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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CVIR (CHROMOBACTERIUM VIOLACEUM 12472) BINDING DOMAIN BOUND TO C10-HSL
Keywords QUORUM SENSING, AGONIST, ANTAGONIST, LUXR, ACYLATED HOMOSERI LACTONE, TRANSCRIPTION FACTOR, DNA BINDING PROTEIN, LIGAND DOMAIN, SIGNAL RECEPTOR, QUORUM SENSING TRANSCRIPTION RECEP DECANOYL-L-HOMOSERINE LACTONE, TRANSCRIPTION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3QP8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CVIR TRANSCRIPTIONAL REGULATOR  A 179 1390 0
2  Protein   CVIR TRANSCRIPTIONAL REGULATOR  B 184 1426 0
3  Protein   CVIR TRANSCRIPTIONAL REGULATOR  C 181 1406 0
4  Protein   CVIR TRANSCRIPTIONAL REGULATOR  D 184 1426 0
5  Ligand   CVIR TRANSCRIPTIONAL REGULATOR  A 1 0 18
6  Ligand   CVIR TRANSCRIPTIONAL REGULATOR  B 1 0 18
7  Ligand   CVIR TRANSCRIPTIONAL REGULATOR  C 1 0 18
8  Ligand   CVIR TRANSCRIPTIONAL REGULATOR  D 1 0 18
9 Water     470 0 470
total       1202 5648 542
Proteins
Unit 1 ALA9 ARG10 PRO11 LEU12 PRO13 ALA14 GLY15 LEU16 THR17 ALA18 SER19 GLN20 GLN21 TRP22 THR23 LEU24 LEU25 GLU26 TRP27 ILE28 HIS29 MET30 ALA31 GLY32 HIS33 ILE34 GLU35 THR36 GLU37 GLY38 GLU39 LEU40 LYS41 ALA42 PHE43 LEU44 ASP45 ASN46 ILE47 LEU48 SER49 GLN50 ALA51 PRO52 SER53 ASP54 ARG55 ILE56 ILE57 LEU58 VAL59 LEU60 GLY61 ARG62 LEU63 ASN64 ASN65 GLN66 ASN67 GLN68 ILE69 GLN70 ARG71 MET72 GLU73 LYS74 VAL75 LEU76 ASN77 VAL78 SER79 TYR80 PRO81 SER82 ASP83 TRP84 LEU85 ASN86 GLN87 TYR88 SER89 GLN90 GLU91 ASN92 PHE93 ALA94 GLN95 HIS96 ASP97 PRO98 ILE99 MET100 ARG101 ILE102 HIS103 LEU104 GLY105 GLN106 GLY107 PRO108 VAL109 ILE110 TRP111 GLU112 GLU113 ARG114 PHE115 SER116 ARG117 ALA118 LYS119 GLY120 SER121 GLU122 GLU123 LYS124 ARG125 PHE126 ILE127 ALA128 GLU129 ALA130 SER131 SER132 ASN133 GLY134 MET135 GLY136 SER137 GLY138 ILE139 THR140 PHE141 SER142 ALA143 ALA144 SER145 ASP146 ARG147 ASN148 ASN149 VAL150 GLY151 SER152 ILE153 LEU154 SER155 ILE156 GLY157 GLY158 LYS159 GLU160 PRO161 GLY162 ARG163 ASN164 ALA165 ALA166 LEU167 VAL168 ALA169 MET170 LEU171 ASN172 CYS173 LEU174 THR175 PRO176 HIS177 LEU178 HIS179 GLN180 ALA181 ALA182 VAL183 ARG184 ILE185 ALA186 ASN187
Unit 2 GLY4 SER5 HIS6 MET7 ASN8 ALA9 ARG10 PRO11 LEU12 PRO13 ALA14 GLY15 LEU16 THR17 ALA18 SER19 GLN20 GLN21 TRP22 THR23 LEU24 LEU25 GLU26 TRP27 ILE28 HIS29 MET30 ALA31 GLY32 HIS33 ILE34 GLU35 THR36 GLU37 GLY38 GLU39 LEU40 LYS41 ALA42 PHE43 LEU44 ASP45 ASN46 ILE47 LEU48 SER49 GLN50 ALA51 PRO52 SER53 ASP54 ARG55 ILE56 ILE57 LEU58 VAL59 LEU60 GLY61 ARG62 LEU63 ASN64 ASN65 GLN66 ASN67 GLN68 ILE69 GLN70 ARG71 MET72 GLU73 LYS74 VAL75 LEU76 ASN77 VAL78 SER79 TYR80 PRO81 SER82 ASP83 TRP84 LEU85 ASN86 GLN87 TYR88 SER89 GLN90 GLU91 ASN92 PHE93 ALA94 GLN95 HIS96 ASP97 PRO98 ILE99 MET100 ARG101 ILE102 HIS103 LEU104 GLY105 GLN106 GLY107 PRO108 VAL109 ILE110 TRP111 GLU112 GLU113 ARG114 PHE115 SER116 ARG117 ALA118 LYS119 GLY120 SER121 GLU122 GLU123 LYS124 ARG125 PHE126 ILE127 ALA128 GLU129 ALA130 SER131 SER132 ASN133 GLY134 MET135 GLY136 SER137 GLY138 ILE139 THR140 PHE141 SER142 ALA143 ALA144 SER145 ASP146 ARG147 ASN148 ASN149 VAL150 GLY151 SER152 ILE153 LEU154 SER155 ILE156 GLY157 GLY158 LYS159 GLU160 PRO161 GLY162 ARG163 ASN164 ALA165 ALA166 LEU167 VAL168 ALA169 MET170 LEU171 ASN172 CYS173 LEU174 THR175 PRO176 HIS177 LEU178 HIS179 GLN180 ALA181 ALA182 VAL183 ARG184 ILE185 ALA186 ASN187
Unit 3 MET7 ASN8 ALA9 ARG10 PRO11 LEU12 PRO13 ALA14 GLY15 LEU16 THR17 ALA18 SER19 GLN20 GLN21 TRP22 THR23 LEU24 LEU25 GLU26 TRP27 ILE28 HIS29 MET30 ALA31 GLY32 HIS33 ILE34 GLU35 THR36 GLU37 GLY38 GLU39 LEU40 LYS41 ALA42 PHE43 LEU44 ASP45 ASN46 ILE47 LEU48 SER49 GLN50 ALA51 PRO52 SER53 ASP54 ARG55 ILE56 ILE57 LEU58 VAL59 LEU60 GLY61 ARG62 LEU63 ASN64 ASN65 GLN66 ASN67 GLN68 ILE69 GLN70 ARG71 MET72 GLU73 LYS74 VAL75 LEU76 ASN77 VAL78 SER79 TYR80 PRO81 SER82 ASP83 TRP84 LEU85 ASN86 GLN87 TYR88 SER89 GLN90 GLU91 ASN92 PHE93 ALA94 GLN95 HIS96 ASP97 PRO98 ILE99 MET100 ARG101 ILE102 HIS103 LEU104 GLY105 GLN106 GLY107 PRO108 VAL109 ILE110 TRP111 GLU112 GLU113 ARG114 PHE115 SER116 ARG117 ALA118 LYS119 GLY120 SER121 GLU122 GLU123 LYS124 ARG125 PHE126 ILE127 ALA128 GLU129 ALA130 SER131 SER132 ASN133 GLY134 MET135 GLY136 SER137 GLY138 ILE139 THR140 PHE141 SER142 ALA143 ALA144 SER145 ASP146 ARG147 ASN148 ASN149 VAL150 GLY151 SER152 ILE153 LEU154 SER155 ILE156 GLY157 GLY158 LYS159 GLU160 PRO161 GLY162 ARG163 ASN164 ALA165 ALA166 LEU167 VAL168 ALA169 MET170 LEU171 ASN172 CYS173 LEU174 THR175 PRO176 HIS177 LEU178 HIS179 GLN180 ALA181 ALA182 VAL183 ARG184 ILE185 ALA186 ASN187
Unit 4 GLY4 SER5 HIS6 MET7 ASN8 ALA9 ARG10 PRO11 LEU12 PRO13 ALA14 GLY15 LEU16 THR17 ALA18 SER19 GLN20 GLN21 TRP22 THR23 LEU24 LEU25 GLU26 TRP27 ILE28 HIS29 MET30 ALA31 GLY32 HIS33 ILE34 GLU35 THR36 GLU37 GLY38 GLU39 LEU40 LYS41 ALA42 PHE43 LEU44 ASP45 ASN46 ILE47 LEU48 SER49 GLN50 ALA51 PRO52 SER53 ASP54 ARG55 ILE56 ILE57 LEU58 VAL59 LEU60 GLY61 ARG62 LEU63 ASN64 ASN65 GLN66 ASN67 GLN68 ILE69 GLN70 ARG71 MET72 GLU73 LYS74 VAL75 LEU76 ASN77 VAL78 SER79 TYR80 PRO81 SER82 ASP83 TRP84 LEU85 ASN86 GLN87 TYR88 SER89 GLN90 GLU91 ASN92 PHE93 ALA94 GLN95 HIS96 ASP97 PRO98 ILE99 MET100 ARG101 ILE102 HIS103 LEU104 GLY105 GLN106 GLY107 PRO108 VAL109 ILE110 TRP111 GLU112 GLU113 ARG114 PHE115 SER116 ARG117 ALA118 LYS119 GLY120 SER121 GLU122 GLU123 LYS124 ARG125 PHE126 ILE127 ALA128 GLU129 ALA130 SER131 SER132 ASN133 GLY134 MET135 GLY136 SER137 GLY138 ILE139 THR140 PHE141 SER142 ALA143 ALA144 SER145 ASP146 ARG147 ASN148 ASN149 VAL150 GLY151 SER152 ILE153 LEU154 SER155 ILE156 GLY157 GLY158 LYS159 GLU160 PRO161 GLY162 ARG163 ASN164 ALA165 ALA166 LEU167 VAL168 ALA169 MET170 LEU171 ASN172 CYS173 LEU174 THR175 PRO176 HIS177 LEU178 HIS179 GLN180 ALA181 ALA182 VAL183 ARG184 ILE185 ALA186 ASN187
Ligands
Unit 5 HL01
Unit 6 HL02
Unit 7 HL03
Unit 8 HL0188
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany