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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL STUDIES OF AAV8 CAPSID TRANSITIONS ASSOCIATED WIT ENDOSOMAL TRAFFICKING
Keywords BETA BARREL, VIRAL CAPSID, VIRUS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3RA8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CAPSID PROTEIN  A 519 4136 0
2  RNA    A 1 0 23
3 Water     85 0 85
total       605 4136 108
Proteins
Unit 1 ASP220 GLY221 VAL222 GLY223 SER224 SER225 SER226 GLY227 ASN228 TRP229 HIS230 CYS231 ASP232 SER233 THR234 TRP235 LEU236 GLY237 ASP238 ARG239 VAL240 ILE241 THR242 THR243 SER244 THR245 ARG246 THR247 TRP248 ALA249 LEU250 PRO251 THR252 TYR253 ASN254 ASN255 HIS256 LEU257 TYR258 LYS259 GLN260 ILE261 SER262 ASN263 GLY264 THR265 SER266 GLY267 GLY268 ALA269 THR270 ASN271 ASP272 ASN273 THR274 TYR275 PHE276 GLY277 TYR278 SER279 THR280 PRO281 TRP282 GLY283 TYR284 PHE285 ASP286 PHE287 ASN288 ARG289 PHE290 HIS291 CYS292 HIS293 PHE294 SER295 PRO296 ARG297 ASP298 TRP299 GLN300 ARG301 LEU302 ILE303 ASN304 ASN305 ASN306 TRP307 GLY308 PHE309 ARG310 PRO311 LYS312 ARG313 LEU314 SER315 PHE316 LYS317 LEU318 PHE319 ASN320 ILE321 GLN322 VAL323 LYS324 GLU325 VAL326 THR327 GLN328 ASN329 GLU330 GLY331 THR332 LYS333 THR334 ILE335 ALA336 ASN337 ASN338 LEU339 THR340 SER341 THR342 ILE343 GLN344 VAL345 PHE346 THR347 ASP348 SER349 GLU350 TYR351 GLN352 LEU353 PRO354 TYR355 VAL356 LEU357 GLY358 SER359 ALA360 HIS361 GLN362 GLY363 CYS364 LEU365 PRO366 PRO367 PHE368 PRO369 ALA370 ASP371 VAL372 PHE373 MET374 ILE375 PRO376 GLN377 TYR378 GLY379 TYR380 LEU381 THR382 LEU383 ASN384 ASN385 GLY386 SER387 GLN388 ALA389 VAL390 GLY391 ARG392 SER393 SER394 PHE395 TYR396 CYS397 LEU398 GLU399 TYR400 PHE401 PRO402 SER403 GLN404 MET405 LEU406 ARG407 THR408 GLY409 ASN410 ASN411 PHE412 GLN413 PHE414 THR415 TYR416 THR417 PHE418 GLU419 ASP420 VAL421 PRO422 PHE423 HIS424 SER425 SER426 TYR427 ALA428 HIS429 SER430 GLN431 SER432 LEU433 ASP434 ARG435 LEU436 MET437 ASN438 PRO439 LEU440 ILE441 ASP442 GLN443 TYR444 LEU445 TYR446 TYR447 LEU448 SER449 ARG450 THR451 GLN452 THR453 THR454 GLY455 GLY456 THR457 ALA458 ASN459 THR460 GLN461 THR462 LEU463 GLY464 PHE465 SER466 GLN467 GLY468 GLY469 PRO470 ASN471 THR472 MET473 ALA474 ASN475 GLN476 ALA477 LYS478 ASN479 TRP480 LEU481 PRO482 GLY483 PRO484 CYS485 TYR486 ARG487 GLN488 GLN489 ARG490 VAL491 SER492 THR493 THR494 THR495 GLY496 GLN497 ASN498 ASN499 ASN500 SER501 ASN502 PHE503 ALA504 TRP505 THR506 ALA507 GLY508 THR509 LYS510 TYR511 HIS512 LEU513 ASN514 GLY515 ARG516 ASN517 SER518 LEU519 ALA520 ASN521 PRO522 GLY523 ILE524 ALA525 MET526 ALA527 THR528 HIS529 LYS530 ASP531 ASP532 GLU533 GLU534 ARG535 PHE536 PHE537 PRO538 SER539 ASN540 GLY541 ILE542 LEU543 ILE544 PHE545 GLY546 LYS547 GLN548 ASN549 ALA550 ALA551 ARG552 ASP553 ASN554 ALA555 ASP556 TYR557 SER558 ASP559 VAL560 MET561 LEU562 THR563 SER564 GLU565 GLU566 GLU567 ILE568 LYS569 THR570 THR571 ASN572 PRO573 VAL574 ALA575 THR576 GLU577 GLU578 TYR579 GLY580 ILE581 VAL582 ALA583 ASP584 ASN585 LEU586 GLN587 GLN588 GLN589 ASN590 THR591 ALA592 PRO593 GLN594 ILE595 GLY596 THR597 VAL598 ASN599 SER600 GLN601 GLY602 ALA603 LEU604 PRO605 GLY606 MET607 VAL608 TRP609 GLN610 ASN611 ARG612 ASP613 VAL614 TYR615 LEU616 GLN617 GLY618 PRO619 ILE620 TRP621 ALA622 LYS623 ILE624 PRO625 HIS626 THR627 ASP628 GLY629 ASN630 PHE631 HIS632 PRO633 SER634 PRO635 LEU636 MET637 GLY638 GLY639 PHE640 GLY641 LEU642 LYS643 HIS644 PRO645 PRO646 PRO647 GLN648 ILE649 LEU650 ILE651 LYS652 ASN653 THR654 PRO655 VAL656 PRO657 ALA658 ASP659 PRO660 PRO661 THR662 THR663 PHE664 ASN665 GLN666 SER667 LYS668 LEU669 ASN670 SER671 PHE672 ILE673 THR674 GLN675 TYR676 SER677 THR678 GLY679 GLN680 VAL681 SER682 VAL683 GLU684 ILE685 GLU686 TRP687 GLU688 LEU689 GLN690 LYS691 GLU692 ASN693 SER694 LYS695 ARG696 TRP697 ASN698 PRO699 GLU700 ILE701 GLN702 TYR703 THR704 SER705 ASN706 TYR707 TYR708 LYS709 SER710 THR711 SER712 VAL713 ASP714 PHE715 ALA716 VAL717 ASN718 THR719 GLU720 GLY721 VAL722 TYR723 SER724 GLU725 PRO726 ARG727 PRO728 ILE729 GLY730 THR731 ARG732 TYR733 LEU734 THR735 ARG736 ASN737 LEU738
Nucleic acids
Unit 2 A1
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany