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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF P63 DNA BINDING DOMAIN IN COMPLEX WITH A 22 BAS RICH RESPONSE ELEMENT CONTAINING 2 BASE PAIR SPACER BETWEEN SITES
Keywords B DNA DOUBLE HELIX, PROTEIN-DNA COMPLEX, ZINC BINDING, BETA GREEK KEY, TRANSCRIPTION FACTOR, DNA BINDING, NUCLEUS, TRAN ACTIVATOR-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3QYN     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TUMOR PROTEIN 63  A 195 1501 0
2  Protein   TUMOR PROTEIN 63  B 193 1490 0
3  Protein   TUMOR PROTEIN 63  C 196 1508 0
4  Protein   TUMOR PROTEIN 63  D 190 1467 0
5  Other macromolecule   5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*TP*TP*AP*AP*AP*A *GP*TP*TP*T)-3'  E 22 448 0
6  Other macromolecule   5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*TP*TP*AP*AP*AP*A *GP*TP*TP*T)-3'  F 22 448 0
7  Ligand   TUMOR PROTEIN 63  A 1 0 1
8  Ligand   TUMOR PROTEIN 63  B 1 0 1
9  Ligand   TUMOR PROTEIN 63  C 1 0 1
10  Ligand   TUMOR PROTEIN 63  D 1 0 1
11 Water     467 0 467
total       1289 6862 471

Proteins
Unit 1 SER126 PRO127 SER128 ASN129 THR130 ASP131 TYR132 PRO133 GLY134 PRO135 HIS136 SER137 PHE138 ASP139 VAL140 SER141 PHE142 GLN143 GLN144 SER145 SER146 THR147 ALA148 LYS149 SER150 ALA151 THR152 TRP153 THR154 TYR155 SER156 THR157 GLU158 LEU159 LYS160 LYS161 LEU162 TYR163 CYS164 GLN165 ILE166 ALA167 LYS168 THR169 CYS170 PRO171 ILE172 GLN173 ILE174 LYS175 VAL176 MET177 THR178 PRO179 PRO180 PRO181 GLN182 GLY183 ALA184 VAL185 ILE186 ARG187 ALA188 MET189 PRO190 VAL191 TYR192 LYS193 LYS194 ALA195 GLU196 HIS197 VAL198 THR199 GLU200 VAL201 VAL202 LYS203 ARG204 CYS205 PRO206 ASN207 HIS208 GLU209 LEU210 SER211 ARG212 GLU213 PHE214 ASN215 GLU216 GLY217 GLN218 ILE219 ALA220 PRO221 PRO222 SER223 HIS224 LEU225 ILE226 ARG227 VAL228 GLU229 GLY230 ASN231 SER232 HIS233 ALA234 GLN235 TYR236 VAL237 GLU238 ASP239 PRO240 ILE241 THR242 GLY243 ARG244 GLN245 SER246 VAL247 LEU248 VAL249 PRO250 TYR251 GLU252 PRO253 PRO254 GLN255 VAL256 GLY257 THR258 GLU259 PHE260 THR261 THR262 VAL263 LEU264 TYR265 ASN266 PHE267 MET268 CYS269 ASN270 SER271 SER272 CYS273 VAL274 GLY275 GLY276 MET277 ASN278 ARG279 ARG280 PRO281 ILE282 LEU283 ILE284 ILE285 VAL286 THR287 LEU288 GLU289 THR290 ARG291 ASP292 GLY293 GLN294 VAL295 LEU296 GLY297 ARG298 ARG299 CYS300 PHE301 GLU302 ALA303 ARG304 ILE305 CYS306 ALA307 CYS308 PRO309 GLY310 ARG311 ASP312 ARG313 LYS314 ALA315 ASP316 GLU317 ASP318 SER319 ILE320
Unit 2 MET124 ALA125 SER126 PRO127 SER128 ASN129 THR130 ASP131 TYR132 PRO133 GLY134 PRO135 HIS136 SER137 PHE138 ASP139 VAL140 SER141 PHE142 GLN143 SER150 ALA151 THR152 TRP153 THR154 TYR155 SER156 THR157 GLU158 LEU159 LYS160 LYS161 LEU162 TYR163 CYS164 GLN165 ILE166 ALA167 LYS168 THR169 CYS170 PRO171 ILE172 GLN173 ILE174 LYS175 VAL176 MET177 THR178 PRO179 PRO180 PRO181 GLN182 GLY183 ALA184 VAL185 ILE186 ARG187 ALA188 MET189 PRO190 VAL191 TYR192 LYS193 LYS194 ALA195 GLU196 HIS197 VAL198 THR199 GLU200 VAL201 VAL202 LYS203 ARG204 CYS205 PRO206 ASN207 HIS208 GLU209 LEU210 SER211 ARG212 GLU213 PHE214 ASN215 GLU216 GLY217 GLN218 ILE219 ALA220 PRO221 PRO222 SER223 HIS224 LEU225 ILE226 ARG227 VAL228 GLU229 GLY230 ASN231 SER232 HIS233 ALA234 GLN235 TYR236 VAL237 GLU238 ASP239 PRO240 ILE241 THR242 GLY243 ARG244 GLN245 SER246 VAL247 LEU248 VAL249 PRO250 TYR251 GLU252 PRO253 PRO254 GLN255 VAL256 GLY257 THR258 GLU259 PHE260 THR261 THR262 VAL263 LEU264 TYR265 ASN266 PHE267 MET268 CYS269 ASN270 SER271 SER272 CYS273 VAL274 GLY275 GLY276 MET277 ASN278 ARG279 ARG280 PRO281 ILE282 LEU283 ILE284 ILE285 VAL286 THR287 LEU288 GLU289 THR290 ARG291 ASP292 GLY293 GLN294 VAL295 LEU296 GLY297 ARG298 ARG299 CYS300 PHE301 GLU302 ALA303 ARG304 ILE305 CYS306 ALA307 CYS308 PRO309 GLY310 ARG311 ASP312 ARG313 LYS314 ALA315 ASP316 GLU317 ASP318 SER319 ILE320 ARG321 LYS322
Unit 3 ALA125 SER126 PRO127 SER128 ASN129 THR130 ASP131 TYR132 PRO133 GLY134 PRO135 HIS136 SER137 PHE138 ASP139 VAL140 SER141 PHE142 GLN143 GLN144 SER145 SER146 THR147 ALA148 LYS149 SER150 ALA151 THR152 TRP153 THR154 TYR155 SER156 THR157 GLU158 LEU159 LYS160 LYS161 LEU162 TYR163 CYS164 GLN165 ILE166 ALA167 LYS168 THR169 CYS170 PRO171 ILE172 GLN173 ILE174 LYS175 VAL176 MET177 THR178 PRO179 PRO180 PRO181 GLN182 GLY183 ALA184 VAL185 ILE186 ARG187 ALA188 MET189 PRO190 VAL191 TYR192 LYS193 LYS194 ALA195 GLU196 HIS197 VAL198 THR199 GLU200 VAL201 VAL202 LYS203 ARG204 CYS205 PRO206 ASN207 HIS208 GLU209 LEU210 SER211 ARG212 GLU213 PHE214 ASN215 GLU216 GLY217 GLN218 ILE219 ALA220 PRO221 PRO222 SER223 HIS224 LEU225 ILE226 ARG227 VAL228 GLU229 GLY230 ASN231 SER232 HIS233 ALA234 GLN235 TYR236 VAL237 GLU238 ASP239 PRO240 ILE241 THR242 GLY243 ARG244 GLN245 SER246 VAL247 LEU248 VAL249 PRO250 TYR251 GLU252 PRO253 PRO254 GLN255 VAL256 GLY257 THR258 GLU259 PHE260 THR261 THR262 VAL263 LEU264 TYR265 ASN266 PHE267 MET268 CYS269 ASN270 SER271 SER272 CYS273 VAL274 GLY275 GLY276 MET277 ASN278 ARG279 ARG280 PRO281 ILE282 LEU283 ILE284 ILE285 VAL286 THR287 LEU288 GLU289 THR290 ARG291 ASP292 GLY293 GLN294 VAL295 LEU296 GLY297 ARG298 ARG299 CYS300 PHE301 GLU302 ALA303 ARG304 ILE305 CYS306 ALA307 CYS308 PRO309 GLY310 ARG311 ASP312 ARG313 LYS314 ALA315 ASP316 GLU317 ASP318 SER319 ILE320
Unit 4 MET124 ALA125 SER126 PRO127 SER128 ASN129 THR130 ASP131 TYR132 PRO133 GLY134 PRO135 HIS136 SER137 PHE138 ASP139 VAL140 SER141 PHE142 GLN143 ALA151 THR152 TRP153 THR154 TYR155 SER156 THR157 GLU158 LEU159 LYS160 LYS161 LEU162 TYR163 CYS164 GLN165 ILE166 ALA167 LYS168 THR169 CYS170 PRO171 ILE172 GLN173 ILE174 LYS175 VAL176 MET177 THR178 PRO179 PRO180 PRO181 GLN182 GLY183 ALA184 VAL185 ILE186 ARG187 ALA188 MET189 PRO190 VAL191 TYR192 LYS193 LYS194 ALA195 GLU196 HIS197 VAL198 THR199 GLU200 VAL201 VAL202 LYS203 ARG204 CYS205 PRO206 ASN207 HIS208 GLU209 LEU210 SER211 ARG212 GLU213 PHE214 ASN215 GLU216 GLY217 GLN218 ILE219 ALA220 PRO221 PRO222 SER223 HIS224 LEU225 ILE226 ARG227 VAL228 GLU229 GLY230 ASN231 SER232 HIS233 ALA234 GLN235 TYR236 VAL237 GLU238 ASP239 PRO240 ILE241 THR242 GLY243 ARG244 GLN245 SER246 VAL247 LEU248 VAL249 PRO250 TYR251 GLU252 PRO253 PRO254 GLN255 VAL256 GLY257 THR258 GLU259 PHE260 THR261 THR262 VAL263 LEU264 TYR265 ASN266 PHE267 MET268 CYS269 ASN270 SER271 SER272 CYS273 VAL274 GLY275 GLY276 MET277 ASN278 ARG279 ARG280 PRO281 ILE282 LEU283 ILE284 ILE285 VAL286 THR287 LEU288 GLU289 THR290 ARG291 ASP292 GLY293 GLN294 VAL295 LEU296 GLY297 ARG298 ARG299 CYS300 PHE301 GLU302 ALA303 ARG304 ILE305 CYS306 ALA307 CYS308 PRO309 GLY310 ARG311 ASP312 ARG313 LYS314 ALA315 ASP316 GLU317 ASP318 SER319 ILE320

Other macromolecules
Unit 5 DA1 DA2 DA3 DC4 DA5 DT6 DG7 DT8 DT9 DT10 DT11 DA12 DA13 DA14 DA15 DC16 DA17 DT18 DG19 DT20 DT21 DT22
Unit 6 DA1 DA2 DA3 DC4 DA5 DT6 DG7 DT8 DT9 DT10 DT11 DA12 DA13 DA14 DA15 DC16 DA17 DT18 DG19 DT20 DT21 DT22

Ligands
Unit 7 ZN901
Unit 8 ZN901
Unit 9 ZN901
Unit 10 ZN901

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany