3RKD - Sequence, Chains, Asymmetric and Biological Units

• Title: HEPATITIS E VIRUS E2S DOMAIN (GENOTYPE I) IN COMPLEX WITH A NEUTRALIZING ANTIBODY
• Keywords: HEPATITIS E VIRUS CAPSID PROTEIN, NEUTRALIZING ANTIBODY, VIR PROTEIN-IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3RKD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CAPSID PROTEIN	A	146	1096	0
2	Protein	CAPSID PROTEIN	B	145	1090	0
3	Protein	MONOCLONAL ANTIBODY, LIGHT CHAIN	L	213	1656	0
4	Protein	MONOCLONAL ANTIBODY, HEAVY CHAIN	H	218	1637	0
5	Protein	MONOCLONAL ANTIBODY, LIGHT CHAIN	C	213	1656	0
6	Protein	MONOCLONAL ANTIBODY, HEAVY CHAIN	D	218	1637	0
7	Water			761	0	761
total				1914	8772	761

Proteins

Unit 1	SER 459 ARG 460 PRO 461 PHE 462 SER 463 VAL 464 LEU 465 ARG 466 ALA 467 ASN 468 ASP 469 VAL 470 LEU 471 TRP 472 LEU 473 SER 474 LEU 475 THR 476 ALA 477 ALA 478 GLU 479 TYR 480 ASP 481 GLN 482 SER 483 THR 484 TYR 485 GLY 486 SER 487 SER 488 THR 489 GLY 490 PRO 491 VAL 492 TYR 493 VAL 494 SER 495 ASP 496 SER 497 VAL 498 THR 499 LEU 500 VAL 501 ASN 502 VAL 503 ALA 504 THR 505 GLY 506 ALA 507 GLN 508 ALA 509 VAL 510 ALA 511 ARG 512 SER 513 LEU 514 ASP 515 TRP 516 THR 517 LYS 518 VAL 519 THR 520 LEU 521 ASP 522 GLY 523 ARG 524 PRO 525 LEU 526 SER 527 THR 528 ILE 529 GLN 530 GLN 531 HIS 532 SER 533 LYS 534 THR 535 PHE 536 PHE 537 VAL 538 LEU 539 PRO 540 LEU 541 ARG 542 GLY 543 LYS 544 LEU 545 SER 546 PHE 547 TRP 548 GLU 549 ALA 550 GLY 551 THR 552 THR 553 LYS 554 ALA 555 GLY 556 TYR 557 PRO 558 TYR 559 ASN 560 TYR 561 ASN 562 THR 563 THR 564 ALA 565 SER 566 ASP 567 GLN 568 LEU 569 LEU 570 VAL 571 GLU 572 ASN 573 ALA 574 ALA 575 GLY 576 HIS 577 ARG 578 VAL 579 ALA 580 ILE 581 SER 582 THR 583 TYR 584 THR 585 THR 586 SER 587 LEU 588 GLY 589 ALA 590 GLY 591 PRO 592 VAL 593 SER 594 ILE 595 SER 596 ALA 597 VAL 598 ALA 599 VAL 600 LEU 601 ALA 602 PRO 603 PRO 604
Unit 2	ARG 460 PRO 461 PHE 462 SER 463 VAL 464 LEU 465 ARG 466 ALA 467 ASN 468 ASP 469 VAL 470 LEU 471 TRP 472 LEU 473 SER 474 LEU 475 THR 476 ALA 477 ALA 478 GLU 479 TYR 480 ASP 481 GLN 482 SER 483 THR 484 TYR 485 GLY 486 SER 487 SER 488 THR 489 GLY 490 PRO 491 VAL 492 TYR 493 VAL 494 SER 495 ASP 496 SER 497 VAL 498 THR 499 LEU 500 VAL 501 ASN 502 VAL 503 ALA 504 THR 505 GLY 506 ALA 507 GLN 508 ALA 509 VAL 510 ALA 511 ARG 512 SER 513 LEU 514 ASP 515 TRP 516 THR 517 LYS 518 VAL 519 THR 520 LEU 521 ASP 522 GLY 523 ARG 524 PRO 525 LEU 526 SER 527 THR 528 ILE 529 GLN 530 GLN 531 HIS 532 SER 533 LYS 534 THR 535 PHE 536 PHE 537 VAL 538 LEU 539 PRO 540 LEU 541 ARG 542 GLY 543 LYS 544 LEU 545 SER 546 PHE 547 TRP 548 GLU 549 ALA 550 GLY 551 THR 552 THR 553 LYS 554 ALA 555 GLY 556 TYR 557 PRO 558 TYR 559 ASN 560 TYR 561 ASN 562 THR 563 THR 564 ALA 565 SER 566 ASP 567 GLN 568 LEU 569 LEU 570 VAL 571 GLU 572 ASN 573 ALA 574 ALA 575 GLY 576 HIS 577 ARG 578 VAL 579 ALA 580 ILE 581 SER 582 THR 583 TYR 584 THR 585 THR 586 SER 587 LEU 588 GLY 589 ALA 590 GLY 591 PRO 592 VAL 593 SER 594 ILE 595 SER 596 ALA 597 VAL 598 ALA 599 VAL 600 LEU 601 ALA 602 PRO 603 PRO 604
Unit 3	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 SER 10 LEU 11 SER 12 VAL 13 SER 14 VAL 15 GLY 16 GLU 17 THR 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLU 27 ILE 28 ILE 29 TYR 30 SER 31 ASN 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 GLN 40 GLY 41 LYS 42 SER 43 PRO 44 GLN 45 LEU 46 LEU 47 VAL 48 TYR 49 SER 50 ALA 51 THR 52 ASN 53 LEU 54 ALA 55 GLU 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLN 70 TYR 71 SER 72 LEU 73 LYS 74 ILE 75 ASN 76 SER 77 LEU 78 GLN 79 SER 80 GLU 81 ASP 82 PHE 83 GLY 84 SER 85 TYR 86 TYR 87 CYS 88 GLN 89 HIS 90 PHE 91 TRP 92 GLY 93 ASN 94 PRO 95 TRP 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 ILE 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212 GLU 213
Unit 4	GLN 1 VAL 2 THR 3 LEU 4 LYS 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 ILE 11 LEU 12 GLN 13 PRO 14 SER 15 GLN 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 SER 23 PHE 24 SER 25 GLY 26 PHE 27 SER 28 LEU 29 SER 30 THR 31 SER 32 GLY 33 MET 34 GLY 35 VAL 36 GLY 37 TRP 38 ILE 39 ARG 40 GLN 41 PRO 42 SER 43 GLY 44 LYS 45 GLY 46 LEU 47 GLU 48 TRP 49 LEU 50 ALA 51 HIS 52 ILE 53 TRP 54 TRP 55 ASP 56 ASP 57 VAL 58 LYS 59 ARG 60 TYR 61 SER 62 PRO 63 ALA 64 LEU 65 LYS 66 SER 67 ARG 68 LEU 69 THR 70 ILE 71 SER 72 LYS 73 ASP 74 THR 75 SER 76 SER 77 SER 78 GLN 79 LEU 80 PHE 81 LEU 82 LYS 83 ILE 84 ALA 85 SER 86 VAL 87 ASP 88 THR 89 ALA 90 ASP 91 THR 92 ALA 93 THR 94 TYR 95 TYR 96 CYS 97 ALA 98 ARG 99 ILE 100 LYS 101 SER 102 VAL 103 ILE 104 THR 105 THR 106 GLY 107 ASP 108 TYR 109 ALA 110 LEU 111 ASP 112 TYR 113 TRP 114 GLY 115 GLN 116 GLY 117 THR 118 SER 119 VAL 120 ALA 121 VAL 122 SER 123 SER 124 ALA 125 LYS 126 THR 127 THR 128 PRO 129 PRO 130 SER 131 VAL 132 TYR 133 PRO 134 LEU 135 ALA 136 PRO 137 GLY 138 SER 145 MET 146 VAL 147 THR 148 LEU 149 GLY 150 CYS 151 LEU 152 VAL 153 LYS 154 GLY 155 TYR 156 PHE 157 PRO 158 GLU 159 PRO 160 VAL 161 THR 162 VAL 163 THR 164 TRP 165 ASN 166 SER 167 GLY 168 SER 169 LEU 170 SER 171 SER 172 GLY 173 VAL 174 HIS 175 THR 176 PHE 177 PRO 178 ALA 179 VAL 180 LEU 181 GLN 182 SER 183 ASP 184 LEU 185 TYR 186 THR 187 LEU 188 SER 189 SER 190 SER 191 VAL 192 THR 193 VAL 194 PRO 195 SER 196 SER 197 THR 198 TRP 199 PRO 200 SER 201 GLU 202 THR 203 VAL 204 THR 205 CYS 206 ASN 207 VAL 208 ALA 209 HIS 210 PRO 211 ALA 212 SER 213 SER 214 THR 215 LYS 216 VAL 217 ASP 218 LYS 219 LYS 220 ILE 221 VAL 222 PRO 223 ARG 224
Unit 5	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 SER 10 LEU 11 SER 12 VAL 13 SER 14 VAL 15 GLY 16 GLU 17 THR 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLU 27 ILE 28 ILE 29 TYR 30 SER 31 ASN 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 GLN 40 GLY 41 LYS 42 SER 43 PRO 44 GLN 45 LEU 46 LEU 47 VAL 48 TYR 49 SER 50 ALA 51 THR 52 ASN 53 LEU 54 ALA 55 GLU 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLN 70 TYR 71 SER 72 LEU 73 LYS 74 ILE 75 ASN 76 SER 77 LEU 78 GLN 79 SER 80 GLU 81 ASP 82 PHE 83 GLY 84 SER 85 TYR 86 TYR 87 CYS 88 GLN 89 HIS 90 PHE 91 TRP 92 GLY 93 ASN 94 PRO 95 TRP 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 ILE 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212 GLU 213
Unit 6	GLN 1 VAL 2 THR 3 LEU 4 LYS 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 ILE 11 LEU 12 GLN 13 PRO 14 SER 15 GLN 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 SER 23 PHE 24 SER 25 GLY 26 PHE 27 SER 28 LEU 29 SER 30 THR 31 SER 32 GLY 33 MET 34 GLY 35 VAL 36 GLY 37 TRP 38 ILE 39 ARG 40 GLN 41 PRO 42 SER 43 GLY 44 LYS 45 GLY 46 LEU 47 GLU 48 TRP 49 LEU 50 ALA 51 HIS 52 ILE 53 TRP 54 TRP 55 ASP 56 ASP 57 VAL 58 LYS 59 ARG 60 TYR 61 SER 62 PRO 63 ALA 64 LEU 65 LYS 66 SER 67 ARG 68 LEU 69 THR 70 ILE 71 SER 72 LYS 73 ASP 74 THR 75 SER 76 SER 77 SER 78 GLN 79 LEU 80 PHE 81 LEU 82 LYS 83 ILE 84 ALA 85 SER 86 VAL 87 ASP 88 THR 89 ALA 90 ASP 91 THR 92 ALA 93 THR 94 TYR 95 TYR 96 CYS 97 ALA 98 ARG 99 ILE 100 LYS 101 SER 102 VAL 103 ILE 104 THR 105 THR 106 GLY 107 ASP 108 TYR 109 ALA 110 LEU 111 ASP 112 TYR 113 TRP 114 GLY 115 GLN 116 GLY 117 THR 118 SER 119 VAL 120 ALA 121 VAL 122 SER 123 SER 124 ALA 125 LYS 126 THR 127 THR 128 PRO 129 PRO 130 SER 131 VAL 132 TYR 133 PRO 134 LEU 135 ALA 136 PRO 137 GLY 138 SER 145 MET 146 VAL 147 THR 148 LEU 149 GLY 150 CYS 151 LEU 152 VAL 153 LYS 154 GLY 155 TYR 156 PHE 157 PRO 158 GLU 159 PRO 160 VAL 161 THR 162 VAL 163 THR 164 TRP 165 ASN 166 SER 167 GLY 168 SER 169 LEU 170 SER 171 SER 172 GLY 173 VAL 174 HIS 175 THR 176 PHE 177 PRO 178 ALA 179 VAL 180 LEU 181 GLN 182 SER 183 ASP 184 LEU 185 TYR 186 THR 187 LEU 188 SER 189 SER 190 SER 191 VAL 192 THR 193 VAL 194 PRO 195 SER 196 SER 197 THR 198 TRP 199 PRO 200 SER 201 GLU 202 THR 203 VAL 204 THR 205 CYS 206 ASN 207 VAL 208 ALA 209 HIS 210 PRO 211 ALA 212 SER 213 SER 214 THR 215 LYS 216 VAL 217 ASP 218 LYS 219 LYS 220 ILE 221 VAL 222 PRO 223 ARG 224