARG717 ILE718 MET719 LYS720 MET721 ARG722 LYS723 VAL724 LEU725 LYS726 HIS727 GLN728 GLN729 LEU730 LEU731 GLY732 GLU733 VAL734 LEU735 THR736 GLN737 LEU738 SER739 SER740 ARG741 PHE742 LYS743 PRO744 ARG745 VAL746 PRO747 VAL748 ILE749 LYS750 LYS751 CYS752 ILE753 ASP754 ILE755 LEU756 ILE757 GLU758 LYS759 GLU760 TYR761 LEU762 GLU763 ARG764 VAL765 ASP766 GLY767 GLU768 LYS769 ASP770 THR771 TYR772 SER773 TYR774 LEU775 ALA776
Unit 8 LYS20 ARG21 PHE22 GLU23 VAL24 LYS25 LYS26 TRP27 ASN28 ALA29 VAL30 ALA31 LEU32 TRP33 ALA34 TRP35 ASP36 ILE37 VAL38 VAL39 ASP40 ASN41 CYS42 ALA43 ILE44 CYS45 ARG46 ASN47 HIS48 ILE49 MET50 ASP51 LEU52 CYS53 ILE54 GLU55 CYS56 GLN57 ALA58 ASN59 GLN60 ALA61 GLU66 GLU67 CYS68 THR69 VAL70 ALA71 TRP72 GLY73 VAL74 CYS75 ASN76 HIS77 ALA78 PHE79 HIS80 PHE81 HIS82 CYS83 ILE84 SER85 ARG86 TRP87 LEU88 LYS89 THR90 ARG91 GLN92 VAL93 CYS94 PRO95 LEU96 ASP97 ASN98 ARG99 GLU100 TRP101 GLU102 PHE103 GLN104

Ligands
Unit 9 ZN204 ZN208 ZN212
Unit 10 ZN201 ZN205 ZN209
Unit 11 ZN202 ZN206 ZN210
Unit 12 ZN203 ZN207 ZN211

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany