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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ERA IN COMPLEX WITH MGGDPNP AND NUCLEOT 1542 OF 16S RIBOSOMAL RNA
Keywords GTPASE, KH DOMAIN, RIBOSOME, BIOGENESIS, GTP, 16S RIBOSOMAL HYDROLYSIS, HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3R9W     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GTPASE ERA  A 302 2395 0
2  RNA    B 34 724 0
3  Ligand   GTPASE ERA  A 8 0 65
4  Ligand   RNA301  B 2 0 5
5 Water     91 0 91
total       437 3119 161
Proteins
Unit 1 HIS0 MET1 LYS2 VAL3 GLY4 TYR5 VAL6 ALA7 ILE8 VAL9 GLY10 LYS11 PRO12 ASN13 VAL14 GLY15 LYS16 SER17 THR18 LEU19 LEU20 ASN21 ASN22 LEU23 LEU24 GLY25 THR26 LYS27 VAL28 SER29 ILE30 ILE31 SER32 PRO33 LYS34 ALA35 GLY36 THR37 THR38 ARG39 MET40 ARG41 VAL42 LEU43 GLY44 VAL45 LYS46 ASN47 ILE48 PRO49 ASN50 GLU51 ALA52 GLN53 ILE54 ILE55 PHE56 LEU57 ASP58 THR59 PRO60 GLY61 ILE62 TYR63 GLU64 PRO65 LYS66 LYS67 SER68 ASP69 VAL70 LEU71 GLY72 HIS73 SER74 MET75 VAL76 GLU77 ILE78 ALA79 LYS80 GLN81 SER82 LEU83 GLU84 GLU85 ALA86 ASP87 VAL88 ILE89 LEU90 PHE91 MET92 ILE93 ASP94 ALA95 THR96 GLU97 GLY98 TRP99 ARG100 PRO101 ARG102 ASP103 GLU104 GLU105 ILE106 TYR107 GLN108 ASN109 PHE110 ILE111 LYS112 PRO113 LEU114 ASN115 LYS116 PRO117 VAL118 ILE119 VAL120 VAL121 ILE122 ASN123 LYS124 ILE125 ASP126 LYS127 ILE128 GLY129 PRO130 ALA131 LYS132 ASN133 VAL134 LEU135 PRO136 LEU137 ILE138 ASP139 GLU140 ILE141 HIS142 LYS143 LYS144 HIS145 PRO146 GLU147 LEU148 THR149 GLU150 ILE151 VAL152 PRO153 ILE154 SER155 ALA156 LEU157 LYS158 GLY159 ALA160 ASN161 LEU162 ASP163 GLU164 LEU165 VAL166 LYS167 THR168 ILE169 LEU170 LYS171 TYR172 LEU173 PRO174 GLU175 GLY176 GLU177 PRO178 LEU179 PHE180 PRO181 GLU182 ASP183 MET184 ILE185 THR186 ASP187 LEU188 PRO189 LEU190 ARG191 LEU192 LEU193 ALA194 ALA195 GLU196 ILE197 VAL198 ARG199 GLU200 LYS201 ALA202 MET203 MET204 LEU205 THR206 ARG207 GLU208 GLU209 VAL210 PRO211 THR212 SER213 ILE214 ALA215 VAL216 LYS217 ILE218 ASN219 GLU220 ILE221 LYS222 PRO223 GLY224 ASP225 ALA226 ASN227 PRO228 ASN229 MET230 LEU231 VAL232 ILE233 LYS234 GLY235 GLU236 ILE237 ILE238 VAL239 ASP240 ARG241 GLU242 ASN243 LEU244 LYS245 PRO246 ILE247 ILE248 ILE249 GLY250 LYS251 LYS252 GLY253 GLN254 ARG255 LEU256 LYS257 GLU258 ILE259 GLY260 LYS261 ARG262 ALA263 ARG264 GLN265 GLU266 LEU267 GLU268 LEU269 ILE270 LEU271 GLY272 ARG273 PRO274 VAL275 TYR276 LEU277 GLU278 LEU279 TRP280 VAL281 LYS282 VAL283 VAL284 PRO285 ASP286 TRP287 ARG288 ARG289 ARG290 PRO291 GLU292 TYR293 VAL294 ARG295 LEU296 PHE297 GLY298 TYR299 ALA300 LEU301
Nucleic acids
Unit 2 C1506 A1507 A1508 C1509 C1510 G1511 U1512 A1513 G1514 G1515 G1516 G1517 A1518 A1519 C1520 C1521 U1522 G1523 C1524 G1525 G1526 U1527 U1528 G1529 G1530 A1531 U1532 C1533 A1534 C1535 C1536 U1537 C1538 C1539
Ligands
Unit 3 MG401 GNP402 ACT502 ACT503 ACT505 ACT506 MRD507 MRD508
Unit 4 CA501 ACT504
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany