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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURES AND FUNCTIONAL ANALYSIS OF MURINE NOROVIR DEPENDENT RNA POLYMERASE
Keywords RNA POLYMERASE, VIRAL REPLICATION ENZYME, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3QID     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA DEPENDENT RNA POLYMERASE  A 492 3901 0
2  Protein   RNA DEPENDENT RNA POLYMERASE  B 492 3901 0
3  Protein   RNA DEPENDENT RNA POLYMERASE  C 492 3901 0
4  Ligand   RNA DEPENDENT RNA POLYMERASE  A 16 0 79
5  Ligand   RNA DEPENDENT RNA POLYMERASE  B 14 0 70
6  Ligand   RNA DEPENDENT RNA POLYMERASE  C 11 0 54
7 Water     454 0 454
total       1971 11703 657
Proteins
Unit 1 ARG7 PRO8 SER9 GLY10 THR11 TYR12 ALA13 GLY14 LEU15 PRO16 ILE17 ALA18 ASP19 TYR20 GLY21 ASP22 ALA23 PRO24 PRO25 LEU26 SER27 THR28 LYS29 THR30 MET31 PHE32 TRP33 ARG34 THR35 SER36 PRO37 GLU38 LYS39 LEU40 PRO41 PRO42 GLY43 ALA44 TRP45 GLU46 PRO47 ALA48 TYR49 LEU50 GLY51 SER52 LYS53 ASP54 GLU55 ARG56 VAL57 ASP58 GLY59 PRO60 SER61 LEU62 GLN63 GLN64 VAL65 MET66 ARG67 ASP68 GLN69 LEU70 LYS71 PRO72 TYR73 SER74 GLU75 PRO76 ARG77 GLY78 LEU79 LEU80 PRO81 PRO82 GLN83 GLU84 ILE85 LEU86 ASP87 ALA88 VAL89 CYS90 ASP91 ALA92 ILE93 GLU94 ASN95 ARG96 LEU97 GLU98 ASN99 THR100 LEU101 GLU102 PRO103 GLN104 LYS105 PRO106 TRP107 THR108 PHE109 LYS110 LYS111 ALA112 CYS113 GLU114 SER115 LEU116 ASP117 LYS118 ASN119 THR120 SER121 SER122 GLY123 TYR124 PRO125 TYR126 HIS127 LYS128 GLN129 LYS130 SER131 LYS132 ASP133 TRP134 THR135 GLY136 SER137 ALA138 PHE139 ILE140 GLY141 ASP142 LEU143 GLY144 ASP145 GLN146 ALA147 THR148 HIS149 ALA150 ASN151 ASN152 MET153 TYR154 GLU155 MET156 GLY157 LYS158 SER159 MET160 ARG161 PRO162 ILE163 TYR164 THR165 ALA166 ALA167 LEU168 LYS169 ASP170 GLU171 LEU172 VAL173 LYS174 PRO175 ASP176 LYS177 ILE178 TYR179 GLY180 LYS181 ILE182 LYS183 LYS184 ARG185 LEU186 LEU187 TRP188 GLY189 SER190 ASP191 LEU192 GLY193 THR194 MET195 ILE196 ARG197 ALA198 ALA199 ARG200 ALA201 PHE202 GLY203 PRO204 PHE205 CYS206 ASP207 ALA208 LEU209 LYS210 GLU211 THR212 CYS213 ILE214 PHE215 ASN216 PRO217 ILE218 ARG219 VAL220 GLY221 MET222 SER223 MET224 ASN225 GLU226 ASP227 GLY228 PRO229 PHE230 ILE231 PHE232 ALA233 ARG234 HIS235 ALA236 ASN237 PHE238 ARG239 TYR240 HIS241 MET242 ASP243 ALA244 ASP245 TYR246 THR247 ARG248 TRP249 ASP250 SER251 THR252 GLN253 GLN254 ARG255 ALA256 ILE257 LEU258 LYS259 ARG260 ALA261 GLY262 ASP263 ILE264 MET265 VAL266 ARG267 LEU268 SER269 PRO270 GLU271 PRO272 ASP273 LEU274 ALA275 ARG276 VAL277 VAL278 MET279 ASP280 ASP281 LEU282 LEU283 ALA284 PRO285 SER286 LEU287 LEU288 ASP289 VAL290 GLY291 ASP292 TYR293 LYS294 ILE295 VAL296 VAL297 GLU298 GLU299 GLY300 LEU301 PRO302 SER303 GLY304 CYS305 PRO306 CYS307 THR308 THR309 GLN310 LEU311 ASN312 SER313 LEU314 ALA315 HIS316 TRP317 ILE318 LEU319 THR320 LEU321 CYS322 ALA323 MET324 VAL325 GLU326 VAL327 THR328 ARG329 VAL330 ASP331 PRO332 ASP333 ILE334 VAL335 MET336 GLN337 GLU338 SER339 GLU340 PHE341 SER342 PHE343 TYR344 GLY345 ASP346 ASP347 GLU348 VAL349 VAL350 SER351 THR352 ASN353 LEU354 GLU355 LEU356 ASP357 MET358 VAL359 LYS360 TYR361 THR362 MET363 ALA364 LEU365 ARG366 ARG367 TYR368 GLY369 LEU370 LEU371 PRO372 THR373 ARG374 ALA375 ASP376 LYS377 GLU378 GLU379 GLY380 PRO381 LEU382 GLU383 ARG384 ARG385 GLN386 THR387 LEU388 GLN389 GLY390 ILE391 SER392 PHE393 LEU394 ARG395 ARG396 ALA397 ILE398 VAL399 GLY400 ASP401 GLN402 PHE403 GLY404 TRP405 TYR406 GLY407 ARG408 LEU409 ASP410 ARG411 ALA412 SER413 ILE414 ASP415 ARG416 GLN417 LEU418 LEU419 TRP420 THR421 LYS422 GLY423 PRO424 ASN425 HIS426 GLN427 ASN428 PRO429 PHE430 GLU431 THR432 LEU433 PRO434 GLY435 HIS436 ALA437 GLN438 ARG439 PRO440 SER441 GLN442 LEU443 MET444 ALA445 LEU446 LEU447 GLY448 GLU449 ALA450 ALA451 MET452 HIS453 GLY454 GLU455 LYS456 TYR457 TYR458 ARG459 THR460 VAL461 ALA462 SER463 ARG464 VAL465 SER466 LYS467 GLU468 ALA469 ALA470 GLN471 SER472 GLY473 ILE474 GLU475 MET476 VAL477 VAL478 PRO479 ARG480 HIS481 ARG482 SER483 VAL484 LEU485 ARG486 TRP487 VAL488 ARG489 PHE490 GLY491 THR492 MET493 ASP494 ALA495 GLU496 THR497 PRO498
Unit 2 ARG7 PRO8 SER9 GLY10 THR11 TYR12 ALA13 GLY14 LEU15 PRO16 ILE17 ALA18 ASP19 TYR20 GLY21 ASP22 ALA23 PRO24 PRO25 LEU26 SER27 THR28 LYS29 THR30 MET31 PHE32 TRP33 ARG34 THR35 SER36 PRO37 GLU38 LYS39 LEU40 PRO41 PRO42 GLY43 ALA44 TRP45 GLU46 PRO47 ALA48 TYR49 LEU50 GLY51 SER52 LYS53 ASP54 GLU55 ARG56 VAL57 ASP58 GLY59 PRO60 SER61 LEU62 GLN63 GLN64 VAL65 MET66 ARG67 ASP68 GLN69 LEU70 LYS71 PRO72 TYR73 SER74 GLU75 PRO76 ARG77 GLY78 LEU79 LEU80 PRO81 PRO82 GLN83 GLU84 ILE85 LEU86 ASP87 ALA88 VAL89 CYS90 ASP91 ALA92 ILE93 GLU94 ASN95 ARG96 LEU97 GLU98 ASN99 THR100 LEU101 GLU102 PRO103 GLN104 LYS105 PRO106 TRP107 THR108 PHE109 LYS110 LYS111 ALA112 CYS113 GLU114 SER115 LEU116 ASP117 LYS118 ASN119 THR120 SER121 SER122 GLY123 TYR124 PRO125 TYR126 HIS127 LYS128 GLN129 LYS130 SER131 LYS132 ASP133 TRP134 THR135 GLY136 SER137 ALA138 PHE139 ILE140 GLY141 ASP142 LEU143 GLY144 ASP145 GLN146 ALA147 THR148 HIS149 ALA150 ASN151 ASN152 MET153 TYR154 GLU155 MET156 GLY157 LYS158 SER159 MET160 ARG161 PRO162 ILE163 TYR164 THR165 ALA166 ALA167 LEU168 LYS169 ASP170 GLU171 LEU172 VAL173 LYS174 PRO175 ASP176 LYS177 ILE178 TYR179 GLY180 LYS181 ILE182 LYS183 LYS184 ARG185 LEU186 LEU187 TRP188 GLY189 SER190 ASP191 LEU192 GLY193 THR194 MET195 ILE196 ARG197 ALA198 ALA199 ARG200 ALA201 PHE202 GLY203 PRO204 PHE205 CYS206 ASP207 ALA208 LEU209 LYS210 GLU211 THR212 CYS213 ILE214 PHE215 ASN216 PRO217 ILE218 ARG219 VAL220 GLY221 MET222 SER223 MET224 ASN225 GLU226 ASP227 GLY228 PRO229 PHE230 ILE231 PHE232 ALA233 ARG234 HIS235 ALA236 ASN237 PHE238 ARG239 TYR240 HIS241 MET242 ASP243 ALA244 ASP245 TYR246 THR247 ARG248 TRP249 ASP250 SER251 THR252 GLN253 GLN254 ARG255 ALA256 ILE257 LEU258 LYS259 ARG260 ALA261 GLY262 ASP263 ILE264 MET265 VAL266 ARG267 LEU268 SER269 PRO270 GLU271 PRO272 ASP273 LEU274 ALA275 ARG276 VAL277 VAL278 MET279 ASP280 ASP281 LEU282 LEU283 ALA284 PRO285 SER286 LEU287 LEU288 ASP289 VAL290 GLY291 ASP292 TYR293 LYS294 ILE295 VAL296 VAL297 GLU298 GLU299 GLY300 LEU301 PRO302 SER303 GLY304 CYS305 PRO306 CYS307 THR308 THR309 GLN310 LEU311 ASN312 SER313 LEU314 ALA315 HIS316 TRP317 ILE318 LEU319 THR320 LEU321 CYS322 ALA323 MET324 VAL325 GLU326 VAL327 THR328 ARG329 VAL330 ASP331 PRO332 ASP333 ILE334 VAL335 MET336 GLN337 GLU338 SER339 GLU340 PHE341 SER342 PHE343 TYR344 GLY345 ASP346 ASP347 GLU348 VAL349 VAL350 SER351 THR352 ASN353 LEU354 GLU355 LEU356 ASP357 MET358 VAL359 LYS360 TYR361 THR362 MET363 ALA364 LEU365 ARG366 ARG367 TYR368 GLY369 LEU370 LEU371 PRO372 THR373 ARG374 ALA375 ASP376 LYS377 GLU378 GLU379 GLY380 PRO381 LEU382 GLU383 ARG384 ARG385 GLN386 THR387 LEU388 GLN389 GLY390 ILE391 SER392 PHE393 LEU394 ARG395 ARG396 ALA397 ILE398 VAL399 GLY400 ASP401 GLN402 PHE403 GLY404 TRP405 TYR406 GLY407 ARG408 LEU409 ASP410 ARG411 ALA412 SER413 ILE414 ASP415 ARG416 GLN417 LEU418 LEU419 TRP420 THR421 LYS422 GLY423 PRO424 ASN425 HIS426 GLN427 ASN428 PRO429 PHE430 GLU431 THR432 LEU433 PRO434 GLY435 HIS436 ALA437 GLN438 ARG439 PRO440 SER441 GLN442 LEU443 MET444 ALA445 LEU446 LEU447 GLY448 GLU449 ALA450 ALA451 MET452 HIS453 GLY454 GLU455 LYS456 TYR457 TYR458 ARG459 THR460 VAL461 ALA462 SER463 ARG464 VAL465 SER466 LYS467 GLU468 ALA469 ALA470 GLN471 SER472 GLY473 ILE474 GLU475 MET476 VAL477 VAL478 PRO479 ARG480 HIS481 ARG482 SER483 VAL484 LEU485 ARG486 TRP487 VAL488 ARG489 PHE490 GLY491 THR492 MET493 ASP494 ALA495 GLU496 THR497 PRO498
Unit 3 ARG7 PRO8 SER9 GLY10 THR11 TYR12 ALA13 GLY14 LEU15 PRO16 ILE17 ALA18 ASP19 TYR20 GLY21 ASP22 ALA23 PRO24 PRO25 LEU26 SER27 THR28 LYS29 THR30 MET31 PHE32 TRP33 ARG34 THR35 SER36 PRO37 GLU38 LYS39 LEU40 PRO41 PRO42 GLY43 ALA44 TRP45 GLU46 PRO47 ALA48 TYR49 LEU50 GLY51 SER52 LYS53 ASP54 GLU55 ARG56 VAL57 ASP58 GLY59 PRO60 SER61 LEU62 GLN63 GLN64 VAL65 MET66 ARG67 ASP68 GLN69 LEU70 LYS71 PRO72 TYR73 SER74 GLU75 PRO76 ARG77 GLY78 LEU79 LEU80 PRO81 PRO82 GLN83 GLU84 ILE85 LEU86 ASP87 ALA88 VAL89 CYS90 ASP91 ALA92 ILE93 GLU94 ASN95 ARG96 LEU97 GLU98 ASN99 THR100 LEU101 GLU102 PRO103 GLN104 LYS105 PRO106 TRP107 THR108 PHE109 LYS110 LYS111 ALA112 CYS113 GLU114 SER115 LEU116 ASP117 LYS118 ASN119 THR120 SER121 SER122 GLY123 TYR124 PRO125 TYR126 HIS127 LYS128 GLN129 LYS130 SER131 LYS132 ASP133 TRP134 THR135 GLY136 SER137 ALA138 PHE139 ILE140 GLY141 ASP142 LEU143 GLY144 ASP145 GLN146 ALA147 THR148 HIS149 ALA150 ASN151 ASN152 MET153 TYR154 GLU155 MET156 GLY157 LYS158 SER159 MET160 ARG161 PRO162 ILE163 TYR164 THR165 ALA166 ALA167 LEU168 LYS169 ASP170 GLU171 LEU172 VAL173 LYS174 PRO175 ASP176 LYS177 ILE178 TYR179 GLY180 LYS181 ILE182 LYS183 LYS184 ARG185 LEU186 LEU187 TRP188 GLY189 SER190 ASP191 LEU192 GLY193 THR194 MET195 ILE196 ARG197 ALA198 ALA199 ARG200 ALA201 PHE202 GLY203 PRO204 PHE205 CYS206 ASP207 ALA208 LEU209 LYS210 GLU211 THR212 CYS213 ILE214 PHE215 ASN216 PRO217 ILE218 ARG219 VAL220 GLY221 MET222 SER223 MET224 ASN225 GLU226 ASP227 GLY228 PRO229 PHE230 ILE231 PHE232 ALA233 ARG234 HIS235 ALA236 ASN237 PHE238 ARG239 TYR240 HIS241 MET242 ASP243 ALA244 ASP245 TYR246 THR247 ARG248 TRP249 ASP250 SER251 THR252 GLN253 GLN254 ARG255 ALA256 ILE257 LEU258 LYS259 ARG260 ALA261 GLY262 ASP263 ILE264 MET265 VAL266 ARG267 LEU268 SER269 PRO270 GLU271 PRO272 ASP273 LEU274 ALA275 ARG276 VAL277 VAL278 MET279 ASP280 ASP281 LEU282 LEU283 ALA284 PRO285 SER286 LEU287 LEU288 ASP289 VAL290 GLY291 ASP292 TYR293 LYS294 ILE295 VAL296 VAL297 GLU298 GLU299 GLY300 LEU301 PRO302 SER303 GLY304 CYS305 PRO306 CYS307 THR308 THR309 GLN310 LEU311 ASN312 SER313 LEU314 ALA315 HIS316 TRP317 ILE318 LEU319 THR320 LEU321 CYS322 ALA323 MET324 VAL325 GLU326 VAL327 THR328 ARG329 VAL330 ASP331 PRO332 ASP333 ILE334 VAL335 MET336 GLN337 GLU338 SER339 GLU340 PHE341 SER342 PHE343 TYR344 GLY345 ASP346 ASP347 GLU348 VAL349 VAL350 SER351 THR352 ASN353 LEU354 GLU355 LEU356 ASP357 MET358 VAL359 LYS360 TYR361 THR362 MET363 ALA364 LEU365 ARG366 ARG367 TYR368 GLY369 LEU370 LEU371 PRO372 THR373 ARG374 ALA375 ASP376 LYS377 GLU378 GLU379 GLY380 PRO381 LEU382 GLU383 ARG384 ARG385 GLN386 THR387 LEU388 GLN389 GLY390 ILE391 SER392 PHE393 LEU394 ARG395 ARG396 ALA397 ILE398 VAL399 GLY400 ASP401 GLN402 PHE403 GLY404 TRP405 TYR406 GLY407 ARG408 LEU409 ASP410 ARG411 ALA412 SER413 ILE414 ASP415 ARG416 GLN417 LEU418 LEU419 TRP420 THR421 LYS422 GLY423 PRO424 ASN425 HIS426 GLN427 ASN428 PRO429 PHE430 GLU431 THR432 LEU433 PRO434 GLY435 HIS436 ALA437 GLN438 ARG439 PRO440 SER441 GLN442 LEU443 MET444 ALA445 LEU446 LEU447 GLY448 GLU449 ALA450 ALA451 MET452 HIS453 GLY454 GLU455 LYS456 TYR457 TYR458 ARG459 THR460 VAL461 ALA462 SER463 ARG464 VAL465 SER466 LYS467 GLU468 ALA469 ALA470 GLN471 SER472 GLY473 ILE474 GLU475 MET476 VAL477 VAL478 PRO479 ARG480 HIS481 ARG482 SER483 VAL484 LEU485 ARG486 TRP487 VAL488 ARG489 PHE490 GLY491 THR492 MET493 ASP494 ALA495 GLU496 THR497 PRO498
Ligands
Unit 4 SO41 SO4521 SO4522 SO4523 SO4524 SO4525 SO4526 SO4527 SO4528 SO4529 SO4530 SO4531 MN3532 GOL533 GOL534 GOL535
Unit 5 GOL2 SO43 SO4521 SO4522 SO4523 SO4524 SO4525 SO4526 SO4527 SO4528 MN3529 GOL530 GOL531 GOL532
Unit 6 GOL1 SO42 SO4521 SO4522 SO4523 SO4524 SO4525 SO4526 MN3527 GOL528 GOL529
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany