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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ANTITERMINATION FACTORS NUSB AND NUSE I WITH BOXA RNA
Keywords CROSS SPECIES NUSB-NUSE-RNA INTERACTION, TRANSCRIPTION ELONG GENE REGULATION, PROTEIN-RNA INTERACTION, TRANSCRIPTION-RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   N UTILIZATION SUBSTANCE PROTEIN B  A 138 2291 0
2  Protein   N UTILIZATION SUBSTANCE PROTEIN B  B 137 2280 0
3  Protein   30S RIBOSOMAL PROTEIN S10  J 79 1316 0
4  Protein   30S RIBOSOMAL PROTEIN S10  K 80 1340 0
5  DNA/RNA    R 9 253 0
6  RNA    S 10 317 0
7  Ligand   N UTILIZATION SUBSTANCE PROTEIN B  A 5 0 75
8  Ligand   N UTILIZATION SUBSTANCE PROTEIN B  B 3 0 41
9  Ligand   30S RIBOSOMAL PROTEIN S10  J 1 0 17
10  Ligand   5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'  R 1 0 17
11  Ligand   5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'  S 2 0 34
12 Water     239 0 239
total       704 7797 423

Proteins
Unit 1 MET1 ARG2 TYR3 ARG4 LYS5 GLY6 ALA7 ARG8 ASP9 THR10 ALA11 PHE12 LEU13 VAL14 LEU15 TYR16 ARG17 TRP18 ASP19 LEU20 ARG21 GLY22 GLU23 ASN24 PRO25 GLY26 GLU27 LEU28 PHE29 LYS30 GLU31 VAL32 VAL33 GLU34 GLU35 LYS36 ASN37 ILE38 LYS39 ASN40 LYS41 ASP42 ALA43 TYR44 GLU45 TYR46 ALA47 LYS48 LYS49 LEU50 VAL51 ASP52 THR53 ALA54 VAL55 ARG56 HIS57 ILE58 GLU59 GLU60 ILE61 ASP62 SER63 ILE64 ILE65 GLU66 LYS67 HIS68 LEU69 LYS70 GLY71 TRP72 SER73 ILE74 ASP75 ARG76 LEU77 GLY78 TYR79 VAL80 GLU81 ARG82 ASN83 ALA84 LEU85 ARG86 LEU87 GLY88 VAL89 ALA90 GLU91 LEU92 ILE93 PHE94 LEU95 LYS96 SER97 LYS98 GLU99 PRO100 GLY101 ARG102 VAL103 PHE104 ILE105 ASP106 ILE107 VAL108 ASP109 LEU110 VAL111 LYS112 LYS113 TYR114 ALA115 ASP116 GLU117 LYS118 ALA119 GLY120 LYS121 PHE122 VAL123 ASN124 GLY125 VAL126 LEU127 SER128 ALA129 ILE130 TYR131 LYS132 ALA133 TYR134 ILE135 THR136 SER137 SER138
Unit 2 MET1 ARG2 TYR3 ARG4 LYS5 GLY6 ALA7 ARG8 ASP9 THR10 ALA11 PHE12 LEU13 VAL14 LEU15 TYR16 ARG17 TRP18 ASP19 LEU20 ARG21 GLY22 GLU23 ASN24 PRO25 GLY26 GLU27 LEU28 PHE29 LYS30 GLU31 VAL32 VAL33 GLU34 GLU35 LYS36 ASN37 ILE38 LYS39 ASN40 LYS41 ASP42 ALA43 TYR44 GLU45 TYR46 ALA47 LYS48 LYS49 LEU50 VAL51 ASP52 THR53 ALA54 VAL55 ARG56 HIS57 ILE58 GLU59 GLU60 ILE61 ASP62 SER63 ILE64 ILE65 GLU66 LYS67 HIS68 LEU69 LYS70 GLY71 TRP72 SER73 ILE74 ASP75 ARG76 LEU77 GLY78 TYR79 VAL80 GLU81 ARG82 ASN83 ALA84 LEU85 ARG86 LEU87 GLY88 VAL89 ALA90 GLU91 LEU92 ILE93 PHE94 LEU95 LYS96 SER97 LYS98 GLU99 PRO100 GLY101 ARG102 VAL103 PHE104 ILE105 ASP106 ILE107 VAL108 ASP109 LEU110 VAL111 LYS112 LYS113 TYR114 ALA115 ASP116 GLU117 LYS118 ALA119 GLY120 LYS121 PHE122 VAL123 ASN124 GLY125 VAL126 LEU127 SER128 ALA129 ILE130 TYR131 LYS132 ALA133 TYR134 ILE135 THR136 SER137
Unit 3 GLN3 GLU4 LYS5 ILE6 ARG7 ILE8 LYS9 LEU10 ARG11 ALA12 TYR13 ASP14 HIS15 ARG16 LEU17 LEU18 ASP19 GLN20 SER21 VAL22 LYS23 GLN24 ILE25 ILE26 GLU27 THR28 VAL29 LYS30 ARG31 THR32 GLY33 GLY34 VAL35 VAL36 LYS37 GLY38 PRO39 ILE40 PRO41 LEU42 PRO43 THR44 ARG45 LYS46 SER47 GLU48 PHE49 SER50 ARG51 ILE52 LEU53 ASP54 ILE55 ILE56 ARG57 PHE58 THR59 PRO60 GLN61 THR62 ILE63 GLU64 ALA65 LEU66 MET67 GLU68 ILE69 SER70 LEU71 PRO72 ALA73 GLY74 VAL75 ASP76 VAL77 GLU78 VAL79 LYS80 MET81
Unit 4 GLN3 GLU4 LYS5 ILE6 ARG7 ILE8 LYS9 LEU10 ARG11 ALA12 TYR13 ASP14 HIS15 ARG16 LEU17 LEU18 ASP19 GLN20 SER21 VAL22 LYS23 GLN24 ILE25 ILE26 GLU27 THR28 VAL29 LYS30 ARG31 THR32 GLY33 GLY34 VAL35 VAL36 LYS37 GLY38 PRO39 ILE40 PRO41 LEU42 PRO43 THR44 ARG45 LYS46 SER47 GLU48 PHE49 SER50 ARG51 ILE52 LEU53 ASP54 ILE55 ILE56 ARG57 PHE58 THR59 PRO60 GLN61 THR62 ILE63 GLU64 ALA65 LEU66 MET67 GLU68 ILE69 SER70 LEU71 PRO72 ALA73 GLY74 VAL75 ASP76 VAL77 GLU78 VAL79 LYS80 MET81 ARG82

Nucleic acids
Unit 5 G1 G2 C3 U4 C5 C6 U7 U8 G9
Unit 6 G1 G2 C3 U4 C5 C6 U7 U8 G9 G10

Ligands
Unit 7 PEG149 PEG150 PEG151 PEG152 ACT153
Unit 8 PEG149 PEG150 ACT151
Unit 9 PEG84
Unit 10 PEG13
Unit 11 PEG13 PEG14

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany