3QDG - Sequence, Chains, Asymmetric and Biological Units

• Title: THE COMPLEX BETWEEN TCR DMF5 AND HUMAN CLASS I MHC HLA-A2 WI BOUND MART-1(26-35)(A27L) PEPTIDE
• Keywords: MART-1 PEPTIDE, DECAPEPTIDE, MHC CLASS I, HLA-A2, TCR DMF5, REACTIVITY, MELANOMA, CANCER, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3QDG	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	275	2247	0
2	Protein	BETA-2-MICROGLOBULIN	B	100	837	0
3	Protein	MART-1 (26-35) PEPTIDE	C	10	69	0
4	Protein	DMF5 ALPHA CHAIN	D	199	1546	0
5	Protein	DMF5 BETA CHAIN	E	242	1897	0
6	Water			24	0	24
total				850	6596	24

Proteins

Unit 1	GLY 1 SER 2 HIS 3 SER 4 MET 5 ARG 6 TYR 7 PHE 8 PHE 9 THR 10 SER 11 VAL 12 SER 13 ARG 14 PRO 15 GLY 16 ARG 17 GLY 18 GLU 19 PRO 20 ARG 21 PHE 22 ILE 23 ALA 24 VAL 25 GLY 26 TYR 27 VAL 28 ASP 29 ASP 30 THR 31 GLN 32 PHE 33 VAL 34 ARG 35 PHE 36 ASP 37 SER 38 ASP 39 ALA 40 ALA 41 SER 42 GLN 43 ARG 44 MET 45 GLU 46 PRO 47 ARG 48 ALA 49 PRO 50 TRP 51 ILE 52 GLU 53 GLN 54 GLU 55 GLY 56 PRO 57 GLU 58 TYR 59 TRP 60 ASP 61 GLY 62 GLU 63 THR 64 ARG 65 LYS 66 VAL 67 LYS 68 ALA 69 HIS 70 SER 71 GLN 72 THR 73 HIS 74 ARG 75 VAL 76 ASP 77 LEU 78 GLY 79 THR 80 LEU 81 ARG 82 GLY 83 TYR 84 TYR 85 ASN 86 GLN 87 SER 88 GLU 89 ALA 90 GLY 91 SER 92 HIS 93 THR 94 VAL 95 GLN 96 ARG 97 MET 98 TYR 99 GLY 100 CYS 101 ASP 102 VAL 103 GLY 104 SER 105 ASP 106 TRP 107 ARG 108 PHE 109 LEU 110 ARG 111 GLY 112 TYR 113 HIS 114 GLN 115 TYR 116 ALA 117 TYR 118 ASP 119 GLY 120 LYS 121 ASP 122 TYR 123 ILE 124 ALA 125 LEU 126 LYS 127 GLU 128 ASP 129 LEU 130 ARG 131 SER 132 TRP 133 THR 134 ALA 135 ALA 136 ASP 137 MET 138 ALA 139 ALA 140 GLN 141 THR 142 THR 143 LYS 144 HIS 145 LYS 146 TRP 147 GLU 148 ALA 149 ALA 150 HIS 151 VAL 152 ALA 153 GLU 154 GLN 155 LEU 156 ARG 157 ALA 158 TYR 159 LEU 160 GLU 161 GLY 162 THR 163 CYS 164 VAL 165 GLU 166 TRP 167 LEU 168 ARG 169 ARG 170 TYR 171 LEU 172 GLU 173 ASN 174 GLY 175 LYS 176 GLU 177 THR 178 LEU 179 GLN 180 ARG 181 THR 182 ASP 183 ALA 184 PRO 185 LYS 186 THR 187 HIS 188 MET 189 THR 190 HIS 191 HIS 192 ALA 193 VAL 194 SER 195 ASP 196 HIS 197 GLU 198 ALA 199 THR 200 LEU 201 ARG 202 CYS 203 TRP 204 ALA 205 LEU 206 SER 207 PHE 208 TYR 209 PRO 210 ALA 211 GLU 212 ILE 213 THR 214 LEU 215 THR 216 TRP 217 GLN 218 ARG 219 ASP 220 GLY 221 GLU 222 ASP 223 GLN 224 THR 225 GLN 226 ASP 227 THR 228 GLU 229 LEU 230 VAL 231 GLU 232 THR 233 ARG 234 PRO 235 ALA 236 GLY 237 ASP 238 GLY 239 THR 240 PHE 241 GLN 242 LYS 243 TRP 244 ALA 245 ALA 246 VAL 247 VAL 248 VAL 249 PRO 250 SER 251 GLY 252 GLN 253 GLU 254 GLN 255 ARG 256 TYR 257 THR 258 CYS 259 HIS 260 VAL 261 GLN 262 HIS 263 GLU 264 GLY 265 LEU 266 PRO 267 LYS 268 PRO 269 LEU 270 THR 271 LEU 272 ARG 273 TRP 274 GLU 275
Unit 2	MET 0 ILE 1 GLN 2 ARG 3 THR 4 PRO 5 LYS 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 ALA 15 GLU 16 ASN 17 GLY 18 LYS 19 SER 20 ASN 21 PHE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 SER 28 GLY 29 PHE 30 HIS 31 PRO 32 SER 33 ASP 34 ILE 35 GLU 36 VAL 37 ASP 38 LEU 39 LEU 40 LYS 41 ASN 42 GLY 43 GLU 44 ARG 45 ILE 46 GLU 47 LYS 48 VAL 49 GLU 50 HIS 51 SER 52 ASP 53 LEU 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 LEU 64 LEU 65 TYR 66 TYR 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 LYS 75 ASP 76 GLU 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 ASN 83 HIS 84 VAL 85 THR 86 LEU 87 SER 88 GLN 89 PRO 90 LYS 91 ILE 92 VAL 93 LYS 94 TRP 95 ASP 96 ARG 97 ASP 98 MET 99
Unit 3	GLU 1 LEU 2 ALA 3 GLY 4 ILE 5 GLY 6 ILE 7 LEU 8 THR 9 VAL 10
Unit 4	LYS 1 GLU 2 VAL 3 GLU 4 GLN 5 ASN 6 SER 7 GLY 8 PRO 9 LEU 10 SER 11 VAL 12 PRO 13 GLU 14 GLY 15 ALA 16 ILE 17 ALA 18 SER 19 LEU 20 ASN 21 CYS 22 THR 23 TYR 24 SER 25 ASP 26 ARG 27 GLY 28 SER 29 GLN 30 SER 31 PHE 32 PHE 33 TRP 34 TYR 35 ARG 36 GLN 37 TYR 38 SER 39 GLY 40 LYS 41 SER 42 PRO 43 GLU 44 LEU 45 ILE 46 MET 47 PHE 48 ILE 49 TYR 50 SER 51 ASN 52 GLY 53 ASP 54 LYS 55 GLU 56 ASP 57 GLY 58 ARG 59 PHE 60 THR 61 ALA 62 GLN 63 LEU 64 ASN 65 LYS 66 ALA 67 SER 68 GLN 69 TYR 70 VAL 71 SER 72 LEU 73 LEU 74 ILE 75 ARG 76 ASP 77 SER 78 GLN 79 PRO 80 SER 81 ASP 82 SER 83 ALA 84 THR 85 TYR 86 LEU 87 CYS 88 ALA 89 VAL 90 ASN 91 PHE 92 GLY 93 GLY 94 GLY 95 LYS 96 LEU 97 ILE 98 PHE 99 GLY 100 GLN 101 GLY 102 THR 103 GLU 104 LEU 105 SER 106 VAL 107 LYS 108 PRO 109 ASN 110 ILE 111 GLN 112 ASN 113 PRO 114 ASP 115 PRO 116 ALA 117 VAL 118 TYR 119 GLN 120 LEU 121 ARG 122 ASP 123 SER 124 LYS 125 SER 126 SER 127 ASP 128 LYS 129 SER 130 VAL 131 CYS 132 LEU 133 PHE 134 THR 135 ASP 136 PHE 137 ASP 138 SER 139 GLN 140 THR 141 ASN 142 VAL 143 SER 144 GLN 145 SER 146 LYS 147 ASP 148 SER 149 ASP 150 VAL 151 TYR 152 ILE 153 THR 154 ASP 155 LYS 156 CYS 157 VAL 158 LEU 159 ASP 160 MET 161 ARG 162 SER 163 MET 164 ASP 165 PHE 166 LYS 167 SER 168 ASN 169 SER 170 ALA 171 VAL 172 ALA 173 TRP 174 SER 175 ASN 176 LYS 177 SER 178 ASP 179 PHE 180 ALA 181 CYS 182 ALA 183 ASN 184 ALA 185 PHE 186 ASN 187 ASN 188 SER 189 ILE 190 ILE 191 PRO 192 GLU 193 ASP 194 THR 195 PHE 196 PHE 197 PRO 198 SER 199
Unit 5	ILE 4 ALA 5 GLY 6 ILE 7 THR 8 GLN 9 ALA 10 PRO 11 THR 12 SER 13 GLN 14 ILE 15 LEU 16 ALA 17 ALA 18 GLY 19 ARG 20 ARG 21 MET 22 THR 23 LEU 24 ARG 25 CYS 26 THR 27 GLN 28 ASP 29 MET 30 ARG 31 HIS 32 ASN 33 ALA 34 MET 35 TYR 36 TRP 37 TYR 38 ARG 39 GLN 40 ASP 41 LEU 42 GLY 43 LEU 44 GLY 45 LEU 46 ARG 47 LEU 48 ILE 49 HIS 50 TYR 51 SER 52 ASN 53 THR 54 ALA 55 GLY 56 THR 57 THR 58 GLY 59 LYS 60 GLY 61 GLU 62 VAL 63 PRO 64 ASP 65 GLY 66 TYR 67 SER 68 VAL 69 SER 70 ARG 71 ALA 72 ASN 73 THR 74 ASP 75 ASP 76 PHE 77 PRO 78 LEU 79 THR 80 LEU 81 ALA 82 SER 83 ALA 84 VAL 85 PRO 86 SER 87 GLN 88 THR 89 SER 90 VAL 91 TYR 92 PHE 93 CYS 94 ALA 95 SER 96 SER 97 LEU 98 SER 99 PHE 100 GLY 101 THR 102 GLU 103 ALA 104 PHE 105 PHE 106 GLY 107 GLN 108 GLY 109 THR 110 ARG 111 LEU 112 THR 113 VAL 114 VAL 115 GLU 116 ASP 117 LEU 118 ASN 119 LYS 120 VAL 121 PHE 122 PRO 123 PRO 124 GLU 125 VAL 126 ALA 127 VAL 128 PHE 129 GLU 130 PRO 131 SER 132 GLU 133 ALA 134 GLU 135 ILE 136 SER 137 HIS 138 THR 139 GLN 140 LYS 141 ALA 142 THR 143 LEU 144 VAL 145 CYS 146 LEU 147 ALA 148 THR 149 GLY 150 PHE 151 TYR 152 PRO 153 ASP 154 HIS 155 VAL 156 GLU 157 LEU 158 SER 159 TRP 160 TRP 161 VAL 162 ASN 163 GLY 164 LYS 165 GLU 166 VAL 167 HIS 168 SER 169 GLY 170 VAL 171 CYS 172 THR 173 ASP 174 PRO 175 GLN 176 PRO 177 LEU 178 LYS 179 GLU 180 GLN 181 PRO 182 ALA 183 LEU 184 ASN 185 ASP 186 SER 187 ARG 188 TYR 189 ALA 190 LEU 191 SER 192 SER 193 ARG 194 LEU 195 ARG 196 VAL 197 SER 198 ALA 199 THR 200 PHE 201 TRP 202 GLN 203 ASP 204 PRO 205 ARG 206 ASN 207 HIS 208 PHE 209 ARG 210 CYS 211 GLN 212 VAL 213 GLN 214 PHE 215 TYR 216 GLY 217 LEU 218 SER 219 GLU 220 ASN 221 ASP 222 GLU 223 TRP 224 THR 225 GLN 226 ASP 227 ARG 228 ALA 229 LYS 230 PRO 231 VAL 232 THR 233 GLN 234 ILE 235 VAL 236 SER 237 ALA 238 GLU 239 ALA 240 TRP 241 GLY 242 ARG 243 ALA 244 ASP 245