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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL, THERMODYNAMIC AND KINETIC ANALYSIS OF THE PICOMO BINDING AFFINITY INTERACTION OF THE BETA-LACTAMASE INHIBITO II (BLIP-II) WITH CLASS A BETA-LACTAMASES
Keywords ENZYME-INHIBITOR COMPLEX, BSGC, BETA-PROPELLER, BETA-LACTAMA PROTEIN:PROTEIN INTERACTION, HYDROLASE INHIBITOR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3QI0     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BETA-LACTAMASE INHIBITORY PROTEIN II  A 268 1904 0
2  Protein   BETA-LACTAMASE INHIBITORY PROTEIN II  B 268 1904 0
3  Protein   BETA-LACTAMASE INHIBITORY PROTEIN II  C 269 1911 0
4  Protein   BETA-LACTAMASE INHIBITORY PROTEIN II  D 269 1911 0
5  Protein   BETA-LACTAMASE INHIBITORY PROTEIN II  E 269 1911 0
6  Protein   BETA-LACTAMASE INHIBITORY PROTEIN II  F 268 1902 0
7  Ligand   BETA-LACTAMASE INHIBITORY PROTEIN II  A 7 0 35
8  Ligand   BETA-LACTAMASE INHIBITORY PROTEIN II  B 8 0 40
9  Ligand   BETA-LACTAMASE INHIBITORY PROTEIN II  C 4 0 20
10  Ligand   BETA-LACTAMASE INHIBITORY PROTEIN II  D 6 0 30
11  Ligand   BETA-LACTAMASE INHIBITORY PROTEIN II  E 8 0 40
12  Ligand   BETA-LACTAMASE INHIBITORY PROTEIN II  F 2 0 10
13 Water     199 0 199
total       1845 11443 374
Proteins
Unit 1 SER43 VAL44 VAL45 ALA46 TRP47 GLY48 GLY49 ASN50 ASN51 ASP52 TRP53 GLY54 GLU55 ALA56 THR57 VAL58 PRO59 ALA60 GLU61 ALA62 GLN63 SER64 GLY65 VAL66 ASP67 ALA68 ILE69 ALA70 GLY71 GLY72 TYR73 PHE74 HIS75 GLY76 LEU77 ALA78 LEU79 LYS80 GLY81 GLY82 LYS83 VAL84 LEU85 GLY86 TRP87 GLY88 ALA89 ASN90 LEU91 ASN92 GLY93 GLN94 LEU95 THR96 MET97 PRO98 ALA99 ALA100 THR101 GLN102 SER103 GLY104 VAL105 ASP106 ALA107 ILE108 ALA109 ALA110 GLY111 ASN112 TYR113 HIS114 SER115 LEU116 ALA117 LEU118 LYS119 ASP120 GLY121 GLU122 VAL123 ILE124 ALA125 TRP126 GLY127 GLY128 ASN129 GLU130 ASP131 GLY132 GLN133 THR134 THR135 VAL136 PRO137 ALA138 GLU139 ALA140 ARG141 SER142 GLY143 VAL144 ASP145 ALA146 ILE147 ALA148 ALA149 GLY150 ALA151 TRP152 ALA153 SER154 TYR155 ALA156 LEU157 LYS158 ASP159 GLY160 LYS161 VAL162 ILE163 ALA164 TRP165 GLY166 ASP167 ASP168 SER169 ASP170 GLY171 GLN172 THR173 THR174 VAL175 PRO176 ALA177 GLU178 ALA179 GLN180 SER181 GLY182 VAL183 THR184 ALA185 LEU186 ASP187 GLY188 GLY189 VAL190 TYR191 THR192 ALA193 LEU194 ALA195 VAL196 LYS197 ASN198 GLY199 GLY200 VAL201 ILE202 ALA203 TRP204 GLY205 ASP206 ASN207 TYR208 PHE209 GLY210 GLN211 THR212 THR213 VAL214 PRO215 ALA216 GLU217 ALA218 GLN219 SER220 GLY221 VAL222 ASP223 ASP224 VAL225 ALA226 GLY227 GLY228 ILE229 PHE230 HIS231 SER232 LEU233 ALA234 LEU235 LYS236 ASP237 GLY238 LYS239 VAL240 ILE241 ALA242 TRP243 GLY244 ASP245 ASN246 ARG247 TYR248 LYS249 GLN250 THR251 THR252 VAL253 PRO254 THR255 GLU256 ALA257 LEU258 SER259 GLY260 VAL261 SER262 ALA263 ILE264 ALA265 SER266 GLY267 GLU268 TRP269 TYR270 SER271 LEU272 ALA273 LEU274 LYS275 ASN276 GLY277 LYS278 VAL279 ILE280 ALA281 TRP282 GLY283 SER284 SER285 ARG286 THR287 ALA288 PRO289 SER290 SER291 VAL292 GLN293 SER294 GLY295 VAL296 SER297 SER298 ILE299 GLU300 ALA301 GLY302 PRO303 ASN304 ALA305 ALA306 TYR307 ALA308 LEU309 LYS310
Unit 2 SER43 VAL44 VAL45 ALA46 TRP47 GLY48 GLY49 ASN50 ASN51 ASP52 TRP53 GLY54 GLU55 ALA56 THR57 VAL58 PRO59 ALA60 GLU61 ALA62 GLN63 SER64 GLY65 VAL66 ASP67 ALA68 ILE69 ALA70 GLY71 GLY72 TYR73 PHE74 HIS75 GLY76 LEU77 ALA78 LEU79 LYS80 GLY81 GLY82 LYS83 VAL84 LEU85 GLY86 TRP87 GLY88 ALA89 ASN90 LEU91 ASN92 GLY93 GLN94 LEU95 THR96 MET97 PRO98 ALA99 ALA100 THR101 GLN102 SER103 GLY104 VAL105 ASP106 ALA107 ILE108 ALA109 ALA110 GLY111 ASN112 TYR113 HIS114 SER115 LEU116 ALA117 LEU118 LYS119 ASP120 GLY121 GLU122 VAL123 ILE124 ALA125 TRP126 GLY127 GLY128 ASN129 GLU130 ASP131 GLY132 GLN133 THR134 THR135 VAL136 PRO137 ALA138 GLU139 ALA140 ARG141 SER142 GLY143 VAL144 ASP145 ALA146 ILE147 ALA148 ALA149 GLY150 ALA151 TRP152 ALA153 SER154 TYR155 ALA156 LEU157 LYS158 ASP159 GLY160 LYS161 VAL162 ILE163 ALA164 TRP165 GLY166 ASP167 ASP168 SER169 ASP170 GLY171 GLN172 THR173 THR174 VAL175 PRO176 ALA177 GLU178 ALA179 GLN180 SER181 GLY182 VAL183 THR184 ALA185 LEU186 ASP187 GLY188 GLY189 VAL190 TYR191 THR192 ALA193 LEU194 ALA195 VAL196 LYS197 ASN198 GLY199 GLY200 VAL201 ILE202 ALA203 TRP204 GLY205 ASP206 ASN207 TYR208 PHE209 GLY210 GLN211 THR212 THR213 VAL214 PRO215 ALA216 GLU217 ALA218 GLN219 SER220 GLY221 VAL222 ASP223 ASP224 VAL225 ALA226 GLY227 GLY228 ILE229 PHE230 HIS231 SER232 LEU233 ALA234 LEU235 LYS236 ASP237 GLY238 LYS239 VAL240 ILE241 ALA242 TRP243 GLY244 ASP245 ASN246 ARG247 TYR248 LYS249 GLN250 THR251 THR252 VAL253 PRO254 THR255 GLU256 ALA257 LEU258 SER259 GLY260 VAL261 SER262 ALA263 ILE264 ALA265 SER266 GLY267 GLU268 TRP269 TYR270 SER271 LEU272 ALA273 LEU274 LYS275 ASN276 GLY277 LYS278 VAL279 ILE280 ALA281 TRP282 GLY283 SER284 SER285 ARG286 THR287 ALA288 PRO289 SER290 SER291 VAL292 GLN293 SER294 GLY295 VAL296 SER297 SER298 ILE299 GLU300 ALA301 GLY302 PRO303 ASN304 ALA305 ALA306 TYR307 ALA308 LEU309 LYS310
Unit 3 THR42 SER43 VAL44 VAL45 ALA46 TRP47 GLY48 GLY49 ASN50 ASN51 ASP52 TRP53 GLY54 GLU55 ALA56 THR57 VAL58 PRO59 ALA60 GLU61 ALA62 GLN63 SER64 GLY65 VAL66 ASP67 ALA68 ILE69 ALA70 GLY71 GLY72 TYR73 PHE74 HIS75 GLY76 LEU77 ALA78 LEU79 LYS80 GLY81 GLY82 LYS83 VAL84 LEU85 GLY86 TRP87 GLY88 ALA89 ASN90 LEU91 ASN92 GLY93 GLN94 LEU95 THR96 MET97 PRO98 ALA99 ALA100 THR101 GLN102 SER103 GLY104 VAL105 ASP106 ALA107 ILE108 ALA109 ALA110 GLY111 ASN112 TYR113 HIS114 SER115 LEU116 ALA117 LEU118 LYS119 ASP120 GLY121 GLU122 VAL123 ILE124 ALA125 TRP126 GLY127 GLY128 ASN129 GLU130 ASP131 GLY132 GLN133 THR134 THR135 VAL136 PRO137 ALA138 GLU139 ALA140 ARG141 SER142 GLY143 VAL144 ASP145 ALA146 ILE147 ALA148 ALA149 GLY150 ALA151 TRP152 ALA153 SER154 TYR155 ALA156 LEU157 LYS158 ASP159 GLY160 LYS161 VAL162 ILE163 ALA164 TRP165 GLY166 ASP167 ASP168 SER169 ASP170 GLY171 GLN172 THR173 THR174 VAL175 PRO176 ALA177 GLU178 ALA179 GLN180 SER181 GLY182 VAL183 THR184 ALA185 LEU186 ASP187 GLY188 GLY189 VAL190 TYR191 THR192 ALA193 LEU194 ALA195 VAL196 LYS197 ASN198 GLY199 GLY200 VAL201 ILE202 ALA203 TRP204 GLY205 ASP206 ASN207 TYR208 PHE209 GLY210 GLN211 THR212 THR213 VAL214 PRO215 ALA216 GLU217 ALA218 GLN219 SER220 GLY221 VAL222 ASP223 ASP224 VAL225 ALA226 GLY227 GLY228 ILE229 PHE230 HIS231 SER232 LEU233 ALA234 LEU235 LYS236 ASP237 GLY238 LYS239 VAL240 ILE241 ALA242 TRP243 GLY244 ASP245 ASN246 ARG247 TYR248 LYS249 GLN250 THR251 THR252 VAL253 PRO254 THR255 GLU256 ALA257 LEU258 SER259 GLY260 VAL261 SER262 ALA263 ILE264 ALA265 SER266 GLY267 GLU268 TRP269 TYR270 SER271 LEU272 ALA273 LEU274 LYS275 ASN276 GLY277 LYS278 VAL279 ILE280 ALA281 TRP282 GLY283 SER284 SER285 ARG286 THR287 ALA288 PRO289 SER290 SER291 VAL292 GLN293 SER294 GLY295 VAL296 SER297 SER298 ILE299 GLU300 ALA301 GLY302 PRO303 ASN304 ALA305 ALA306 TYR307 ALA308 LEU309 LYS310
Unit 4 THR42 SER43 VAL44 VAL45 ALA46 TRP47 GLY48 GLY49 ASN50 ASN51 ASP52 TRP53 GLY54 GLU55 ALA56 THR57 VAL58 PRO59 ALA60 GLU61 ALA62 GLN63 SER64 GLY65 VAL66 ASP67 ALA68 ILE69 ALA70 GLY71 GLY72 TYR73 PHE74 HIS75 GLY76 LEU77 ALA78 LEU79 LYS80 GLY81 GLY82 LYS83 VAL84 LEU85 GLY86 TRP87 GLY88 ALA89 ASN90 LEU91 ASN92 GLY93 GLN94 LEU95 THR96 MET97 PRO98 ALA99 ALA100 THR101 GLN102 SER103 GLY104 VAL105 ASP106 ALA107 ILE108 ALA109 ALA110 GLY111 ASN112 TYR113 HIS114 SER115 LEU116 ALA117 LEU118 LYS119 ASP120 GLY121 GLU122 VAL123 ILE124 ALA125 TRP126 GLY127 GLY128 ASN129 GLU130 ASP131 GLY132 GLN133 THR134 THR135 VAL136 PRO137 ALA138 GLU139 ALA140 ARG141 SER142 GLY143 VAL144 ASP145 ALA146 ILE147 ALA148 ALA149 GLY150 ALA151 TRP152 ALA153 SER154 TYR155 ALA156 LEU157 LYS158 ASP159 GLY160 LYS161 VAL162 ILE163 ALA164 TRP165 GLY166 ASP167 ASP168 SER169 ASP170 GLY171 GLN172 THR173 THR174 VAL175 PRO176 ALA177 GLU178 ALA179 GLN180 SER181 GLY182 VAL183 THR184 ALA185 LEU186 ASP187 GLY188 GLY189 VAL190 TYR191 THR192 ALA193 LEU194 ALA195 VAL196 LYS197 ASN198 GLY199 GLY200 VAL201 ILE202 ALA203 TRP204 GLY205 ASP206 ASN207 TYR208 PHE209 GLY210 GLN211 THR212 THR213 VAL214 PRO215 ALA216 GLU217 ALA218 GLN219 SER220 GLY221 VAL222 ASP223 ASP224 VAL225 ALA226 GLY227 GLY228 ILE229 PHE230 HIS231 SER232 LEU233 ALA234 LEU235 LYS236 ASP237 GLY238 LYS239 VAL240 ILE241 ALA242 TRP243 GLY244 ASP245 ASN246 ARG247 TYR248 LYS249 GLN250 THR251 THR252 VAL253 PRO254 THR255 GLU256 ALA257 LEU258 SER259 GLY260 VAL261 SER262 ALA263 ILE264 ALA265 SER266 GLY267 GLU268 TRP269 TYR270 SER271 LEU272 ALA273 LEU274 LYS275 ASN276 GLY277 LYS278 VAL279 ILE280 ALA281 TRP282 GLY283 SER284 SER285 ARG286 THR287 ALA288 PRO289 SER290 SER291 VAL292 GLN293 SER294 GLY295 VAL296 SER297 SER298 ILE299 GLU300 ALA301 GLY302 PRO303 ASN304 ALA305 ALA306 TYR307 ALA308 LEU309 LYS310
Unit 5 THR42 SER43 VAL44 VAL45 ALA46 TRP47 GLY48 GLY49 ASN50 ASN51 ASP52 TRP53 GLY54 GLU55 ALA56 THR57 VAL58 PRO59 ALA60 GLU61 ALA62 GLN63 SER64 GLY65 VAL66 ASP67 ALA68 ILE69 ALA70 GLY71 GLY72 TYR73 PHE74 HIS75 GLY76 LEU77 ALA78 LEU79 LYS80 GLY81 GLY82 LYS83 VAL84 LEU85 GLY86 TRP87 GLY88 ALA89 ASN90 LEU91 ASN92 GLY93 GLN94 LEU95 THR96 MET97 PRO98 ALA99 ALA100 THR101 GLN102 SER103 GLY104 VAL105 ASP106 ALA107 ILE108 ALA109 ALA110 GLY111 ASN112 TYR113 HIS114 SER115 LEU116 ALA117 LEU118 LYS119 ASP120 GLY121 GLU122 VAL123 ILE124 ALA125 TRP126 GLY127 GLY128 ASN129 GLU130 ASP131 GLY132 GLN133 THR134 THR135 VAL136 PRO137 ALA138 GLU139 ALA140 ARG141 SER142 GLY143 VAL144 ASP145 ALA146 ILE147 ALA148 ALA149 GLY150 ALA151 TRP152 ALA153 SER154 TYR155 ALA156 LEU157 LYS158 ASP159 GLY160 LYS161 VAL162 ILE163 ALA164 TRP165 GLY166 ASP167 ASP168 SER169 ASP170 GLY171 GLN172 THR173 THR174 VAL175 PRO176 ALA177 GLU178 ALA179 GLN180 SER181 GLY182 VAL183 THR184 ALA185 LEU186 ASP187 GLY188 GLY189 VAL190 TYR191 THR192 ALA193 LEU194 ALA195 VAL196 LYS197 ASN198 GLY199 GLY200 VAL201 ILE202 ALA203 TRP204 GLY205 ASP206 ASN207 TYR208 PHE209 GLY210 GLN211 THR212 THR213 VAL214 PRO215 ALA216 GLU217 ALA218 GLN219 SER220 GLY221 VAL222 ASP223 ASP224 VAL225 ALA226 GLY227 GLY228 ILE229 PHE230 HIS231 SER232 LEU233 ALA234 LEU235 LYS236 ASP237 GLY238 LYS239 VAL240 ILE241 ALA242 TRP243 GLY244 ASP245 ASN246 ARG247 TYR248 LYS249 GLN250 THR251 THR252 VAL253 PRO254 THR255 GLU256 ALA257 LEU258 SER259 GLY260 VAL261 SER262 ALA263 ILE264 ALA265 SER266 GLY267 GLU268 TRP269 TYR270 SER271 LEU272 ALA273 LEU274 LYS275 ASN276 GLY277 LYS278 VAL279 ILE280 ALA281 TRP282 GLY283 SER284 SER285 ARG286 THR287 ALA288 PRO289 SER290 SER291 VAL292 GLN293 SER294 GLY295 VAL296 SER297 SER298 ILE299 GLU300 ALA301 GLY302 PRO303 ASN304 ALA305 ALA306 TYR307 ALA308 LEU309 LYS310
Unit 6 THR42 SER43 VAL44 VAL45 ALA46 TRP47 GLY48 GLY49 ASN50 ASN51 ASP52 TRP53 GLY54 GLU55 ALA56 THR57 VAL58 PRO59 ALA60 GLU61 ALA62 GLN63 SER64 GLY65 VAL66 ASP67 ALA68 ILE69 ALA70 GLY71 GLY72 TYR73 PHE74 HIS75 GLY76 LEU77 ALA78 LEU79 LYS80 GLY81 GLY82 LYS83 VAL84 LEU85 GLY86 TRP87 GLY88 ALA89 ASN90 LEU91 ASN92 GLY93 GLN94 LEU95 THR96 MET97 PRO98 ALA99 ALA100 THR101 GLN102 SER103 GLY104 VAL105 ASP106 ALA107 ILE108 ALA109 ALA110 GLY111 ASN112 TYR113 HIS114 SER115 LEU116 ALA117 LEU118 LYS119 ASP120 GLY121 GLU122 VAL123 ILE124 ALA125 TRP126 GLY127 GLY128 ASN129 GLU130 ASP131 GLY132 GLN133 THR134 THR135 VAL136 PRO137 ALA138 GLU139 ALA140 ARG141 SER142 GLY143 VAL144 ASP145 ALA146 ILE147 ALA148 ALA149 GLY150 ALA151 TRP152 ALA153 SER154 TYR155 ALA156 LEU157 LYS158 ASP159 GLY160 LYS161 VAL162 ILE163 ALA164 TRP165 GLY166 ASP167 ASP168 SER169 ASP170 GLY171 GLN172 THR173 THR174 VAL175 PRO176 ALA177 GLU178 ALA179 GLN180 SER181 GLY182 VAL183 THR184 ALA185 LEU186 ASP187 GLY188 GLY189 VAL190 TYR191 THR192 ALA193 LEU194 ALA195 VAL196 LYS197 ASN198 GLY199 GLY200 VAL201 ILE202 ALA203 TRP204 GLY205 ASP206 ASN207 TYR208 PHE209 GLY210 GLN211 THR212 THR213 VAL214 PRO215 ALA216 GLU217 ALA218 GLN219 SER220 GLY221 VAL222 ASP223 ASP224 VAL225 ALA226 GLY227 GLY228 ILE229 PHE230 HIS231 SER232 LEU233 ALA234 LEU235 LYS236 ASP237 GLY238 LYS239 VAL240 ILE241 ALA242 TRP243 GLY244 ASP245 ASN246 ARG247 TYR248 LYS249 GLN250 THR251 THR252 VAL253 PRO254 THR255 GLU256 ALA257 LEU258 SER259 GLY260 VAL261 SER262 ALA263 ILE264 ALA265 SER266 GLY267 GLU268 TRP269 TYR270 SER271 LEU272 ALA273 LEU274 LYS275 ASN276 GLY277 LYS278 VAL279 ILE280 ALA281 TRP282 GLY283 SER284 SER285 ARG286 THR287 ALA288 PRO289 SER290 SER291 VAL292 GLN293 SER294 GLY295 VAL296 SER297 SER298 ILE299 GLU300 ALA301 GLY302 PRO303 ASN304 ALA305 ALA306 TYR307 ALA308 LEU309
Ligands
Unit 7 SO41 SO44 SO411 SO415 SO423 SO425 SO426
Unit 8 SO42 SO43 SO47 SO410 SO419 SO421 SO424 SO431
Unit 9 SO43 SO46 SO48 SO412
Unit 10 SO41 SO49 SO413 SO414 SO416 SO427
Unit 11 SO42 SO45 SO417 SO418 SO420 SO422 SO428 SO429
Unit 12 SO430 SO432
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany