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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA PYRUVATE KINASE(LMP COMPLEX WITH PONCEAU S AND ACID BLUE 25.
Keywords PYRUVATE KINASE, GLYCOLYSIS, TIM BARREL, SUGAR KINASE, ADP/A BINDING, CYTOSOL, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3QV7     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYRUVATE KINASE  D 494 3764 0
2  Protein   PYRUVATE KINASE  A 493 3756 0
3  Protein   PYRUVATE KINASE  B 400 3036 0
4  Protein   PYRUVATE KINASE  C 398 3016 0
5  Ligand   PYRUVATE KINASE  D 5 0 55
6  Ligand   PYRUVATE KINASE  A 4 0 50
7  Ligand   PYRUVATE KINASE  B 6 0 158
8  Ligand   PYRUVATE KINASE  C 3 0 7
9 Water     505 0 505
total       2308 13572 775
Proteins
Unit 1 SER1 GLN2 LEU3 ALA4 HIS5 ASN6 LEU7 THR8 LEU9 SER10 ILE11 PHE12 ASP13 PRO14 VAL15 ALA16 ASN17 TYR18 ARG19 ALA20 ALA21 ARG22 ILE23 ILE24 CYS25 THR26 ILE27 GLY28 PRO29 SER30 THR31 GLN32 SER33 VAL34 GLU35 ALA36 LEU37 LYS38 GLY39 LEU40 ILE41 GLN42 SER43 GLY44 MET45 SER46 VAL47 ALA48 ARG49 MET50 ASN51 PHE52 SER53 HIS54 GLY55 SER56 HIS57 GLU58 TYR59 HIS60 GLN61 THR62 THR63 ILE64 ASN65 ASN66 VAL67 ARG68 GLN69 ALA70 ALA71 ALA72 GLU73 LEU74 GLY75 VAL76 ASN77 ILE78 ALA79 ILE80 ALA81 LEU82 ASP83 THR84 LYS85 GLY86 PRO87 GLU88 ILE89 ARG90 THR91 GLY92 GLN93 PHE94 VAL95 GLY96 GLY97 ASP98 ALA99 VAL100 MET101 GLU102 ARG103 GLY104 ALA105 THR106 CYS107 TYR108 VAL109 THR110 THR111 ASP112 PRO113 ALA114 PHE115 ALA116 ASP117 LYS118 GLY119 THR120 LYS121 ASP122 LYS123 PHE124 TYR125 ILE126 ASP127 TYR128 GLN129 ASN130 LEU131 SER132 LYS133 VAL134 VAL135 ARG136 PRO137 GLY138 ASN139 TYR140 ILE141 TYR142 ILE143 ASP144 ASP145 GLY146 ILE147 LEU148 ILE149 LEU150 GLN151 VAL152 GLN153 SER154 HIS155 GLU156 ASP157 GLU158 GLN159 THR160 LEU161 GLU162 CYS163 THR164 VAL165 THR166 ASN167 SER168 HIS169 THR170 ILE171 SER172 ASP173 ARG174 ARG175 GLY176 VAL177 ASN178 LEU179 PRO180 GLY181 CYS182 ASP183 VAL184 ASP185 LEU186 PRO187 ALA188 VAL189 SER190 ALA191 LYS192 ASP193 ARG194 VAL195 ASP196 LEU197 GLN198 PHE199 GLY200 VAL201 GLU202 GLN203 GLY204 VAL205 ASP206 MET207 ILE208 PHE209 ALA210 SER211 PHE212 ILE213 ARG214 SER215 ALA216 GLU217 GLN218 VAL219 GLY220 ASP221 VAL222 ARG223 LYS224 ALA225 LEU226 GLY227 PRO228 LYS229 GLY230 ARG231 ASP232 ILE233 MET234 ILE235 ILE236 CYS237 LYS238 ILE239 GLU240 ASN241 HIS242 GLN243 GLY244 VAL245 GLN246 ASN247 ILE248 ASP249 SER250 ILE251 ILE252 GLU253 GLU254 SER255 ASP256 GLY257 ILE258 MET259 VAL260 ALA261 ARG262 GLY263 ASP264 LEU265 GLY266 VAL267 GLU268 ILE269 PRO270 ALA271 GLU272 LYS273 VAL274 VAL275 VAL276 ALA277 GLN278 LYS279 ILE280 LEU281 ILE282 SER283 LYS284 CYS285 ASN286 VAL287 ALA288 GLY289 LYS290 PRO291 VAL292 ILE293 CYS294 ALA295 THR296 GLN297 MET298 LEU299 GLU300 SER301 MET302 THR303 TYR304 ASN305 PRO306 ARG307 PRO308 THR309 ARG310 ALA311 GLU312 VAL313 SER314 ASP315 VAL316 ALA317 ASN318 ALA319 VAL320 PHE321 ASN322 GLY323 ALA324 ASP325 CYS326 VAL327 MET328 LEU329 SER330 GLY331 GLU332 THR333 ALA334 LYS335 GLY336 LYS337 TYR338 PRO339 ASN340 GLU341 VAL342 VAL343 GLN344 TYR345 MET346 ALA347 ARG348 ILE349 CYS350 LEU351 GLU352 ALA353 GLN354 SER355 ALA356 LEU357 ASN358 GLU359 TYR360 VAL361 PHE362 PHE363 ASN364 SER365 ILE366 LYS367 LYS368 LEU369 GLN370 HIS371 ILE372 PRO373 MET374 SER375 ALA376 ASP377 GLU378 ALA379 VAL380 CYS381 SER382 SER383 ALA384 VAL385 ASN386 SER387 VAL388 TYR389 GLU390 THR391 LYS392 ALA393 LYS394 ALA395 MET396 VAL397 VAL398 LEU399 SER400 ASN401 THR402 GLY403 ARG404 SER405 ALA406 ARG407 LEU408 VAL409 ALA410 LYS411 TYR412 ARG413 PRO414 ASN415 CYS416 PRO417 ILE418 VAL419 CYS420 VAL421 THR422 THR423 ARG424 LEU425 GLN426 THR427 CYS428 ARG429 GLN430 LEU431 ASN432 ILE433 THR434 GLN435 GLY436 VAL437 GLU438 SER439 VAL440 PHE441 PHE442 ASP443 ALA444 ASP445 LYS446 LEU447 GLY448 HIS449 ASP450 GLU451 GLY452 LYS453 GLU454 HIS455 ARG456 VAL457 ALA458 ALA459 GLY460 VAL461 GLU462 PHE463 ALA464 LYS465 SER466 LYS467 GLY468 TYR469 VAL470 GLN471 THR472 GLY473 ASP474 TYR475 CYS476 VAL477 VAL478 ILE479 HIS480 ALA481 ASP482 GLY487 TYR488 ALA489 ASN490 GLN491 THR492 ARG493 ILE494 LEU495 LEU496 VAL497 GLU498
Unit 2 SER1 GLN2 LEU3 ALA4 HIS5 ASN6 LEU7 THR8 LEU9 SER10 ILE11 PHE12 ASP13 PRO14 VAL15 ALA16 ASN17 TYR18 ARG19 ALA20 ALA21 ARG22 ILE23 ILE24 CYS25 THR26 ILE27 GLY28 PRO29 SER30 THR31 GLN32 SER33 VAL34 GLU35 ALA36 LEU37 LYS38 GLY39 LEU40 ILE41 GLN42 SER43 GLY44 MET45 SER46 VAL47 ALA48 ARG49 MET50 ASN51 PHE52 SER53 HIS54 GLY55 SER56 HIS57 GLU58 TYR59 HIS60 GLN61 THR62 THR63 ILE64 ASN65 ASN66 VAL67 ARG68 GLN69 ALA70 ALA71 ALA72 GLU73 LEU74 GLY75 VAL76 ASN77 ILE78 ALA79 ILE80 ALA81 LEU82 ASP83 THR84 LYS85 GLY86 PRO87 GLU88 ILE89 ARG90 THR91 GLY92 GLN93 PHE94 VAL95 GLY96 GLY97 ASP98 ALA99 VAL100 MET101 GLU102 ARG103 GLY104 ALA105 THR106 CYS107 TYR108 VAL109 THR110 THR111 ASP112 PRO113 ALA114 PHE115 ALA116 ASP117 LYS118 GLY119 THR120 LYS121 ASP122 LYS123 PHE124 TYR125 ILE126 ASP127 TYR128 GLN129 ASN130 LEU131 SER132 LYS133 VAL134 VAL135 ARG136 PRO137 GLY138 ASN139 TYR140 ILE141 TYR142 ILE143 ASP144 ASP145 GLY146 ILE147 LEU148 ILE149 LEU150 GLN151 VAL152 GLN153 SER154 HIS155 GLU156 ASP157 GLU158 GLN159 THR160 LEU161 GLU162 CYS163 THR164 VAL165 THR166 ASN167 SER168 HIS169 THR170 ILE171 SER172 ASP173 ARG174 ARG175 GLY176 VAL177 ASN178 LEU179 PRO180 GLY181 CYS182 ASP183 VAL184 ASP185 LEU186 PRO187 ALA188 VAL189 SER190 ALA191 LYS192 ASP193 ARG194 VAL195 ASP196 LEU197 GLN198 PHE199 GLY200 VAL201 GLU202 GLN203 GLY204 VAL205 ASP206 MET207 ILE208 PHE209 ALA210 SER211 PHE212 ILE213 ARG214 SER215 ALA216 GLU217 GLN218 VAL219 GLY220 ASP221 VAL222 ARG223 LYS224 ALA225 LEU226 GLY227 PRO228 LYS229 GLY230 ARG231 ASP232 ILE233 MET234 ILE235 ILE236 CYS237 LYS238 ILE239 GLU240 ASN241 HIS242 GLN243 GLY244 VAL245 GLN246 ASN247 ILE248 ASP249 SER250 ILE251 ILE252 GLU253 GLU254 SER255 ASP256 GLY257 ILE258 MET259 VAL260 ALA261 ARG262 GLY263 ASP264 LEU265 GLY266 VAL267 GLU268 ILE269 PRO270 ALA271 GLU272 LYS273 VAL274 VAL275 VAL276 ALA277 GLN278 LYS279 ILE280 LEU281 ILE282 SER283 LYS284 CYS285 ASN286 VAL287 ALA288 GLY289 LYS290 PRO291 VAL292 ILE293 CYS294 ALA295 THR296 GLN297 MET298 LEU299 GLU300 SER301 MET302 THR303 TYR304 ASN305 PRO306 ARG307 PRO308 THR309 ARG310 ALA311 GLU312 VAL313 SER314 ASP315 VAL316 ALA317 ASN318 ALA319 VAL320 PHE321 ASN322 GLY323 ALA324 ASP325 CYS326 VAL327 MET328 LEU329 SER330 GLY331 GLU332 THR333 ALA334 LYS335 GLY336 LYS337 TYR338 PRO339 ASN340 GLU341 VAL342 VAL343 GLN344 TYR345 MET346 ALA347 ARG348 ILE349 CYS350 LEU351 GLU352 ALA353 GLN354 SER355 ALA356 LEU357 ASN358 GLU359 TYR360 VAL361 PHE362 PHE363 ASN364 SER365 ILE366 LYS367 LYS368 LEU369 GLN370 HIS371 ILE372 PRO373 MET374 SER375 ALA376 ASP377 GLU378 ALA379 VAL380 CYS381 SER382 SER383 ALA384 VAL385 ASN386 SER387 VAL388 TYR389 GLU390 THR391 LYS392 ALA393 LYS394 ALA395 MET396 VAL397 VAL398 LEU399 SER400 ASN401 THR402 GLY403 ARG404 SER405 ALA406 ARG407 LEU408 VAL409 ALA410 LYS411 TYR412 ARG413 PRO414 ASN415 CYS416 PRO417 ILE418 VAL419 CYS420 VAL421 THR422 THR423 ARG424 LEU425 GLN426 THR427 CYS428 ARG429 GLN430 LEU431 ASN432 ILE433 THR434 GLN435 GLY436 VAL437 GLU438 SER439 VAL440 PHE441 PHE442 ASP443 ALA444 ASP445 LYS446 LEU447 GLY448 HIS449 ASP450 GLU451 GLY452 LYS453 GLU454 HIS455 ARG456 VAL457 ALA458 ALA459 GLY460 VAL461 GLU462 PHE463 ALA464 LYS465 SER466 LYS467 GLY468 TYR469 VAL470 GLN471 THR472 GLY473 ASP474 TYR475 CYS476 VAL477 VAL478 ILE479 HIS480 ALA481 GLY487 TYR488 ALA489 ASN490 GLN491 THR492 ARG493 ILE494 LEU495 LEU496 VAL497 GLU498
Unit 3 SER1 GLN2 LEU3 ALA4 HIS5 ASN6 LEU7 THR8 LEU9 SER10 ILE11 PHE12 ASP13 PRO14 VAL15 ALA16 ASN17 TYR18 ARG19 ALA20 ALA21 ARG22 ILE23 ILE24 CYS25 THR26 ILE27 GLY28 PRO29 SER30 THR31 GLN32 SER33 VAL34 GLU35 ALA36 LEU37 LYS38 GLY39 LEU40 ILE41 GLN42 SER43 GLY44 MET45 SER46 VAL47 ALA48 ARG49 MET50 ASN51 PHE52 SER53 HIS54 GLY55 SER56 HIS57 GLU58 TYR59 HIS60 GLN61 THR62 THR63 ILE64 ASN65 ASN66 VAL67 ARG68 GLN69 ALA70 ALA71 ALA72 GLU73 LEU74 GLY75 VAL76 ASN77 ILE78 ALA79 ILE80 ALA81 LEU82 ASP83 THR84 LYS85 GLY86 PRO87 LEU186 PRO187 ALA188 VAL189 SER190 ALA191 LYS192 ASP193 ARG194 VAL195 ASP196 LEU197 GLN198 PHE199 GLY200 VAL201 GLU202 GLN203 GLY204 VAL205 ASP206 MET207 ILE208 PHE209 ALA210 SER211 PHE212 ILE213 ARG214 SER215 ALA216 GLU217 GLN218 VAL219 GLY220 ASP221 VAL222 ARG223 LYS224 ALA225 LEU226 GLY227 PRO228 LYS229 GLY230 ARG231 ASP232 ILE233 MET234 ILE235 ILE236 CYS237 LYS238 ILE239 GLU240 ASN241 HIS242 GLN243 GLY244 VAL245 GLN246 ASN247 ILE248 ASP249 SER250 ILE251 ILE252 GLU253 GLU254 SER255 ASP256 GLY257 ILE258 MET259 VAL260 ALA261 ARG262 GLY263 ASP264 LEU265 GLY266 VAL267 GLU268 ILE269 PRO270 ALA271 GLU272 LYS273 VAL274 VAL275 VAL276 ALA277 GLN278 LYS279 ILE280 LEU281 ILE282 SER283 LYS284 CYS285 ASN286 VAL287 ALA288 GLY289 LYS290 PRO291 VAL292 ILE293 CYS294 ALA295 THR296 GLN297 MET298 LEU299 GLU300 SER301 MET302 THR303 TYR304 ASN305 PRO306 ARG307 PRO308 THR309 ARG310 ALA311 GLU312 VAL313 SER314 ASP315 VAL316 ALA317 ASN318 ALA319 VAL320 PHE321 ASN322 GLY323 ALA324 ASP325 CYS326 VAL327 MET328 LEU329 SER330 GLY331 GLU332 THR333 ALA334 LYS335 GLY336 LYS337 TYR338 PRO339 ASN340 GLU341 VAL342 VAL343 GLN344 TYR345 MET346 ALA347 ARG348 ILE349 CYS350 LEU351 GLU352 ALA353 GLN354 SER355 ALA356 LEU357 ASN358 GLU359 TYR360 VAL361 PHE362 PHE363 ASN364 SER365 ILE366 LYS367 LYS368 LEU369 GLN370 HIS371 ILE372 PRO373 MET374 SER375 ALA376 ASP377 GLU378 ALA379 VAL380 CYS381 SER382 SER383 ALA384 VAL385 ASN386 SER387 VAL388 TYR389 GLU390 THR391 LYS392 ALA393 LYS394 ALA395 MET396 VAL397 VAL398 LEU399 SER400 ASN401 THR402 GLY403 ARG404 SER405 ALA406 ARG407 LEU408 VAL409 ALA410 LYS411 TYR412 ARG413 PRO414 ASN415 CYS416 PRO417 ILE418 VAL419 CYS420 VAL421 THR422 THR423 ARG424 LEU425 GLN426 THR427 CYS428 ARG429 GLN430 LEU431 ASN432 ILE433 THR434 GLN435 GLY436 VAL437 GLU438 SER439 VAL440 PHE441 PHE442 ASP443 ALA444 ASP445 LYS446 LEU447 GLY448 HIS449 ASP450 GLU451 GLY452 LYS453 GLU454 HIS455 ARG456 VAL457 ALA458 ALA459 GLY460 VAL461 GLU462 PHE463 ALA464 LYS465 SER466 LYS467 GLY468 TYR469 VAL470 GLN471 THR472 GLY473 ASP474 TYR475 CYS476 VAL477 VAL478 ILE479 HIS480 ALA481 ASP482 HIS483 LYS484 VAL485 LYS486 GLY487 TYR488 ALA489 ASN490 GLN491 THR492 ARG493 ILE494 LEU495 LEU496 VAL497 GLU498
Unit 4 SER1 GLN2 LEU3 ALA4 HIS5 ASN6 LEU7 THR8 LEU9 SER10 ILE11 PHE12 ASP13 PRO14 VAL15 ALA16 ASN17 TYR18 ARG19 ALA20 ALA21 ARG22 ILE23 ILE24 CYS25 THR26 ILE27 GLY28 PRO29 SER30 THR31 GLN32 SER33 VAL34 GLU35 ALA36 LEU37 LYS38 GLY39 LEU40 ILE41 GLN42 SER43 GLY44 MET45 SER46 VAL47 ALA48 ARG49 MET50 ASN51 PHE52 SER53 HIS54 GLY55 SER56 HIS57 GLU58 TYR59 HIS60 GLN61 THR62 THR63 ILE64 ASN65 ASN66 VAL67 ARG68 GLN69 ALA70 ALA71 ALA72 GLU73 LEU74 GLY75 VAL76 ASN77 ILE78 ALA79 ILE80 ALA81 LEU82 ASP83 THR84 LYS85 GLY86 PRO87 VAL184 ASP185 LEU186 PRO187 ALA188 VAL189 SER190 ALA191 LYS192 ASP193 ARG194 VAL195 ASP196 LEU197 GLN198 PHE199 GLY200 VAL201 GLU202 GLN203 GLY204 VAL205 ASP206 MET207 ILE208 PHE209 ALA210 SER211 PHE212 ILE213 ARG214 SER215 ALA216 GLU217 GLN218 VAL219 GLY220 ASP221 VAL222 ARG223 LYS224 ALA225 LEU226 GLY227 PRO228 LYS229 GLY230 ARG231 ASP232 ILE233 MET234 ILE235 ILE236 CYS237 LYS238 ILE239 GLU240 ASN241 HIS242 GLN243 GLY244 VAL245 GLN246 ASN247 ILE248 ASP249 SER250 ILE251 ILE252 GLU253 GLU254 SER255 ASP256 GLY257 ILE258 MET259 VAL260 ALA261 ARG262 GLY263 ASP264 LEU265 GLY266 VAL267 GLU268 ILE269 PRO270 ALA271 GLU272 LYS273 VAL274 VAL275 VAL276 ALA277 GLN278 LYS279 ILE280 LEU281 ILE282 SER283 LYS284 CYS285 ASN286 VAL287 ALA288 GLY289 LYS290 PRO291 VAL292 ILE293 CYS294 ALA295 THR296 GLN297 MET298 LEU299 GLU300 SER301 MET302 THR303 TYR304 ASN305 PRO306 ARG307 PRO308 THR309 ARG310 ALA311 GLU312 VAL313 SER314 ASP315 VAL316 ALA317 ASN318 ALA319 VAL320 PHE321 ASN322 GLY323 ALA324 ASP325 CYS326 VAL327 MET328 LEU329 SER330 GLY331 GLU332 THR333 ALA334 LYS335 GLY336 LYS337 TYR338 PRO339 ASN340 GLU341 VAL342 VAL343 GLN344 TYR345 MET346 ALA347 ARG348 ILE349 CYS350 LEU351 GLU352 ALA353 GLN354 SER355 ALA356 LEU357 ASN358 GLU359 TYR360 VAL361 PHE362 PHE363 ASN364 SER365 ILE366 LYS367 LYS368 LEU369 GLN370 HIS371 ILE372 PRO373 MET374 SER375 ALA376 ASP377 GLU378 ALA379 VAL380 CYS381 SER382 SER383 ALA384 VAL385 ASN386 SER387 VAL388 TYR389 GLU390 THR391 LYS392 ALA393 LYS394 ALA395 MET396 VAL397 VAL398 LEU399 SER400 ASN401 THR402 GLY403 ARG404 SER405 ALA406 ARG407 LEU408 VAL409 ALA410 LYS411 TYR412 ARG413 PRO414 ASN415 CYS416 PRO417 ILE418 VAL419 CYS420 VAL421 THR422 THR423 ARG424 LEU425 GLN426 THR427 CYS428 ARG429 GLN430 LEU431 ASN432 ILE433 THR434 GLN435 GLY436 VAL437 GLU438 SER439 VAL440 PHE441 PHE442 ASP443 ALA444 ASP445 LYS446 LEU447 GLY448 HIS449 ASP450 GLU451 GLY452 LYS453 GLU454 HIS455 ARG456 VAL457 ALA458 ALA459 GLY460 VAL461 GLU462 PHE463 ALA464 LYS465 SER466 LYS467 GLY468 TYR469 VAL470 GLN471 THR472 GLY473 ASP474 TYR475 CYS476 VAL477 VAL478 ILE479 HIS480 ALA481 ASP482 GLY487 TYR488 ALA489 ASN490 GLN491 THR492 ARG493 ILE494 LEU495 LEU496 VAL497 GLU498
Ligands
Unit 5 SO4499 SO4500 K501 K502 QV7503
Unit 6 QV7499 SO4500 K501 K502
Unit 7 QV7499 QV8500 QV7501 K502 K503 QV7504
Unit 8 SO4499 K500 K501
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany