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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF DIPEPTIDE EPIMERASE FROM METHYLOCOCCUS COMPLEXED WITH MG AND DIPEPTIDE L-ARG-D-LYS
Keywords TIM BARREL, CHLOROMUCONATE CYCLOISOMERASE, ISOMERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3RIT     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DIPEPTIDE EPIMERASE  A 354 2720 0
2  Protein   DIPEPTIDE EPIMERASE  B 354 2720 0
3  Protein   DIPEPTIDE EPIMERASE  C 354 2720 0
4  Protein   DIPEPTIDE EPIMERASE  D 354 2720 0
5  Protein   DIPEPTIDE EPIMERASE  E 354 2720 0
6  Protein   DIPEPTIDE EPIMERASE  A 10 0 68
7  Protein   DIPEPTIDE EPIMERASE  B 7 0 42
8  Protein   DIPEPTIDE EPIMERASE  C 8 0 58
9  Protein   DIPEPTIDE EPIMERASE  D 10 0 68
10  Protein   DIPEPTIDE EPIMERASE  E 9 0 63
11 Water     555 0 555
total       2369 13600 854
Proteins
Unit 1 MET1 LYS2 ILE3 ALA4 ASP5 ILE6 GLN7 VAL8 ARG9 THR10 GLU11 HIS12 PHE13 PRO14 LEU15 THR16 ARG17 PRO18 TYR19 ARG20 ILE21 ALA22 PHE23 ARG24 SER25 ILE26 GLU27 GLU28 ILE29 ASP30 ASN31 LEU32 ILE33 VAL34 GLU35 ILE36 ARG37 THR38 ALA39 ASP40 GLY41 LEU42 LEU43 GLY44 LEU45 GLY46 ALA47 ALA48 SER49 PRO50 GLU51 ARG52 HIS53 VAL54 THR55 GLY56 GLU57 THR58 LEU59 GLU60 ALA61 CYS62 HIS63 ALA64 ALA65 LEU66 ASP67 HIS68 ASP69 ARG70 LEU71 GLY72 TRP73 LEU74 MET75 GLY76 ARG77 ASP78 ILE79 ARG80 THR81 LEU82 PRO83 ARG84 LEU85 CYS86 ARG87 GLU88 LEU89 ALA90 GLU91 ARG92 LEU93 PRO94 ALA95 ALA96 PRO97 ALA98 ALA99 ARG100 ALA101 ALA102 LEU103 ASP104 MET105 ALA106 LEU107 HIS108 ASP109 LEU110 VAL111 ALA112 GLN113 CYS114 LEU115 GLY116 LEU117 PRO118 LEU119 VAL120 GLU121 ILE122 LEU123 GLY124 ARG125 ALA126 HIS127 ASP128 SER129 LEU130 PRO131 THR132 SER133 VAL134 THR135 ILE136 GLY137 ILE138 LYS139 PRO140 VAL141 GLU142 GLU143 THR144 LEU145 ALA146 GLU147 ALA148 ARG149 GLU150 HIS151 LEU152 ALA153 LEU154 GLY155 PHE156 ARG157 VAL158 LEU159 LYS160 VAL161 LYS162 LEU163 CYS164 GLY165 ASP166 GLU167 GLU168 GLN169 ASP170 PHE171 GLU172 ARG173 LEU174 ARG175 ARG176 LEU177 HIS178 GLU179 THR180 LEU181 ALA182 GLY183 ARG184 ALA185 VAL186 VAL187 ARG188 VAL189 ASP190 PRO191 ASN192 GLN193 SER194 TYR195 ASP196 ARG197 ASP198 GLY199 LEU200 LEU201 ARG202 LEU203 ASP204 ARG205 LEU206 VAL207 GLN208 GLU209 LEU210 GLY211 ILE212 GLU213 PHE214 ILE215 GLU216 GLN217 PRO218 PHE219 PRO220 ALA221 GLY222 ARG223 THR224 ASP225 TRP226 LEU227 ARG228 ALA229 LEU230 PRO231 LYS232 ALA233 ILE234 ARG235 ARG236 ARG237 ILE238 ALA239 ALA240 ASP241 GLU242 SER243 LEU244 LEU245 GLY246 PRO247 ALA248 ASP249 ALA250 PHE251 ALA252 LEU253 ALA254 ALA255 PRO256 PRO257 ALA258 ALA259 CYS260 GLY261 ILE262 PHE263 ASN264 ILE265 LYS266 LEU267 MET268 LYS269 CYS270 GLY271 GLY272 LEU273 ALA274 PRO275 ALA276 ARG277 ARG278 ILE279 ALA280 THR281 ILE282 ALA283 GLU284 THR285 ALA286 GLY287 ILE288 ASP289 LEU290 MET291 TRP292 GLY293 CYS294 MET295 ASP296 GLU297 SER298 ARG299 ILE300 SER301 ILE302 ALA303 ALA304 ALA305 LEU306 HIS307 ALA308 ALA309 LEU310 ALA311 CYS312 PRO313 ALA314 THR315 ARG316 TYR317 LEU318 ASP319 LEU320 ASP321 GLY322 SER323 PHE324 ASP325 LEU326 ALA327 ARG328 ASP329 VAL330 ALA331 GLU332 GLY333 GLY334 PHE335 ILE336 LEU337 GLU338 ASP339 GLY340 ARG341 LEU342 ARG343 VAL344 THR345 GLU346 ARG347 PRO348 GLY349 LEU350 GLY351 LEU352 VAL353 TYR354
Unit 2 MET1 LYS2 ILE3 ALA4 ASP5 ILE6 GLN7 VAL8 ARG9 THR10 GLU11 HIS12 PHE13 PRO14 LEU15 THR16 ARG17 PRO18 TYR19 ARG20 ILE21 ALA22 PHE23 ARG24 SER25 ILE26 GLU27 GLU28 ILE29 ASP30 ASN31 LEU32 ILE33 VAL34 GLU35 ILE36 ARG37 THR38 ALA39 ASP40 GLY41 LEU42 LEU43 GLY44 LEU45 GLY46 ALA47 ALA48 SER49 PRO50 GLU51 ARG52 HIS53 VAL54 THR55 GLY56 GLU57 THR58 LEU59 GLU60 ALA61 CYS62 HIS63 ALA64 ALA65 LEU66 ASP67 HIS68 ASP69 ARG70 LEU71 GLY72 TRP73 LEU74 MET75 GLY76 ARG77 ASP78 ILE79 ARG80 THR81 LEU82 PRO83 ARG84 LEU85 CYS86 ARG87 GLU88 LEU89 ALA90 GLU91 ARG92 LEU93 PRO94 ALA95 ALA96 PRO97 ALA98 ALA99 ARG100 ALA101 ALA102 LEU103 ASP104 MET105 ALA106 LEU107 HIS108 ASP109 LEU110 VAL111 ALA112 GLN113 CYS114 LEU115 GLY116 LEU117 PRO118 LEU119 VAL120 GLU121 ILE122 LEU123 GLY124 ARG125 ALA126 HIS127 ASP128 SER129 LEU130 PRO131 THR132 SER133 VAL134 THR135 ILE136 GLY137 ILE138 LYS139 PRO140 VAL141 GLU142 GLU143 THR144 LEU145 ALA146 GLU147 ALA148 ARG149 GLU150 HIS151 LEU152 ALA153 LEU154 GLY155 PHE156 ARG157 VAL158 LEU159 LYS160 VAL161 LYS162 LEU163 CYS164 GLY165 ASP166 GLU167 GLU168 GLN169 ASP170 PHE171 GLU172 ARG173 LEU174 ARG175 ARG176 LEU177 HIS178 GLU179 THR180 LEU181 ALA182 GLY183 ARG184 ALA185 VAL186 VAL187 ARG188 VAL189 ASP190 PRO191 ASN192 GLN193 SER194 TYR195 ASP196 ARG197 ASP198 GLY199 LEU200 LEU201 ARG202 LEU203 ASP204 ARG205 LEU206 VAL207 GLN208 GLU209 LEU210 GLY211 ILE212 GLU213 PHE214 ILE215 GLU216 GLN217 PRO218 PHE219 PRO220 ALA221 GLY222 ARG223 THR224 ASP225 TRP226 LEU227 ARG228 ALA229 LEU230 PRO231 LYS232 ALA233 ILE234 ARG235 ARG236 ARG237 ILE238 ALA239 ALA240 ASP241 GLU242 SER243 LEU244 LEU245 GLY246 PRO247 ALA248 ASP249 ALA250 PHE251 ALA252 LEU253 ALA254 ALA255 PRO256 PRO257 ALA258 ALA259 CYS260 GLY261 ILE262 PHE263 ASN264 ILE265 LYS266 LEU267 MET268 LYS269 CYS270 GLY271 GLY272 LEU273 ALA274 PRO275 ALA276 ARG277 ARG278 ILE279 ALA280 THR281 ILE282 ALA283 GLU284 THR285 ALA286 GLY287 ILE288 ASP289 LEU290 MET291 TRP292 GLY293 CYS294 MET295 ASP296 GLU297 SER298 ARG299 ILE300 SER301 ILE302 ALA303 ALA304 ALA305 LEU306 HIS307 ALA308 ALA309 LEU310 ALA311 CYS312 PRO313 ALA314 THR315 ARG316 TYR317 LEU318 ASP319 LEU320 ASP321 GLY322 SER323 PHE324 ASP325 LEU326 ALA327 ARG328 ASP329 VAL330 ALA331 GLU332 GLY333 GLY334 PHE335 ILE336 LEU337 GLU338 ASP339 GLY340 ARG341 LEU342 ARG343 VAL344 THR345 GLU346 ARG347 PRO348 GLY349 LEU350 GLY351 LEU352 VAL353 TYR354
Unit 3 MET1 LYS2 ILE3 ALA4 ASP5 ILE6 GLN7 VAL8 ARG9 THR10 GLU11 HIS12 PHE13 PRO14 LEU15 THR16 ARG17 PRO18 TYR19 ARG20 ILE21 ALA22 PHE23 ARG24 SER25 ILE26 GLU27 GLU28 ILE29 ASP30 ASN31 LEU32 ILE33 VAL34 GLU35 ILE36 ARG37 THR38 ALA39 ASP40 GLY41 LEU42 LEU43 GLY44 LEU45 GLY46 ALA47 ALA48 SER49 PRO50 GLU51 ARG52 HIS53 VAL54 THR55 GLY56 GLU57 THR58 LEU59 GLU60 ALA61 CYS62 HIS63 ALA64 ALA65 LEU66 ASP67 HIS68 ASP69 ARG70 LEU71 GLY72 TRP73 LEU74 MET75 GLY76 ARG77 ASP78 ILE79 ARG80 THR81 LEU82 PRO83 ARG84 LEU85 CYS86 ARG87 GLU88 LEU89 ALA90 GLU91 ARG92 LEU93 PRO94 ALA95 ALA96 PRO97 ALA98 ALA99 ARG100 ALA101 ALA102 LEU103 ASP104 MET105 ALA106 LEU107 HIS108 ASP109 LEU110 VAL111 ALA112 GLN113 CYS114 LEU115 GLY116 LEU117 PRO118 LEU119 VAL120 GLU121 ILE122 LEU123 GLY124 ARG125 ALA126 HIS127 ASP128 SER129 LEU130 PRO131 THR132 SER133 VAL134 THR135 ILE136 GLY137 ILE138 LYS139 PRO140 VAL141 GLU142 GLU143 THR144 LEU145 ALA146 GLU147 ALA148 ARG149 GLU150 HIS151 LEU152 ALA153 LEU154 GLY155 PHE156 ARG157 VAL158 LEU159 LYS160 VAL161 LYS162 LEU163 CYS164 GLY165 ASP166 GLU167 GLU168 GLN169 ASP170 PHE171 GLU172 ARG173 LEU174 ARG175 ARG176 LEU177 HIS178 GLU179 THR180 LEU181 ALA182 GLY183 ARG184 ALA185 VAL186 VAL187 ARG188 VAL189 ASP190 PRO191 ASN192 GLN193 SER194 TYR195 ASP196 ARG197 ASP198 GLY199 LEU200 LEU201 ARG202 LEU203 ASP204 ARG205 LEU206 VAL207 GLN208 GLU209 LEU210 GLY211 ILE212 GLU213 PHE214 ILE215 GLU216 GLN217 PRO218 PHE219 PRO220 ALA221 GLY222 ARG223 THR224 ASP225 TRP226 LEU227 ARG228 ALA229 LEU230 PRO231 LYS232 ALA233 ILE234 ARG235 ARG236 ARG237 ILE238 ALA239 ALA240 ASP241 GLU242 SER243 LEU244 LEU245 GLY246 PRO247 ALA248 ASP249 ALA250 PHE251 ALA252 LEU253 ALA254 ALA255 PRO256 PRO257 ALA258 ALA259 CYS260 GLY261 ILE262 PHE263 ASN264 ILE265 LYS266 LEU267 MET268 LYS269 CYS270 GLY271 GLY272 LEU273 ALA274 PRO275 ALA276 ARG277 ARG278 ILE279 ALA280 THR281 ILE282 ALA283 GLU284 THR285 ALA286 GLY287 ILE288 ASP289 LEU290 MET291 TRP292 GLY293 CYS294 MET295 ASP296 GLU297 SER298 ARG299 ILE300 SER301 ILE302 ALA303 ALA304 ALA305 LEU306 HIS307 ALA308 ALA309 LEU310 ALA311 CYS312 PRO313 ALA314 THR315 ARG316 TYR317 LEU318 ASP319 LEU320 ASP321 GLY322 SER323 PHE324 ASP325 LEU326 ALA327 ARG328 ASP329 VAL330 ALA331 GLU332 GLY333 GLY334 PHE335 ILE336 LEU337 GLU338 ASP339 GLY340 ARG341 LEU342 ARG343 VAL344 THR345 GLU346 ARG347 PRO348 GLY349 LEU350 GLY351 LEU352 VAL353 TYR354
Unit 4 MET1 LYS2 ILE3 ALA4 ASP5 ILE6 GLN7 VAL8 ARG9 THR10 GLU11 HIS12 PHE13 PRO14 LEU15 THR16 ARG17 PRO18 TYR19 ARG20 ILE21 ALA22 PHE23 ARG24 SER25 ILE26 GLU27 GLU28 ILE29 ASP30 ASN31 LEU32 ILE33 VAL34 GLU35 ILE36 ARG37 THR38 ALA39 ASP40 GLY41 LEU42 LEU43 GLY44 LEU45 GLY46 ALA47 ALA48 SER49 PRO50 GLU51 ARG52 HIS53 VAL54 THR55 GLY56 GLU57 THR58 LEU59 GLU60 ALA61 CYS62 HIS63 ALA64 ALA65 LEU66 ASP67 HIS68 ASP69 ARG70 LEU71 GLY72 TRP73 LEU74 MET75 GLY76 ARG77 ASP78 ILE79 ARG80 THR81 LEU82 PRO83 ARG84 LEU85 CYS86 ARG87 GLU88 LEU89 ALA90 GLU91 ARG92 LEU93 PRO94 ALA95 ALA96 PRO97 ALA98 ALA99 ARG100 ALA101 ALA102 LEU103 ASP104 MET105 ALA106 LEU107 HIS108 ASP109 LEU110 VAL111 ALA112 GLN113 CYS114 LEU115 GLY116 LEU117 PRO118 LEU119 VAL120 GLU121 ILE122 LEU123 GLY124 ARG125 ALA126 HIS127 ASP128 SER129 LEU130 PRO131 THR132 SER133 VAL134 THR135 ILE136 GLY137 ILE138 LYS139 PRO140 VAL141 GLU142 GLU143 THR144 LEU145 ALA146 GLU147 ALA148 ARG149 GLU150 HIS151 LEU152 ALA153 LEU154 GLY155 PHE156 ARG157 VAL158 LEU159 LYS160 VAL161 LYS162 LEU163 CYS164 GLY165 ASP166 GLU167 GLU168 GLN169 ASP170 PHE171 GLU172 ARG173 LEU174 ARG175 ARG176 LEU177 HIS178 GLU179 THR180 LEU181 ALA182 GLY183 ARG184 ALA185 VAL186 VAL187 ARG188 VAL189 ASP190 PRO191 ASN192 GLN193 SER194 TYR195 ASP196 ARG197 ASP198 GLY199 LEU200 LEU201 ARG202 LEU203 ASP204 ARG205 LEU206 VAL207 GLN208 GLU209 LEU210 GLY211 ILE212 GLU213 PHE214 ILE215 GLU216 GLN217 PRO218 PHE219 PRO220 ALA221 GLY222 ARG223 THR224 ASP225 TRP226 LEU227 ARG228 ALA229 LEU230 PRO231 LYS232 ALA233 ILE234 ARG235 ARG236 ARG237 ILE238 ALA239 ALA240 ASP241 GLU242 SER243 LEU244 LEU245 GLY246 PRO247 ALA248 ASP249 ALA250 PHE251 ALA252 LEU253 ALA254 ALA255 PRO256 PRO257 ALA258 ALA259 CYS260 GLY261 ILE262 PHE263 ASN264 ILE265 LYS266 LEU267 MET268 LYS269 CYS270 GLY271 GLY272 LEU273 ALA274 PRO275 ALA276 ARG277 ARG278 ILE279 ALA280 THR281 ILE282 ALA283 GLU284 THR285 ALA286 GLY287 ILE288 ASP289 LEU290 MET291 TRP292 GLY293 CYS294 MET295 ASP296 GLU297 SER298 ARG299 ILE300 SER301 ILE302 ALA303 ALA304 ALA305 LEU306 HIS307 ALA308 ALA309 LEU310 ALA311 CYS312 PRO313 ALA314 THR315 ARG316 TYR317 LEU318 ASP319 LEU320 ASP321 GLY322 SER323 PHE324 ASP325 LEU326 ALA327 ARG328 ASP329 VAL330 ALA331 GLU332 GLY333 GLY334 PHE335 ILE336 LEU337 GLU338 ASP339 GLY340 ARG341 LEU342 ARG343 VAL344 THR345 GLU346 ARG347 PRO348 GLY349 LEU350 GLY351 LEU352 VAL353 TYR354
Unit 5 MET1 LYS2 ILE3 ALA4 ASP5 ILE6 GLN7 VAL8 ARG9 THR10 GLU11 HIS12 PHE13 PRO14 LEU15 THR16 ARG17 PRO18 TYR19 ARG20 ILE21 ALA22 PHE23 ARG24 SER25 ILE26 GLU27 GLU28 ILE29 ASP30 ASN31 LEU32 ILE33 VAL34 GLU35 ILE36 ARG37 THR38 ALA39 ASP40 GLY41 LEU42 LEU43 GLY44 LEU45 GLY46 ALA47 ALA48 SER49 PRO50 GLU51 ARG52 HIS53 VAL54 THR55 GLY56 GLU57 THR58 LEU59 GLU60 ALA61 CYS62 HIS63 ALA64 ALA65 LEU66 ASP67 HIS68 ASP69 ARG70 LEU71 GLY72 TRP73 LEU74 MET75 GLY76 ARG77 ASP78 ILE79 ARG80 THR81 LEU82 PRO83 ARG84 LEU85 CYS86 ARG87 GLU88 LEU89 ALA90 GLU91 ARG92 LEU93 PRO94 ALA95 ALA96 PRO97 ALA98 ALA99 ARG100 ALA101 ALA102 LEU103 ASP104 MET105 ALA106 LEU107 HIS108 ASP109 LEU110 VAL111 ALA112 GLN113 CYS114 LEU115 GLY116 LEU117 PRO118 LEU119 VAL120 GLU121 ILE122 LEU123 GLY124 ARG125 ALA126 HIS127 ASP128 SER129 LEU130 PRO131 THR132 SER133 VAL134 THR135 ILE136 GLY137 ILE138 LYS139 PRO140 VAL141 GLU142 GLU143 THR144 LEU145 ALA146 GLU147 ALA148 ARG149 GLU150 HIS151 LEU152 ALA153 LEU154 GLY155 PHE156 ARG157 VAL158 LEU159 LYS160 VAL161 LYS162 LEU163 CYS164 GLY165 ASP166 GLU167 GLU168 GLN169 ASP170 PHE171 GLU172 ARG173 LEU174 ARG175 ARG176 LEU177 HIS178 GLU179 THR180 LEU181 ALA182 GLY183 ARG184 ALA185 VAL186 VAL187 ARG188 VAL189 ASP190 PRO191 ASN192 GLN193 SER194 TYR195 ASP196 ARG197 ASP198 GLY199 LEU200 LEU201 ARG202 LEU203 ASP204 ARG205 LEU206 VAL207 GLN208 GLU209 LEU210 GLY211 ILE212 GLU213 PHE214 ILE215 GLU216 GLN217 PRO218 PHE219 PRO220 ALA221 GLY222 ARG223 THR224 ASP225 TRP226 LEU227 ARG228 ALA229 LEU230 PRO231 LYS232 ALA233 ILE234 ARG235 ARG236 ARG237 ILE238 ALA239 ALA240 ASP241 GLU242 SER243 LEU244 LEU245 GLY246 PRO247 ALA248 ASP249 ALA250 PHE251 ALA252 LEU253 ALA254 ALA255 PRO256 PRO257 ALA258 ALA259 CYS260 GLY261 ILE262 PHE263 ASN264 ILE265 LYS266 LEU267 MET268 LYS269 CYS270 GLY271 GLY272 LEU273 ALA274 PRO275 ALA276 ARG277 ARG278 ILE279 ALA280 THR281 ILE282 ALA283 GLU284 THR285 ALA286 GLY287 ILE288 ASP289 LEU290 MET291 TRP292 GLY293 CYS294 MET295 ASP296 GLU297 SER298 ARG299 ILE300 SER301 ILE302 ALA303 ALA304 ALA305 LEU306 HIS307 ALA308 ALA309 LEU310 ALA311 CYS312 PRO313 ALA314 THR315 ARG316 TYR317 LEU318 ASP319 LEU320 ASP321 GLY322 SER323 PHE324 ASP325 LEU326 ALA327 ARG328 ASP329 VAL330 ALA331 GLU332 GLY333 GLY334 PHE335 ILE336 LEU337 GLU338 ASP339 GLY340 ARG341 LEU342 ARG343 VAL344 THR345 GLU346 ARG347 PRO348 GLY349 LEU350 GLY351 LEU352 VAL353 TYR354
Unit 6 SO4357 SO4358 SO4359 SO4360 SO4361 SO4362 ARG363 DLY364 MG365 1PE366
Unit 7 SO4357 SO4358 SO4359 SO4360 ARG361 DLY362 MG363
Unit 8 SO4357 SO4358 SO4359 SO4360 ARG361 DLY362 MG363 1PE364
Unit 9 SO4357 SO4358 SO4359 SO4360 SO4361 SO4362 ARG363 DLY364 MG365 1PE366
Unit 10 SO4357 SO4358 SO4359 SO4360 SO4361 ARG362 DLY363 MG364 1PE365
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany