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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS FOR DNA RECOGNITION BY CONSTITUTIVE SMAD4 M
Keywords MH1, TRANSCRIPTION FACTOR, DNA BINDING, SIGNALING, TRANSCRIP COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3QSV     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  A 129 1034 0
2  Protein   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  B 129 1034 0
3  Protein   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  C 124 1001 0
4  Protein   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  D 125 1007 0
5  Other macromolecule   DNA (5'- D(P*TP*GP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*CP*A)-3')  E 16 328 0
6  Other macromolecule   DNA (5'- D(P*TP*GP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*CP*A)-3')  F 16 328 0
7  Other macromolecule   DNA (5'- D(P*TP*GP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*CP*A)-3')  G 16 328 0
8  Other macromolecule   DNA (5'- D(P*TP*GP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*CP*A)-3')  H 16 328 0
9  Ligand   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  A 1 0 1
10  Ligand   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  B 1 0 1
11  Ligand   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  C 1 0 1
12  Ligand   MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4  D 1 0 1
13 Water     9 0 9
total       584 5388 13

Proteins
Unit 1 PRO10 THR11 SER12 ASN13 ASP14 ALA15 CYS16 LEU17 SER18 ILE19 VAL20 HIS21 SER22 LEU23 MET24 CYS25 HIS26 ARG27 GLN28 GLY29 GLY30 GLU31 SER32 GLU33 THR34 PHE35 ALA36 LYS37 ARG38 ALA39 ILE40 GLU41 SER42 LEU43 VAL44 LYS45 LYS46 LEU47 LYS48 GLU49 LYS50 LYS51 ASP52 GLU53 LEU54 ASP55 SER56 LEU57 ILE58 THR59 ALA60 ILE61 THR62 THR63 ASN64 GLY65 ALA66 HIS67 PRO68 SER69 LYS70 CYS71 VAL72 THR73 ILE74 GLN75 ARG76 THR77 LEU78 ASP79 GLY80 ARG81 LEU82 GLN83 VAL84 ALA85 GLY86 ARG87 LYS88 GLY89 PHE90 PRO91 HIS92 VAL93 ILE94 TYR95 ALA96 ARG97 LEU98 TRP99 ARG100 TRP101 PRO102 ASP103 LEU104 HIS105 LYS106 ASN107 GLU108 LEU109 LYS110 HIS111 VAL112 LYS113 TYR114 CYS115 GLN116 TYR117 ALA118 PHE119 ASP120 LEU121 LYS122 CYS123 ASP124 SER125 VAL126 CYS127 VAL128 ASN129 PRO130 TYR131 HIS132 TYR133 GLU134 ARG135 VAL136 VAL137 SER138
Unit 2 PRO10 THR11 SER12 ASN13 ASP14 ALA15 CYS16 LEU17 SER18 ILE19 VAL20 HIS21 SER22 LEU23 MET24 CYS25 HIS26 ARG27 GLN28 GLY29 GLY30 GLU31 SER32 GLU33 THR34 PHE35 ALA36 LYS37 ARG38 ALA39 ILE40 GLU41 SER42 LEU43 VAL44 LYS45 LYS46 LEU47 LYS48 GLU49 LYS50 LYS51 ASP52 GLU53 LEU54 ASP55 SER56 LEU57 ILE58 THR59 ALA60 ILE61 THR62 THR63 ASN64 GLY65 ALA66 HIS67 PRO68 SER69 LYS70 CYS71 VAL72 THR73 ILE74 GLN75 ARG76 THR77 LEU78 ASP79 GLY80 ARG81 LEU82 GLN83 VAL84 ALA85 GLY86 ARG87 LYS88 GLY89 PHE90 PRO91 HIS92 VAL93 ILE94 TYR95 ALA96 ARG97 LEU98 TRP99 ARG100 TRP101 PRO102 ASP103 LEU104 HIS105 LYS106 ASN107 GLU108 LEU109 LYS110 HIS111 VAL112 LYS113 TYR114 CYS115 GLN116 TYR117 ALA118 PHE119 ASP120 LEU121 LYS122 CYS123 ASP124 SER125 VAL126 CYS127 VAL128 ASN129 PRO130 TYR131 HIS132 TYR133 GLU134 ARG135 VAL136 VAL137 SER138
Unit 3 ASN13 ASP14 ALA15 CYS16 LEU17 SER18 ILE19 VAL20 HIS21 SER22 LEU23 MET24 CYS25 HIS26 ARG27 GLN28 GLY29 GLY30 GLU31 SER32 GLU33 THR34 PHE35 ALA36 LYS37 ARG38 ALA39 ILE40 GLU41 SER42 LEU43 VAL44 LYS45 LYS46 LEU47 LYS48 GLU49 LYS50 LYS51 ASP52 GLU53 LEU54 ASP55 SER56 LEU57 ILE58 THR59 ALA60 ILE61 THR62 THR63 ASN64 GLY65 ALA66 HIS67 PRO68 SER69 LYS70 CYS71 VAL72 THR73 ILE74 GLN75 ARG76 THR77 LEU78 ASP79 GLY80 ARG81 LEU82 GLN83 VAL84 ALA85 GLY86 ARG87 LYS88 GLY89 PHE90 PRO91 HIS92 VAL93 ILE94 TYR95 ALA96 ARG97 LEU98 TRP99 ARG100 TRP101 PRO102 ASP103 LEU104 HIS105 LYS106 ASN107 GLU108 LEU109 LYS110 HIS111 VAL112 LYS113 TYR114 CYS115 GLN116 TYR117 ALA118 PHE119 ASP120 LEU121 LYS122 CYS123 ASP124 SER125 VAL126 CYS127 VAL128 ASN129 PRO130 TYR131 HIS132 TYR133 GLU134 ARG135 VAL136
Unit 4 SER12 ASN13 ASP14 ALA15 CYS16 LEU17 SER18 ILE19 VAL20 HIS21 SER22 LEU23 MET24 CYS25 HIS26 ARG27 GLN28 GLY29 GLY30 GLU31 SER32 GLU33 THR34 PHE35 ALA36 LYS37 ARG38 ALA39 ILE40 GLU41 SER42 LEU43 VAL44 LYS45 LYS46 LEU47 LYS48 GLU49 LYS50 LYS51 ASP52 GLU53 LEU54 ASP55 SER56 LEU57 ILE58 THR59 ALA60 ILE61 THR62 THR63 ASN64 GLY65 ALA66 HIS67 PRO68 SER69 LYS70 CYS71 VAL72 THR73 ILE74 GLN75 ARG76 THR77 LEU78 ASP79 GLY80 ARG81 LEU82 GLN83 VAL84 ALA85 GLY86 ARG87 LYS88 GLY89 PHE90 PRO91 HIS92 VAL93 ILE94 TYR95 ALA96 ARG97 LEU98 TRP99 ARG100 TRP101 PRO102 ASP103 LEU104 HIS105 LYS106 ASN107 GLU108 LEU109 LYS110 HIS111 VAL112 LYS113 TYR114 CYS115 GLN116 TYR117 ALA118 PHE119 ASP120 LEU121 LYS122 CYS123 ASP124 SER125 VAL126 CYS127 VAL128 ASN129 PRO130 TYR131 HIS132 TYR133 GLU134 ARG135 VAL136

Other macromolecules
Unit 5 DT1000 DG1001 DC1002 DA1003 DG1004 DT1005 DC1006 DT1007 DA1008 DG1009 DA1010 DC1011 DT1012 DG1013 DC1014 DA1015
Unit 6 DT2000 DG2001 DC2002 DA2003 DG2004 DT2005 DC2006 DT2007 DA2008 DG2009 DA2010 DC2011 DT2012 DG2013 DC2014 DA2015
Unit 7 DT1000 DG1001 DC1002 DA1003 DG1004 DT1005 DC1006 DT1007 DA1008 DG1009 DA1010 DC1011 DT1012 DG1013 DC1014 DA1015
Unit 8 DT2000 DG2001 DC2002 DA2003 DG2004 DT2005 DC2006 DT2007 DA2008 DG2009 DA2010 DC2011 DT2012 DG2013 DC2014 DA2015

Ligands
Unit 9 ZN1
Unit 10 ZN2
Unit 11 ZN3
Unit 12 ZN4

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany