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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PYROPHOSPHATASE FROM BACTEROIDES THETAIOTAOMICRON, A CLOSED CAP CONFORMATION
Keywords HYDROLASE, PYROPHOSPHATASE, MAGNESIUM BINDING SITE, NEW YORK RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, ENZYME FU INITIATIVE, EFI, PSI-2, PROTEIN STRUCTURE INITIATIVE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3QU2     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INORGANIC PYROPHOSPHATASE  A 221 1722 0
2  Protein   INORGANIC PYROPHOSPHATASE  B 221 1722 0
3  Protein   INORGANIC PYROPHOSPHATASE  C 221 1722 0
4  Protein   INORGANIC PYROPHOSPHATASE  D 221 1722 0
5  Ligand   INORGANIC PYROPHOSPHATASE  A 3 0 20
6  Ligand   INORGANIC PYROPHOSPHATASE  B 4 0 14
7  Ligand   INORGANIC PYROPHOSPHATASE  C 3 0 13
8  Ligand   INORGANIC PYROPHOSPHATASE  D 4 0 19
9 Water     649 0 649
total       1547 6888 715

Proteins
Unit 1 LYS4 LEU5 LYS6 ALA7 VAL8 LEU9 PHE10 ASP11 MET12 ASP13 GLY14 VAL15 LEU16 PHE17 ASN18 SER19 MET20 PRO21 TYR22 HIS23 SER24 GLU25 ALA26 TRP27 HIS28 GLN29 VAL30 MET31 LYS32 THR33 HIS34 GLY35 LEU36 ASP37 LEU38 SER39 ARG40 GLU41 GLU42 ALA43 TYR44 MET45 HIS46 GLU47 GLY48 ARG49 THR50 GLY51 ALA52 SER53 THR54 ILE55 ASN56 ILE57 VAL58 PHE59 GLN60 ARG61 GLU62 LEU63 GLY64 LYS65 GLU66 ALA67 THR68 GLN69 GLU70 GLU71 ILE72 GLU73 SER74 ILE75 TYR76 HIS77 GLU78 LYS79 SER80 ILE81 LEU82 PHE83 ASN84 SER85 TYR86 PRO87 GLU88 ALA89 GLU90 ARG91 MET92 PRO93 GLY94 ALA95 TRP96 GLU97 LEU98 LEU99 GLN100 LYS101 VAL102 LYS103 SER104 GLU105 GLY106 LEU107 THR108 PRO109 MET110 VAL111 VAL112 THR113 GLY114 SER115 GLY116 GLN117 LEU118 SER119 LEU120 LEU121 GLU122 ARG123 LEU124 GLU125 HIS126 ASN127 PHE128 PRO129 GLY130 MET131 PHE132 HIS133 LYS134 GLU135 LEU136 MET137 VAL138 THR139 ALA140 PHE141 ASP142 VAL143 LYS144 TYR145 GLY146 LYS147 PRO148 ASN149 PRO150 GLU151 PRO152 TYR153 LEU154 MET155 ALA156 LEU157 LYS158 LYS159 GLY160 GLY161 LEU162 LYS163 ALA164 ASP165 GLU166 ALA167 VAL168 VAL169 ILE170 GLU171 ASN172 ALA173 PRO174 LEU175 GLY176 VAL177 GLU178 ALA179 GLY180 HIS181 LYS182 ALA183 GLY184 ILE185 PHE186 THR187 ILE188 ALA189 VAL190 ASN191 THR192 GLY193 PRO194 LEU195 ASP196 GLY197 GLN198 VAL199 LEU200 LEU201 ASP202 ALA203 GLY204 ALA205 ASP206 LEU207 LEU208 PHE209 PRO210 SER211 MET212 GLN213 THR214 LEU215 CYS216 ASP217 SER218 TRP219 ASP220 THR221 ILE222 MET223 LEU224
Unit 2 LYS4 LEU5 LYS6 ALA7 VAL8 LEU9 PHE10 ASP11 MET12 ASP13 GLY14 VAL15 LEU16 PHE17 ASN18 SER19 MET20 PRO21 TYR22 HIS23 SER24 GLU25 ALA26 TRP27 HIS28 GLN29 VAL30 MET31 LYS32 THR33 HIS34 GLY35 LEU36 ASP37 LEU38 SER39 ARG40 GLU41 GLU42 ALA43 TYR44 MET45 HIS46 GLU47 GLY48 ARG49 THR50 GLY51 ALA52 SER53 THR54 ILE55 ASN56 ILE57 VAL58 PHE59 GLN60 ARG61 GLU62 LEU63 GLY64 LYS65 GLU66 ALA67 THR68 GLN69 GLU70 GLU71 ILE72 GLU73 SER74 ILE75 TYR76 HIS77 GLU78 LYS79 SER80 ILE81 LEU82 PHE83 ASN84 SER85 TYR86 PRO87 GLU88 ALA89 GLU90 ARG91 MET92 PRO93 GLY94 ALA95 TRP96 GLU97 LEU98 LEU99 GLN100 LYS101 VAL102 LYS103 SER104 GLU105 GLY106 LEU107 THR108 PRO109 MET110 VAL111 VAL112 THR113 GLY114 SER115 GLY116 GLN117 LEU118 SER119 LEU120 LEU121 GLU122 ARG123 LEU124 GLU125 HIS126 ASN127 PHE128 PRO129 GLY130 MET131 PHE132 HIS133 LYS134 GLU135 LEU136 MET137 VAL138 THR139 ALA140 PHE141 ASP142 VAL143 LYS144 TYR145 GLY146 LYS147 PRO148 ASN149 PRO150 GLU151 PRO152 TYR153 LEU154 MET155 ALA156 LEU157 LYS158 LYS159 GLY160 GLY161 LEU162 LYS163 ALA164 ASP165 GLU166 ALA167 VAL168 VAL169 ILE170 GLU171 ASN172 ALA173 PRO174 LEU175 GLY176 VAL177 GLU178 ALA179 GLY180 HIS181 LYS182 ALA183 GLY184 ILE185 PHE186 THR187 ILE188 ALA189 VAL190 ASN191 THR192 GLY193 PRO194 LEU195 ASP196 GLY197 GLN198 VAL199 LEU200 LEU201 ASP202 ALA203 GLY204 ALA205 ASP206 LEU207 LEU208 PHE209 PRO210 SER211 MET212 GLN213 THR214 LEU215 CYS216 ASP217 SER218 TRP219 ASP220 THR221 ILE222 MET223 LEU224
Unit 3 LYS4 LEU5 LYS6 ALA7 VAL8 LEU9 PHE10 ASP11 MET12 ASP13 GLY14 VAL15 LEU16 PHE17 ASN18 SER19 MET20 PRO21 TYR22 HIS23 SER24 GLU25 ALA26 TRP27 HIS28 GLN29 VAL30 MET31 LYS32 THR33 HIS34 GLY35 LEU36 ASP37 LEU38 SER39 ARG40 GLU41 GLU42 ALA43 TYR44 MET45 HIS46 GLU47 GLY48 ARG49 THR50 GLY51 ALA52 SER53 THR54 ILE55 ASN56 ILE57 VAL58 PHE59 GLN60 ARG61 GLU62 LEU63 GLY64 LYS65 GLU66 ALA67 THR68 GLN69 GLU70 GLU71 ILE72 GLU73 SER74 ILE75 TYR76 HIS77 GLU78 LYS79 SER80 ILE81 LEU82 PHE83 ASN84 SER85 TYR86 PRO87 GLU88 ALA89 GLU90 ARG91 MET92 PRO93 GLY94 ALA95 TRP96 GLU97 LEU98 LEU99 GLN100 LYS101 VAL102 LYS103 SER104 GLU105 GLY106 LEU107 THR108 PRO109 MET110 VAL111 VAL112 THR113 GLY114 SER115 GLY116 GLN117 LEU118 SER119 LEU120 LEU121 GLU122 ARG123 LEU124 GLU125 HIS126 ASN127 PHE128 PRO129 GLY130 MET131 PHE132 HIS133 LYS134 GLU135 LEU136 MET137 VAL138 THR139 ALA140 PHE141 ASP142 VAL143 LYS144 TYR145 GLY146 LYS147 PRO148 ASN149 PRO150 GLU151 PRO152 TYR153 LEU154 MET155 ALA156 LEU157 LYS158 LYS159 GLY160 GLY161 LEU162 LYS163 ALA164 ASP165 GLU166 ALA167 VAL168 VAL169 ILE170 GLU171 ASN172 ALA173 PRO174 LEU175 GLY176 VAL177 GLU178 ALA179 GLY180 HIS181 LYS182 ALA183 GLY184 ILE185 PHE186 THR187 ILE188 ALA189 VAL190 ASN191 THR192 GLY193 PRO194 LEU195 ASP196 GLY197 GLN198 VAL199 LEU200 LEU201 ASP202 ALA203 GLY204 ALA205 ASP206 LEU207 LEU208 PHE209 PRO210 SER211 MET212 GLN213 THR214 LEU215 CYS216 ASP217 SER218 TRP219 ASP220 THR221 ILE222 MET223 LEU224
Unit 4 LYS4 LEU5 LYS6 ALA7 VAL8 LEU9 PHE10 ASP11 MET12 ASP13 GLY14 VAL15 LEU16 PHE17 ASN18 SER19 MET20 PRO21 TYR22 HIS23 SER24 GLU25 ALA26 TRP27 HIS28 GLN29 VAL30 MET31 LYS32 THR33 HIS34 GLY35 LEU36 ASP37 LEU38 SER39 ARG40 GLU41 GLU42 ALA43 TYR44 MET45 HIS46 GLU47 GLY48 ARG49 THR50 GLY51 ALA52 SER53 THR54 ILE55 ASN56 ILE57 VAL58 PHE59 GLN60 ARG61 GLU62 LEU63 GLY64 LYS65 GLU66 ALA67 THR68 GLN69 GLU70 GLU71 ILE72 GLU73 SER74 ILE75 TYR76 HIS77 GLU78 LYS79 SER80 ILE81 LEU82 PHE83 ASN84 SER85 TYR86 PRO87 GLU88 ALA89 GLU90 ARG91 MET92 PRO93 GLY94 ALA95 TRP96 GLU97 LEU98 LEU99 GLN100 LYS101 VAL102 LYS103 SER104 GLU105 GLY106 LEU107 THR108 PRO109 MET110 VAL111 VAL112 THR113 GLY114 SER115 GLY116 GLN117 LEU118 SER119 LEU120 LEU121 GLU122 ARG123 LEU124 GLU125 HIS126 ASN127 PHE128 PRO129 GLY130 MET131 PHE132 HIS133 LYS134 GLU135 LEU136 MET137 VAL138 THR139 ALA140 PHE141 ASP142 VAL143 LYS144 TYR145 GLY146 LYS147 PRO148 ASN149 PRO150 GLU151 PRO152 TYR153 LEU154 MET155 ALA156 LEU157 LYS158 LYS159 GLY160 GLY161 LEU162 LYS163 ALA164 ASP165 GLU166 ALA167 VAL168 VAL169 ILE170 GLU171 ASN172 ALA173 PRO174 LEU175 GLY176 VAL177 GLU178 ALA179 GLY180 HIS181 LYS182 ALA183 GLY184 ILE185 PHE186 THR187 ILE188 ALA189 VAL190 ASN191 THR192 GLY193 PRO194 LEU195 ASP196 GLY197 GLN198 VAL199 LEU200 LEU201 ASP202 ALA203 GLY204 ALA205 ASP206 LEU207 LEU208 PHE209 PRO210 SER211 MET212 GLN213 THR214 LEU215 CYS216 ASP217 SER218 TRP219 ASP220 THR221 ILE222 MET223 LEU224

Ligands
Unit 5 MG225 GOL226 CIT227
Unit 6 MG225 GOL226 GOL227 CL228
Unit 7 MG225 GOL226 GOL227
Unit 8 MG225 GOL226 GOL227 GOL228

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany