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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HCR/D W1238A MUTANT
Keywords BOTULINUM NEUROTOXIN, GANGLIOSIDE BINDING LOOP, W1238A, TOXI
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3RMY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BOTULINUM NEUROTOXIN TYPE D  A 401 3284 0
2  Protein   BOTULINUM NEUROTOXIN TYPE D  B 398 3263 0
3  Protein   BOTULINUM NEUROTOXIN TYPE D  C 403 3286 0
4  Protein   BOTULINUM NEUROTOXIN TYPE D  D 404 3294 0
5  Ligand   BOTULINUM NEUROTOXIN TYPE D  A 1 0 6
6  Ligand   BOTULINUM NEUROTOXIN TYPE D  C 1 0 6
7  Ligand   BOTULINUM NEUROTOXIN TYPE D  D 1 0 6
8 Water     207 0 207
total       1816 13127 225
Proteins
Unit 1 ASN862 SER863 ILE864 ASN865 ASP866 SER867 LYS868 ILE869 LEU870 SER871 LEU872 GLN873 ASN874 LYS875 LYS876 ASN877 ALA878 LEU879 VAL880 ASP881 THR882 SER883 GLY884 TYR885 ASN886 ALA887 GLU888 VAL889 ARG890 VAL891 GLY892 ASP893 ASN894 VAL895 GLN896 LEU897 ASN898 THR899 ILE900 TYR901 THR902 ASN903 ASP904 PHE905 LYS906 LEU907 SER908 SER909 SER910 GLY911 ASP912 LYS913 ILE914 ILE915 VAL916 ASN917 LEU918 ASN919 ASN920 ASN921 ILE922 ALA926 ILE927 TYR928 GLU929 ASN930 SER931 SER932 VAL933 SER934 PHE935 TRP936 ILE937 LYS938 ILE939 SER940 LYS941 ASP942 LEU943 THR944 ASN945 SER946 HIS947 ASN948 GLU949 TYR950 THR951 ILE952 ILE953 ASN954 SER955 ILE956 GLU957 GLN958 ASN959 SER960 GLY961 TRP962 LYS963 LEU964 CYS965 ILE966 ARG967 ASN968 GLY969 ASN970 ILE971 GLU972 TRP973 ILE974 LEU975 GLN976 ASP977 VAL978 ASN979 ARG980 LYS981 TYR982 LYS983 SER984 LEU985 ILE986 PHE987 ASP988 TYR989 SER990 GLU991 SER992 LEU993 SER994 HIS995 THR996 GLY997 TYR998 THR999 ASN1000 LYS1001 TRP1002 PHE1003 PHE1004 VAL1005 THR1006 ILE1007 THR1008 ASN1009 ASN1010 ILE1011 MET1012 GLY1013 TYR1014 MET1015 LYS1016 LEU1017 TYR1018 ILE1019 ASN1020 GLY1021 GLU1022 LEU1023 LYS1024 GLN1025 SER1026 GLN1027 LYS1028 ILE1029 GLU1030 ASP1031 LEU1032 ASP1033 GLU1034 VAL1035 LYS1036 LEU1037 ASP1038 LYS1039 THR1040 ILE1041 VAL1042 PHE1043 GLY1044 ILE1045 ASP1046 GLU1047 ASN1048 ILE1049 ASP1050 GLU1051 ASN1052 GLN1053 MET1054 LEU1055 TRP1056 ILE1057 ARG1058 ASP1059 PHE1060 ASN1061 ILE1062 PHE1063 SER1064 LYS1065 GLU1066 LEU1067 SER1068 ASN1069 GLU1070 ASP1071 ILE1072 ASN1073 ILE1074 VAL1075 TYR1076 GLU1077 GLY1078 GLN1079 ILE1080 LEU1081 ARG1082 ASN1083 VAL1084 ILE1085 LYS1086 ASP1087 TYR1088 TRP1089 GLY1090 ASN1091 PRO1092 LEU1093 LYS1094 PHE1095 ASP1096 THR1097 GLU1098 TYR1099 TYR1100 ILE1101 ILE1102 ASN1103 ASP1104 ASN1105 TYR1106 ILE1107 ASP1108 ARG1109 TYR1110 ILE1111 ALA1112 PRO1113 GLU1114 SER1115 ASN1116 VAL1117 LEU1118 VAL1119 LEU1120 VAL1121 GLN1122 TYR1123 PRO1124 ASP1125 ARG1126 SER1127 LYS1128 LEU1129 TYR1130 THR1131 GLY1132 ASN1133 PRO1134 ILE1135 THR1136 ILE1137 LYS1138 SER1139 VAL1140 SER1141 ASP1142 LYS1143 ASN1144 PRO1145 TYR1146 SER1147 ARG1148 ILE1149 LEU1150 ASN1151 GLY1152 ASP1153 ASN1154 ILE1155 ILE1156 LEU1157 HIS1158 MET1159 LEU1160 TYR1161 ASN1162 SER1163 ARG1164 LYS1165 TYR1166 MET1167 ILE1168 ILE1169 ARG1170 ASP1171 THR1172 ASP1173 THR1174 ILE1175 TYR1176 ALA1177 CYS1183 SER1184 GLN1185 ASN1186 CYS1187 VAL1188 TYR1189 ALA1190 LEU1191 LYS1192 LEU1193 GLN1194 SER1195 ASN1196 LEU1197 GLY1198 ASN1199 TYR1200 GLY1201 ILE1202 GLY1203 ILE1204 PHE1205 SER1206 ILE1207 LYS1208 ASN1209 ILE1210 VAL1211 SER1212 LYS1213 ASN1214 LYS1215 TYR1216 CYS1217 SER1218 GLN1219 ILE1220 PHE1221 SER1222 SER1223 PHE1224 ARG1225 GLU1226 ASN1227 THR1228 MET1229 LEU1230 LEU1231 ALA1232 ASP1233 ILE1234 TYR1235 LYS1236 LYS1243 ASN1244 ALA1245 TYR1246 THR1247 PRO1248 VAL1249 ALA1250 VAL1251 THR1252 ASN1253 TYR1254 GLU1255 THR1256 LYS1257 LEU1258 LEU1259 SER1260 THR1261 SER1262 SER1263 PHE1264 TRP1265 LYS1266 PHE1267 ILE1268 SER1269 ARG1270 ASP1271 PRO1272 GLY1273 TRP1274 VAL1275 GLU1276
Unit 2 ASN862 SER863 ILE864 ASN865 ASP866 SER867 LYS868 ILE869 LEU870 SER871 LEU872 GLN873 ASN874 LYS875 LYS876 ASN877 ALA878 LEU879 VAL880 ASP881 THR882 SER883 GLY884 TYR885 ASN886 ALA887 GLU888 VAL889 ARG890 VAL891 GLY892 ASP893 ASN894 VAL895 GLN896 LEU897 ASN898 THR899 ILE900 TYR901 THR902 ASN903 ASP904 PHE905 LYS906 LEU907 SER908 SER909 SER910 GLY911 ASP912 LYS913 ILE914 ILE915 VAL916 ASN917 LEU918 ASN919 ASN920 ASN921 TYR928 GLU929 ASN930 SER931 SER932 VAL933 SER934 PHE935 TRP936 ILE937 LYS938 ILE939 SER940 LYS941 ASP942 LEU943 THR944 ASN945 SER946 HIS947 ASN948 GLU949 TYR950 THR951 ILE952 ILE953 ASN954 SER955 ILE956 GLU957 GLN958 ASN959 SER960 GLY961 TRP962 LYS963 LEU964 CYS965 ILE966 ARG967 ASN968 GLY969 ASN970 ILE971 GLU972 TRP973 ILE974 LEU975 GLN976 ASP977 VAL978 ASN979 ARG980 LYS981 TYR982 LYS983 SER984 LEU985 ILE986 PHE987 ASP988 TYR989 SER990 GLU991 SER992 LEU993 SER994 HIS995 THR996 GLY997 TYR998 THR999 ASN1000 LYS1001 TRP1002 PHE1003 PHE1004 VAL1005 THR1006 ILE1007 THR1008 ASN1009 ASN1010 ILE1011 MET1012 GLY1013 TYR1014 MET1015 LYS1016 LEU1017 TYR1018 ILE1019 ASN1020 GLY1021 GLU1022 LEU1023 LYS1024 GLN1025 SER1026 GLN1027 LYS1028 ILE1029 GLU1030 ASP1031 LEU1032 ASP1033 GLU1034 VAL1035 LYS1036 LEU1037 ASP1038 LYS1039 THR1040 ILE1041 VAL1042 PHE1043 GLY1044 ILE1045 ASP1046 GLU1047 ASN1048 ILE1049 ASP1050 GLU1051 ASN1052 GLN1053 MET1054 LEU1055 TRP1056 ILE1057 ARG1058 ASP1059 PHE1060 ASN1061 ILE1062 PHE1063 SER1064 LYS1065 GLU1066 LEU1067 SER1068 ASN1069 GLU1070 ASP1071 ILE1072 ASN1073 ILE1074 VAL1075 TYR1076 GLU1077 GLY1078 GLN1079 ILE1080 LEU1081 ARG1082 ASN1083 VAL1084 ILE1085 LYS1086 ASP1087 TYR1088 TRP1089 GLY1090 ASN1091 PRO1092 LEU1093 LYS1094 PHE1095 ASP1096 THR1097 GLU1098 TYR1099 TYR1100 ILE1101 ILE1102 ASN1103 ASP1104 ASN1105 TYR1106 ILE1107 ASP1108 ARG1109 TYR1110 ILE1111 ALA1112 PRO1113 GLU1114 SER1115 ASN1116 VAL1117 LEU1118 VAL1119 LEU1120 VAL1121 GLN1122 TYR1123 PRO1124 ASP1125 ARG1126 SER1127 LYS1128 LEU1129 TYR1130 THR1131 GLY1132 ASN1133 PRO1134 ILE1135 THR1136 ILE1137 LYS1138 SER1139 VAL1140 SER1141 ASP1142 LYS1143 ASN1144 PRO1145 TYR1146 SER1147 ARG1148 ILE1149 LEU1150 ASN1151 GLY1152 ASP1153 ASN1154 ILE1155 ILE1156 LEU1157 HIS1158 MET1159 LEU1160 TYR1161 ASN1162 SER1163 ARG1164 LYS1165 TYR1166 MET1167 ILE1168 ILE1169 ARG1170 ASP1171 THR1172 ASP1173 THR1174 ILE1175 TYR1176 ALA1177 CYS1183 SER1184 GLN1185 ASN1186 CYS1187 VAL1188 TYR1189 ALA1190 LEU1191 LYS1192 LEU1193 GLN1194 SER1195 ASN1196 LEU1197 GLY1198 ASN1199 TYR1200 GLY1201 ILE1202 GLY1203 ILE1204 PHE1205 SER1206 ILE1207 LYS1208 ASN1209 ILE1210 VAL1211 SER1212 LYS1213 ASN1214 LYS1215 TYR1216 CYS1217 SER1218 GLN1219 ILE1220 PHE1221 SER1222 SER1223 PHE1224 ARG1225 GLU1226 ASN1227 THR1228 MET1229 LEU1230 LEU1231 ALA1232 ASP1233 ILE1234 TYR1235 LYS1236 LYS1243 ASN1244 ALA1245 TYR1246 THR1247 PRO1248 VAL1249 ALA1250 VAL1251 THR1252 ASN1253 TYR1254 GLU1255 THR1256 LYS1257 LEU1258 LEU1259 SER1260 THR1261 SER1262 SER1263 PHE1264 TRP1265 LYS1266 PHE1267 ILE1268 SER1269 ARG1270 ASP1271 PRO1272 GLY1273 TRP1274 VAL1275 GLU1276
Unit 3 ASN862 SER863 ILE864 ASN865 ASP866 SER867 LYS868 ILE869 LEU870 SER871 LEU872 GLN873 ASN874 LYS875 LYS876 ASN877 ALA878 LEU879 VAL880 ASP881 THR882 SER883 GLY884 TYR885 ASN886 ALA887 GLU888 VAL889 ARG890 VAL891 GLY892 ASP893 ASN894 VAL895 GLN896 LEU897 ASN898 THR899 ILE900 TYR901 THR902 ASN903 ASP904 PHE905 LYS906 LEU907 SER908 SER909 SER910 GLY911 ASP912 LYS913 ILE914 ILE915 VAL916 ASN917 LEU918 ASN919 ASN920 ASN921 GLU929 ASN930 SER931 SER932 VAL933 SER934 PHE935 TRP936 ILE937 LYS938 ILE939 SER940 LYS941 ASP942 LEU943 THR944 ASN945 SER946 HIS947 ASN948 GLU949 TYR950 THR951 ILE952 ILE953 ASN954 SER955 ILE956 GLU957 GLN958 ASN959 SER960 GLY961 TRP962 LYS963 LEU964 CYS965 ILE966 ARG967 ASN968 GLY969 ASN970 ILE971 GLU972 TRP973 ILE974 LEU975 GLN976 ASP977 VAL978 ASN979 ARG980 LYS981 TYR982 LYS983 SER984 LEU985 ILE986 PHE987 ASP988 TYR989 SER990 GLU991 SER992 LEU993 SER994 HIS995 THR996 GLY997 TYR998 THR999 ASN1000 LYS1001 TRP1002 PHE1003 PHE1004 VAL1005 THR1006 ILE1007 THR1008 ASN1009 ASN1010 ILE1011 MET1012 GLY1013 TYR1014 MET1015 LYS1016 LEU1017 TYR1018 ILE1019 ASN1020 GLY1021 GLU1022 LEU1023 LYS1024 GLN1025 SER1026 GLN1027 LYS1028 ILE1029 GLU1030 ASP1031 LEU1032 ASP1033 GLU1034 VAL1035 LYS1036 LEU1037 ASP1038 LYS1039 THR1040 ILE1041 VAL1042 PHE1043 GLY1044 ILE1045 ASP1046 GLU1047 ASN1048 ILE1049 ASP1050 GLU1051 ASN1052 GLN1053 MET1054 LEU1055 TRP1056 ILE1057 ARG1058 ASP1059 PHE1060 ASN1061 ILE1062 PHE1063 SER1064 LYS1065 GLU1066 LEU1067 SER1068 ASN1069 GLU1070 ASP1071 ILE1072 ASN1073 ILE1074 VAL1075 TYR1076 GLU1077 GLY1078 GLN1079 ILE1080 LEU1081 ARG1082 ASN1083 VAL1084 ILE1085 LYS1086 ASP1087 TYR1088 TRP1089 GLY1090 ASN1091 PRO1092 LEU1093 LYS1094 PHE1095 ASP1096 THR1097 GLU1098 TYR1099 TYR1100 ILE1101 ILE1102 ASN1103 ASP1104 ASN1105 TYR1106 ILE1107 ASP1108 ARG1109 TYR1110 ILE1111 ALA1112 PRO1113 GLU1114 SER1115 ASN1116 VAL1117 LEU1118 VAL1119 LEU1120 VAL1121 GLN1122 TYR1123 PRO1124 ASP1125 ARG1126 SER1127 LYS1128 LEU1129 TYR1130 THR1131 GLY1132 ASN1133 PRO1134 ILE1135 THR1136 ILE1137 LYS1138 SER1139 VAL1140 SER1141 ASP1142 LYS1143 ASN1144 PRO1145 TYR1146 SER1147 ARG1148 ILE1149 LEU1150 ASN1151 GLY1152 ASP1153 ASN1154 ILE1155 ILE1156 LEU1157 HIS1158 MET1159 LEU1160 TYR1161 ASN1162 SER1163 ARG1164 LYS1165 TYR1166 MET1167 ILE1168 ILE1169 ARG1170 ASP1171 THR1172 ASP1173 THR1174 ILE1175 TYR1176 ALA1177 CYS1183 SER1184 GLN1185 ASN1186 CYS1187 VAL1188 TYR1189 ALA1190 LEU1191 LYS1192 LEU1193 GLN1194 SER1195 ASN1196 LEU1197 GLY1198 ASN1199 TYR1200 GLY1201 ILE1202 GLY1203 ILE1204 PHE1205 SER1206 ILE1207 LYS1208 ASN1209 ILE1210 VAL1211 SER1212 LYS1213 ASN1214 LYS1215 TYR1216 CYS1217 SER1218 GLN1219 ILE1220 PHE1221 SER1222 SER1223 PHE1224 ARG1225 GLU1226 ASN1227 THR1228 MET1229 LEU1230 LEU1231 ALA1232 ASP1233 ILE1234 TYR1235 LYS1236 PRO1237 ALA1238 ARG1239 PHE1240 SER1241 PHE1242 LYS1243 ASN1244 ALA1245 TYR1246 THR1247 PRO1248 VAL1249 ALA1250 VAL1251 THR1252 ASN1253 TYR1254 GLU1255 THR1256 LYS1257 LEU1258 LEU1259 SER1260 THR1261 SER1262 SER1263 PHE1264 TRP1265 LYS1266 PHE1267 ILE1268 SER1269 ARG1270 ASP1271 PRO1272 GLY1273 TRP1274 VAL1275 GLU1276
Unit 4 ASN862 SER863 ILE864 ASN865 ASP866 SER867 LYS868 ILE869 LEU870 SER871 LEU872 GLN873 ASN874 LYS875 LYS876 ASN877 ALA878 LEU879 VAL880 ASP881 THR882 SER883 GLY884 TYR885 ASN886 ALA887 GLU888 VAL889 ARG890 VAL891 GLY892 ASP893 ASN894 VAL895 GLN896 LEU897 ASN898 THR899 ILE900 TYR901 THR902 ASN903 ASP904 PHE905 LYS906 LEU907 SER908 SER909 SER910 GLY911 ASP912 LYS913 ILE914 ILE915 VAL916 ASN917 LEU918 ASN919 ASN920 ASN921 ILE922 GLU929 ASN930 SER931 SER932 VAL933 SER934 PHE935 TRP936 ILE937 LYS938 ILE939 SER940 LYS941 ASP942 LEU943 THR944 ASN945 SER946 HIS947 ASN948 GLU949 TYR950 THR951 ILE952 ILE953 ASN954 SER955 ILE956 GLU957 GLN958 ASN959 SER960 GLY961 TRP962 LYS963 LEU964 CYS965 ILE966 ARG967 ASN968 GLY969 ASN970 ILE971 GLU972 TRP973 ILE974 LEU975 GLN976 ASP977 VAL978 ASN979 ARG980 LYS981 TYR982 LYS983 SER984 LEU985 ILE986 PHE987 ASP988 TYR989 SER990 GLU991 SER992 LEU993 SER994 HIS995 THR996 GLY997 TYR998 THR999 ASN1000 LYS1001 TRP1002 PHE1003 PHE1004 VAL1005 THR1006 ILE1007 THR1008 ASN1009 ASN1010 ILE1011 MET1012 GLY1013 TYR1014 MET1015 LYS1016 LEU1017 TYR1018 ILE1019 ASN1020 GLY1021 GLU1022 LEU1023 LYS1024 GLN1025 SER1026 GLN1027 LYS1028 ILE1029 GLU1030 ASP1031 LEU1032 ASP1033 GLU1034 VAL1035 LYS1036 LEU1037 ASP1038 LYS1039 THR1040 ILE1041 VAL1042 PHE1043 GLY1044 ILE1045 ASP1046 GLU1047 ASN1048 ILE1049 ASP1050 GLU1051 ASN1052 GLN1053 MET1054 LEU1055 TRP1056 ILE1057 ARG1058 ASP1059 PHE1060 ASN1061 ILE1062 PHE1063 SER1064 LYS1065 GLU1066 LEU1067 SER1068 ASN1069 GLU1070 ASP1071 ILE1072 ASN1073 ILE1074 VAL1075 TYR1076 GLU1077 GLY1078 GLN1079 ILE1080 LEU1081 ARG1082 ASN1083 VAL1084 ILE1085 LYS1086 ASP1087 TYR1088 TRP1089 GLY1090 ASN1091 PRO1092 LEU1093 LYS1094 PHE1095 ASP1096 THR1097 GLU1098 TYR1099 TYR1100 ILE1101 ILE1102 ASN1103 ASP1104 ASN1105 TYR1106 ILE1107 ASP1108 ARG1109 TYR1110 ILE1111 ALA1112 PRO1113 GLU1114 SER1115 ASN1116 VAL1117 LEU1118 VAL1119 LEU1120 VAL1121 GLN1122 TYR1123 PRO1124 ASP1125 ARG1126 SER1127 LYS1128 LEU1129 TYR1130 THR1131 GLY1132 ASN1133 PRO1134 ILE1135 THR1136 ILE1137 LYS1138 SER1139 VAL1140 SER1141 ASP1142 LYS1143 ASN1144 PRO1145 TYR1146 SER1147 ARG1148 ILE1149 LEU1150 ASN1151 GLY1152 ASP1153 ASN1154 ILE1155 ILE1156 LEU1157 HIS1158 MET1159 LEU1160 TYR1161 ASN1162 SER1163 ARG1164 LYS1165 TYR1166 MET1167 ILE1168 ILE1169 ARG1170 ASP1171 THR1172 ASP1173 THR1174 ILE1175 TYR1176 ALA1177 CYS1183 SER1184 GLN1185 ASN1186 CYS1187 VAL1188 TYR1189 ALA1190 LEU1191 LYS1192 LEU1193 GLN1194 SER1195 ASN1196 LEU1197 GLY1198 ASN1199 TYR1200 GLY1201 ILE1202 GLY1203 ILE1204 PHE1205 SER1206 ILE1207 LYS1208 ASN1209 ILE1210 VAL1211 SER1212 LYS1213 ASN1214 LYS1215 TYR1216 CYS1217 SER1218 GLN1219 ILE1220 PHE1221 SER1222 SER1223 PHE1224 ARG1225 GLU1226 ASN1227 THR1228 MET1229 LEU1230 LEU1231 ALA1232 ASP1233 ILE1234 TYR1235 LYS1236 PRO1237 ALA1238 ARG1239 PHE1240 SER1241 PHE1242 LYS1243 ASN1244 ALA1245 TYR1246 THR1247 PRO1248 VAL1249 ALA1250 VAL1251 THR1252 ASN1253 TYR1254 GLU1255 THR1256 LYS1257 LEU1258 LEU1259 SER1260 THR1261 SER1262 SER1263 PHE1264 TRP1265 LYS1266 PHE1267 ILE1268 SER1269 ARG1270 ASP1271 PRO1272 GLY1273 TRP1274 VAL1275 GLU1276
Ligands
Unit 5 GOL1400
Unit 6 GOL1401
Unit 7 GOL1402
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany