3RIJ - Sequence, Chains, Asymmetric and Biological Units

• Title: EPITOPE BACKBONE GRAFTING BY COMPUTATIONAL DESIGN FOR IMPROV PRESENTATION OF LINEAR EPITOPES ON SCAFFOLD PROTEINS
• Keywords: PROTEIN GRAFTING, FLEXIBLE BACKBONE DESIGN, EPITOPE-SCAFFOLD IMMUNOGEN DESIGN, DE NOVO PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3RIJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SC_2CX5	A	157	1149	0
2	Protein	SC_2CX5	B	156	1143	0
3	Protein	SC_2CX5	C	150	1095	0
4	Protein	SC_2CX5	D	157	1149	0
5	Ligand	SC_2CX5	C	1	0	6
6	Water			449	0	449
total				1070	4536	455

Proteins

Unit 1	SER 2 LEU 3 SER 4 PRO 5 SER 6 ALA 7 ARG 8 ARG 9 VAL 10 GLN 11 GLY 12 ALA 13 LEU 14 GLU 15 THR 16 ARG 17 GLY 18 PHE 19 GLY 20 HIS 21 LEU 22 LYS 23 VAL 24 VAL 25 GLU 26 LEU 27 PRO 28 ALA 29 SER 30 THR 31 ARG 32 THR 33 ALA 34 LYS 35 GLU 36 ALA 37 ALA 38 GLN 39 ALA 40 VAL 41 GLY 42 ALA 43 GLU 44 VAL 45 GLY 46 GLN 47 ILE 48 VAL 49 LYS 50 SER 51 LEU 52 VAL 53 TYR 54 GLY 55 GLY 56 GLU 57 LYS 58 GLY 59 ALA 60 TYR 61 LEU 62 PHE 63 LEU 64 VAL 65 SER 66 GLY 67 LYS 68 ASN 69 ARG 70 LEU 71 ASP 72 LEU 73 GLY 74 LYS 75 ALA 76 THR 77 ARG 78 LEU 79 VAL 80 GLY 81 GLY 82 PRO 83 LEU 84 LEU 85 GLU 86 ALA 87 ASP 88 LYS 89 TRP 90 ALA 91 VAL 92 ALA 93 ALA 94 LEU 95 THR 96 GLY 97 PHE 98 ASP 99 ALA 100 GLY 101 GLY 102 VAL 103 PRO 104 PRO 105 VAL 106 GLY 107 HIS 108 ASN 109 THR 110 PRO 111 LEU 112 PRO 113 ALA 114 TYR 115 LEU 116 ASP 117 GLU 118 ASP 119 LEU 120 LEU 121 GLY 122 TYR 123 PRO 124 GLU 125 VAL 126 TRP 127 ALA 128 ALA 129 GLY 130 GLY 131 THR 132 PRO 133 ARG 134 ALA 135 LEU 136 PHE 137 ARG 138 ALA 139 THR 140 PRO 141 LYS 142 GLU 143 LEU 144 LEU 145 ALA 146 LEU 147 THR 148 GLY 149 ALA 150 GLN 151 VAL 152 ALA 153 ASP 154 LEU 155 LYS 156 GLU 157 GLY 158
Unit 2	LEU 3 SER 4 PRO 5 SER 6 ALA 7 ARG 8 ARG 9 VAL 10 GLN 11 GLY 12 ALA 13 LEU 14 GLU 15 THR 16 ARG 17 GLY 18 PHE 19 GLY 20 HIS 21 LEU 22 LYS 23 VAL 24 VAL 25 GLU 26 LEU 27 PRO 28 ALA 29 SER 30 THR 31 ARG 32 THR 33 ALA 34 LYS 35 GLU 36 ALA 37 ALA 38 GLN 39 ALA 40 VAL 41 GLY 42 ALA 43 GLU 44 VAL 45 GLY 46 GLN 47 ILE 48 VAL 49 LYS 50 SER 51 LEU 52 VAL 53 TYR 54 GLY 55 GLY 56 GLU 57 LYS 58 GLY 59 ALA 60 TYR 61 LEU 62 PHE 63 LEU 64 VAL 65 SER 66 GLY 67 LYS 68 ASN 69 ARG 70 LEU 71 ASP 72 LEU 73 GLY 74 LYS 75 ALA 76 THR 77 ARG 78 LEU 79 VAL 80 GLY 81 GLY 82 PRO 83 LEU 84 LEU 85 GLU 86 ALA 87 ASP 88 LYS 89 TRP 90 ALA 91 VAL 92 ALA 93 ALA 94 LEU 95 THR 96 GLY 97 PHE 98 ASP 99 ALA 100 GLY 101 GLY 102 VAL 103 PRO 104 PRO 105 VAL 106 GLY 107 HIS 108 ASN 109 THR 110 PRO 111 LEU 112 PRO 113 ALA 114 TYR 115 LEU 116 ASP 117 GLU 118 ASP 119 LEU 120 LEU 121 GLY 122 TYR 123 PRO 124 GLU 125 VAL 126 TRP 127 ALA 128 ALA 129 GLY 130 GLY 131 THR 132 PRO 133 ARG 134 ALA 135 LEU 136 PHE 137 ARG 138 ALA 139 THR 140 PRO 141 LYS 142 GLU 143 LEU 144 LEU 145 ALA 146 LEU 147 THR 148 GLY 149 ALA 150 GLN 151 VAL 152 ALA 153 ASP 154 LEU 155 LYS 156 GLU 157 GLY 158
Unit 3	SER 2 LEU 3 SER 4 PRO 5 SER 6 ALA 7 ARG 8 ARG 9 VAL 10 GLN 11 GLY 12 ALA 13 LEU 14 GLU 15 THR 16 ARG 17 GLY 18 PHE 19 GLY 20 HIS 21 LEU 22 LYS 23 VAL 24 VAL 25 GLU 26 LEU 27 PRO 28 GLU 36 ALA 37 ALA 38 GLN 39 ALA 40 VAL 41 GLY 42 ALA 43 GLU 44 VAL 45 GLY 46 GLN 47 ILE 48 VAL 49 LYS 50 SER 51 LEU 52 VAL 53 TYR 54 GLY 55 GLY 56 GLU 57 LYS 58 GLY 59 ALA 60 TYR 61 LEU 62 PHE 63 LEU 64 VAL 65 SER 66 GLY 67 LYS 68 ASN 69 ARG 70 LEU 71 ASP 72 LEU 73 GLY 74 LYS 75 ALA 76 THR 77 ARG 78 LEU 79 VAL 80 GLY 81 GLY 82 PRO 83 LEU 84 LEU 85 GLU 86 ALA 87 ASP 88 LYS 89 TRP 90 ALA 91 VAL 92 ALA 93 ALA 94 LEU 95 THR 96 GLY 97 PHE 98 ASP 99 ALA 100 GLY 101 GLY 102 VAL 103 PRO 104 PRO 105 VAL 106 GLY 107 HIS 108 ASN 109 THR 110 PRO 111 LEU 112 PRO 113 ALA 114 TYR 115 LEU 116 ASP 117 GLU 118 ASP 119 LEU 120 LEU 121 GLY 122 TYR 123 PRO 124 GLU 125 VAL 126 TRP 127 ALA 128 ALA 129 GLY 130 GLY 131 THR 132 PRO 133 ARG 134 ALA 135 LEU 136 PHE 137 ARG 138 ALA 139 THR 140 PRO 141 LYS 142 GLU 143 LEU 144 LEU 145 ALA 146 LEU 147 THR 148 GLY 149 ALA 150 GLN 151 VAL 152 ALA 153 ASP 154 LEU 155 LYS 156 GLU 157 GLY 158
Unit 4	SER 2 LEU 3 SER 4 PRO 5 SER 6 ALA 7 ARG 8 ARG 9 VAL 10 GLN 11 GLY 12 ALA 13 LEU 14 GLU 15 THR 16 ARG 17 GLY 18 PHE 19 GLY 20 HIS 21 LEU 22 LYS 23 VAL 24 VAL 25 GLU 26 LEU 27 PRO 28 ALA 29 SER 30 THR 31 ARG 32 THR 33 ALA 34 LYS 35 GLU 36 ALA 37 ALA 38 GLN 39 ALA 40 VAL 41 GLY 42 ALA 43 GLU 44 VAL 45 GLY 46 GLN 47 ILE 48 VAL 49 LYS 50 SER 51 LEU 52 VAL 53 TYR 54 GLY 55 GLY 56 GLU 57 LYS 58 GLY 59 ALA 60 TYR 61 LEU 62 PHE 63 LEU 64 VAL 65 SER 66 GLY 67 LYS 68 ASN 69 ARG 70 LEU 71 ASP 72 LEU 73 GLY 74 LYS 75 ALA 76 THR 77 ARG 78 LEU 79 VAL 80 GLY 81 GLY 82 PRO 83 LEU 84 LEU 85 GLU 86 ALA 87 ASP 88 LYS 89 TRP 90 ALA 91 VAL 92 ALA 93 ALA 94 LEU 95 THR 96 GLY 97 PHE 98 ASP 99 ALA 100 GLY 101 GLY 102 VAL 103 PRO 104 PRO 105 VAL 106 GLY 107 HIS 108 ASN 109 THR 110 PRO 111 LEU 112 PRO 113 ALA 114 TYR 115 LEU 116 ASP 117 GLU 118 ASP 119 LEU 120 LEU 121 GLY 122 TYR 123 PRO 124 GLU 125 VAL 126 TRP 127 ALA 128 ALA 129 GLY 130 GLY 131 THR 132 PRO 133 ARG 134 ALA 135 LEU 136 PHE 137 ARG 138 ALA 139 THR 140 PRO 141 LYS 142 GLU 143 LEU 144 LEU 145 ALA 146 LEU 147 THR 148 GLY 149 ALA 150 GLN 151 VAL 152 ALA 153 ASP 154 LEU 155 LYS 156 GLU 157 GLY 158

Ligands

Unit 5

GOL 3731