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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE ANALYSIS OF FORMATE OXIDASE
Keywords GLUCOSE-METHANOL-CHOLINE OXIDOREDUCTASE FAMILY, FORMATE OXID FORMYL-FAD, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3Q9T     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CHOLINE DEHYDROGENASE AND RELATED FLAVOPROTEINS  A 577 4527 0
2  Protein   CHOLINE DEHYDROGENASE AND RELATED FLAVOPROTEINS  B 577 4527 0
3  Protein   CHOLINE DEHYDROGENASE AND RELATED FLAVOPROTEINS  C 577 4527 0
4  Ligand   CHOLINE DEHYDROGENASE AND RELATED FLAVOPROTEINS  A 4 0 74
5  Ligand   CHOLINE DEHYDROGENASE AND RELATED FLAVOPROTEINS  B 2 0 61
6  Ligand   CHOLINE DEHYDROGENASE AND RELATED FLAVOPROTEINS  C 2 0 62
7 Water     900 0 900
total       2639 13581 1097

Proteins
Unit 1 ALA2 THR3 ASP4 GLY5 SER6 HIS7 PHE8 ASP9 PHE10 VAL11 ILE12 VAL13 GLY14 GLY15 GLY16 THR17 ALA18 GLY19 ASN20 THR21 VAL22 ALA23 GLY24 ARG25 LEU26 ALA27 GLU28 ASN29 PRO30 ASN31 VAL32 THR33 VAL34 LEU35 ILE36 VAL37 GLU38 ALA39 GLY40 ILE41 GLY42 ASN43 PRO44 GLU45 ASP46 ILE47 PRO48 GLU49 ILE50 THR51 THR52 PRO53 SER54 SER55 ALA56 MET57 ASP58 LEU59 ARG60 ASN61 SER62 LYS63 TYR64 ASP65 TRP66 ALA67 TYR68 LYS69 THR70 THR71 MET72 VAL73 ARG74 ARG75 ASP76 ASP77 TYR78 GLU79 ARG80 ILE81 GLU82 LYS83 PRO84 ASN85 THR86 ARG87 GLY88 LYS89 THR90 LEU91 GLY92 GLY93 SER94 SER95 SER96 LEU97 ASN98 TYR99 PHE100 THR101 TRP102 VAL103 PRO104 GLY105 HIS106 LYS107 ALA108 THR109 PHE110 ASP111 GLN112 TRP113 GLU114 GLU115 PHE116 GLY117 GLY118 LYS119 GLU120 TRP121 THR122 TRP123 ASP124 PRO125 LEU126 VAL127 PRO128 TYR129 LEU130 ARG131 LYS132 SER133 ALA134 THR135 TYR136 HIS137 ASP138 ASP139 PRO140 ARG141 LEU142 TYR143 SER144 PRO145 GLU146 LEU147 GLU148 LYS149 ILE150 GLY151 GLY152 GLY153 GLY154 PRO155 ILE156 PRO157 ILE158 SER159 HIS160 ALA161 GLU162 LEU163 ILE164 ASP165 GLU166 MET167 ALA168 PRO169 PHE170 ARG171 GLU172 ASN173 LEU174 THR175 LYS176 ALA177 TRP178 LYS179 SER180 MET181 GLY182 GLN183 PRO184 LEU185 ILE186 GLU187 ASN188 ILE189 TYR190 ASP191 GLY192 GLU193 MET194 ASP195 GLY196 LEU197 THR198 HIS199 CYS200 CYS201 ASP202 THR203 ILE204 TYR205 ARG206 GLY207 GLN208 ARG209 SER210 GLY211 SER212 PHE213 LEU214 PHE215 VAL216 LYS217 ASN218 LYS219 PRO220 ASN221 ILE222 THR223 ILE224 VAL225 PRO226 GLU227 VAL228 HIS229 SER230 LYS231 ARG232 LEU233 ILE234 ILE235 ASN236 GLU237 ALA238 ASP239 ARG240 THR241 CYS242 LYS243 GLY244 VAL245 THR246 VAL247 VAL248 THR249 ALA250 ALA251 GLY252 ASN253 GLU254 LEU255 ASN256 PHE257 PHE258 ALA259 ASP260 ARG261 GLU262 VAL263 ILE264 LEU265 SER266 GLN267 GLY268 VAL269 PHE270 GLU271 THR272 PRO273 LYS274 LEU275 LEU276 MET277 LEU278 SER279 GLY280 ILE281 GLY282 PRO283 THR284 ARG285 GLU286 LEU287 SER288 ARG289 HIS290 GLY291 ILE292 ASN293 THR294 ILE295 VAL296 ASP297 SER298 ARG299 HIS300 VAL301 GLY302 GLN303 ASN304 LEU305 MET306 ASP307 HIS308 PRO309 GLY310 VAL311 PRO312 PHE313 VAL314 LEU315 ARG316 VAL317 LYS318 ASP319 GLY320 PHE321 GLY322 MET323 ASP324 ASP325 VAL326 LEU327 LEU328 ARG329 HIS330 GLY331 PRO332 LYS333 ARG334 ASP335 ALA336 VAL337 VAL338 SER339 ALA340 TYR341 ASN342 LYS343 ASN344 ARG345 SER346 GLY347 PRO348 VAL349 GLY350 SER351 GLY352 LEU353 LEU354 GLU355 LEU356 VAL357 GLY358 PHE359 PRO360 ARG361 ILE362 ASP363 LYS364 TYR365 LEU366 GLU367 LYS368 ASP369 ALA370 GLU371 TYR372 ARG373 LYS374 ALA375 LYS376 ALA377 ALA378 ASN379 GLY380 GLY381 LYS382 ASP383 PRO384 PHE385 SER386 PRO387 LEU388 GLY389 GLN390 PRO391 HIS392 PHE393 GLU394 LEU395 ASP396 PHE397 VAL398 CYS399 MET400 PHE401 GLY402 THR403 ALA404 PHE405 GLN406 TRP407 HIS408 PHE409 PRO410 THR411 PRO412 LYS413 THR414 GLY415 ASP416 HIS417 LEU418 THR419 VAL420 VAL421 VAL422 ASP423 LEU424 VAL425 ARG426 PRO427 ILE428 SER429 ASP430 PRO431 GLY432 GLU433 VAL434 THR435 LEU436 ASN437 SER438 ALA439 ASP440 PRO441 PHE442 GLN445 GLN446 PRO447 ASN448 ILE449 ASN450 LEU451 ASN452 PHE453 PHE454 ALA455 ASN456 ASP457 LEU458 ASP459 ILE460 ILE461 ALA462 MET463 ARG464 GLU465 GLY466 ILE467 ARG468 PHE469 SER470 TYR471 ASP472 LEU473 LEU474 PHE475 LYS476 GLY477 GLU478 GLY479 PHE480 LYS481 ASP482 LEU483 VAL484 GLU485 SER486 GLU487 TYR488 PRO489 TRP490 GLU491 MET492 PRO493 LEU494 ASP495 SER496 ASP497 LYS498 GLU499 MET500 HIS501 ARG502 ALA503 VAL504 LEU505 ASP506 ARG507 CYS508 GLN509 THR510 ALA511 PHE512 HIS513 PRO514 THR515 GLY516 THR517 ALA518 ARG519 LEU520 SER521 LYS522 ASN523 ILE524 ASP525 GLN526 GLY527 VAL528 VAL529 ASP530 PRO531 LYS532 LEU533 LYS534 VAL535 HIS536 GLY537 ILE538 LYS539 LYS540 LEU541 ARG542 VAL543 ALA544 ASP545 ALA546 SER547 VAL548 ILE549 PRO550 ILE551 ILE552 PRO553 ASP554 CYS555 ARG556 ILE557 GLN558 ASN559 SER560 VAL561 TYR562 ALA563 VAL564 GLY565 GLU566 LYS567 CYS568 ALA569 ASP570 MET571 ILE572 LYS573 ALA574 GLU575 HIS576 LYS577 ASP578 LEU579 TYR580
Unit 2 ALA2 THR3 ASP4 GLY5 SER6 HIS7 PHE8 ASP9 PHE10 VAL11 ILE12 VAL13 GLY14 GLY15 GLY16 THR17 ALA18 GLY19 ASN20 THR21 VAL22 ALA23 GLY24 ARG25 LEU26 ALA27 GLU28 ASN29 PRO30 ASN31 VAL32 THR33 VAL34 LEU35 ILE36 VAL37 GLU38 ALA39 GLY40 ILE41 GLY42 ASN43 PRO44 GLU45 ASP46 ILE47 PRO48 GLU49 ILE50 THR51 THR52 PRO53 SER54 SER55 ALA56 MET57 ASP58 LEU59 ARG60 ASN61 SER62 LYS63 TYR64 ASP65 TRP66 ALA67 TYR68 LYS69 THR70 THR71 MET72 VAL73 ARG74 ARG75 ASP76 ASP77 TYR78 GLU79 ARG80 ILE81 GLU82 LYS83 PRO84 ASN85 THR86 ARG87 GLY88 LYS89 THR90 LEU91 GLY92 GLY93 SER94 SER95 SER96 LEU97 ASN98 TYR99 PHE100 THR101 TRP102 VAL103 PRO104 GLY105 HIS106 LYS107 ALA108 THR109 PHE110 ASP111 GLN112 TRP113 GLU114 GLU115 PHE116 GLY117 GLY118 LYS119 GLU120 TRP121 THR122 TRP123 ASP124 PRO125 LEU126 VAL127 PRO128 TYR129 LEU130 ARG131 LYS132 SER133 ALA134 THR135 TYR136 HIS137 ASP138 ASP139 PRO140 ARG141 LEU142 TYR143 SER144 PRO145 GLU146 LEU147 GLU148 LYS149 ILE150 GLY151 GLY152 GLY153 GLY154 PRO155 ILE156 PRO157 ILE158 SER159 HIS160 ALA161 GLU162 LEU163 ILE164 ASP165 GLU166 MET167 ALA168 PRO169 PHE170 ARG171 GLU172 ASN173 LEU174 THR175 LYS176 ALA177 TRP178 LYS179 SER180 MET181 GLY182 GLN183 PRO184 LEU185 ILE186 GLU187 ASN188 ILE189 TYR190 ASP191 GLY192 GLU193 MET194 ASP195 GLY196 LEU197 THR198 HIS199 CYS200 CYS201 ASP202 THR203 ILE204 TYR205 ARG206 GLY207 GLN208 ARG209 SER210 GLY211 SER212 PHE213 LEU214 PHE215 VAL216 LYS217 ASN218 LYS219 PRO220 ASN221 ILE222 THR223 ILE224 VAL225 PRO226 GLU227 VAL228 HIS229 SER230 LYS231 ARG232 LEU233 ILE234 ILE235 ASN236 GLU237 ALA238 ASP239 ARG240 THR241 CYS242 LYS243 GLY244 VAL245 THR246 VAL247 VAL248 THR249 ALA250 ALA251 GLY252 ASN253 GLU254 LEU255 ASN256 PHE257 PHE258 ALA259 ASP260 ARG261 GLU262 VAL263 ILE264 LEU265 SER266 GLN267 GLY268 VAL269 PHE270 GLU271 THR272 PRO273 LYS274 LEU275 LEU276 MET277 LEU278 SER279 GLY280 ILE281 GLY282 PRO283 THR284 ARG285 GLU286 LEU287 SER288 ARG289 HIS290 GLY291 ILE292 ASN293 THR294 ILE295 VAL296 ASP297 SER298 ARG299 HIS300 VAL301 GLY302 GLN303 ASN304 LEU305 MET306 ASP307 HIS308 PRO309 GLY310 VAL311 PRO312 PHE313 VAL314 LEU315 ARG316 VAL317 LYS318 ASP319 GLY320 PHE321 GLY322 MET323 ASP324 ASP325 VAL326 LEU327 LEU328 ARG329 HIS330 GLY331 PRO332 LYS333 ARG334 ASP335 ALA336 VAL337 VAL338 SER339 ALA340 TYR341 ASN342 LYS343 ASN344 ARG345 SER346 GLY347 PRO348 VAL349 GLY350 SER351 GLY352 LEU353 LEU354 GLU355 LEU356 VAL357 GLY358 PHE359 PRO360 ARG361 ILE362 ASP363 LYS364 TYR365 LEU366 GLU367 LYS368 ASP369 ALA370 GLU371 TYR372 ARG373 LYS374 ALA375 LYS376 ALA377 ALA378 ASN379 GLY380 GLY381 LYS382 ASP383 PRO384 PHE385 SER386 PRO387 LEU388 GLY389 GLN390 PRO391 HIS392 PHE393 GLU394 LEU395 ASP396 PHE397 VAL398 CYS399 MET400 PHE401 GLY402 THR403 ALA404 PHE405 GLN406 TRP407 HIS408 PHE409 PRO410 THR411 PRO412 LYS413 THR414 GLY415 ASP416 HIS417 LEU418 THR419 VAL420 VAL421 VAL422 ASP423 LEU424 VAL425 ARG426 PRO427 ILE428 SER429 ASP430 PRO431 GLY432 GLU433 VAL434 THR435 LEU436 ASN437 SER438 ALA439 ASP440 PRO441 PHE442 GLN445 GLN446 PRO447 ASN448 ILE449 ASN450 LEU451 ASN452 PHE453 PHE454 ALA455 ASN456 ASP457 LEU458 ASP459 ILE460 ILE461 ALA462 MET463 ARG464 GLU465 GLY466 ILE467 ARG468 PHE469 SER470 TYR471 ASP472 LEU473 LEU474 PHE475 LYS476 GLY477 GLU478 GLY479 PHE480 LYS481 ASP482 LEU483 VAL484 GLU485 SER486 GLU487 TYR488 PRO489 TRP490 GLU491 MET492 PRO493 LEU494 ASP495 SER496 ASP497 LYS498 GLU499 MET500 HIS501 ARG502 ALA503 VAL504 LEU505 ASP506 ARG507 CYS508 GLN509 THR510 ALA511 PHE512 HIS513 PRO514 THR515 GLY516 THR517 ALA518 ARG519 LEU520 SER521 LYS522 ASN523 ILE524 ASP525 GLN526 GLY527 VAL528 VAL529 ASP530 PRO531 LYS532 LEU533 LYS534 VAL535 HIS536 GLY537 ILE538 LYS539 LYS540 LEU541 ARG542 VAL543 ALA544 ASP545 ALA546 SER547 VAL548 ILE549 PRO550 ILE551 ILE552 PRO553 ASP554 CYS555 ARG556 ILE557 GLN558 ASN559 SER560 VAL561 TYR562 ALA563 VAL564 GLY565 GLU566 LYS567 CYS568 ALA569 ASP570 MET571 ILE572 LYS573 ALA574 GLU575 HIS576 LYS577 ASP578 LEU579 TYR580
Unit 3 ALA2 THR3 ASP4 GLY5 SER6 HIS7 PHE8 ASP9 PHE10 VAL11 ILE12 VAL13 GLY14 GLY15 GLY16 THR17 ALA18 GLY19 ASN20 THR21 VAL22 ALA23 GLY24 ARG25 LEU26 ALA27 GLU28 ASN29 PRO30 ASN31 VAL32 THR33 VAL34 LEU35 ILE36 VAL37 GLU38 ALA39 GLY40 ILE41 GLY42 ASN43 PRO44 GLU45 ASP46 ILE47 PRO48 GLU49 ILE50 THR51 THR52 PRO53 SER54 SER55 ALA56 MET57 ASP58 LEU59 ARG60 ASN61 SER62 LYS63 TYR64 ASP65 TRP66 ALA67 TYR68 LYS69 THR70 THR71 MET72 VAL73 ARG74 ARG75 ASP76 ASP77 TYR78 GLU79 ARG80 ILE81 GLU82 LYS83 PRO84 ASN85 THR86 ARG87 GLY88 LYS89 THR90 LEU91 GLY92 GLY93 SER94 SER95 SER96 LEU97 ASN98 TYR99 PHE100 THR101 TRP102 VAL103 PRO104 GLY105 HIS106 LYS107 ALA108 THR109 PHE110 ASP111 GLN112 TRP113 GLU114 GLU115 PHE116 GLY117 GLY118 LYS119 GLU120 TRP121 THR122 TRP123 ASP124 PRO125 LEU126 VAL127 PRO128 TYR129 LEU130 ARG131 LYS132 SER133 ALA134 THR135 TYR136 HIS137 ASP138 ASP139 PRO140 ARG141 LEU142 TYR143 SER144 PRO145 GLU146 LEU147 GLU148 LYS149 ILE150 GLY151 GLY152 GLY153 GLY154 PRO155 ILE156 PRO157 ILE158 SER159 HIS160 ALA161 GLU162 LEU163 ILE164 ASP165 GLU166 MET167 ALA168 PRO169 PHE170 ARG171 GLU172 ASN173 LEU174 THR175 LYS176 ALA177 TRP178 LYS179 SER180 MET181 GLY182 GLN183 PRO184 LEU185 ILE186 GLU187 ASN188 ILE189 TYR190 ASP191 GLY192 GLU193 MET194 ASP195 GLY196 LEU197 THR198 HIS199 CYS200 CYS201 ASP202 THR203 ILE204 TYR205 ARG206 GLY207 GLN208 ARG209 SER210 GLY211 SER212 PHE213 LEU214 PHE215 VAL216 LYS217 ASN218 LYS219 PRO220 ASN221 ILE222 THR223 ILE224 VAL225 PRO226 GLU227 VAL228 HIS229 SER230 LYS231 ARG232 LEU233 ILE234 ILE235 ASN236 GLU237 ALA238 ASP239 ARG240 THR241 CYS242 LYS243 GLY244 VAL245 THR246 VAL247 VAL248 THR249 ALA250 ALA251 GLY252 ASN253 GLU254 LEU255 ASN256 PHE257 PHE258 ALA259 ASP260 ARG261 GLU262 VAL263 ILE264 LEU265 SER266 GLN267 GLY268 VAL269 PHE270 GLU271 THR272 PRO273 LYS274 LEU275 LEU276 MET277 LEU278 SER279 GLY280 ILE281 GLY282 PRO283 THR284 ARG285 GLU286 LEU287 SER288 ARG289 HIS290 GLY291 ILE292 ASN293 THR294 ILE295 VAL296 ASP297 SER298 ARG299 HIS300 VAL301 GLY302 GLN303 ASN304 LEU305 MET306 ASP307 HIS308 PRO309 GLY310 VAL311 PRO312 PHE313 VAL314 LEU315 ARG316 VAL317 LYS318 ASP319 GLY320 PHE321 GLY322 MET323 ASP324 ASP325 VAL326 LEU327 LEU328 ARG329 HIS330 GLY331 PRO332 LYS333 ARG334 ASP335 ALA336 VAL337 VAL338 SER339 ALA340 TYR341 ASN342 LYS343 ASN344 ARG345 SER346 GLY347 PRO348 VAL349 GLY350 SER351 GLY352 LEU353 LEU354 GLU355 LEU356 VAL357 GLY358 PHE359 PRO360 ARG361 ILE362 ASP363 LYS364 TYR365 LEU366 GLU367 LYS368 ASP369 ALA370 GLU371 TYR372 ARG373 LYS374 ALA375 LYS376 ALA377 ALA378 ASN379 GLY380 GLY381 LYS382 ASP383 PRO384 PHE385 SER386 PRO387 LEU388 GLY389 GLN390 PRO391 HIS392 PHE393 GLU394 LEU395 ASP396 PHE397 VAL398 CYS399 MET400 PHE401 GLY402 THR403 ALA404 PHE405 GLN406 TRP407 HIS408 PHE409 PRO410 THR411 PRO412 LYS413 THR414 GLY415 ASP416 HIS417 LEU418 THR419 VAL420 VAL421 VAL422 ASP423 LEU424 VAL425 ARG426 PRO427 ILE428 SER429 ASP430 PRO431 GLY432 GLU433 VAL434 THR435 LEU436 ASN437 SER438 ALA439 ASP440 PRO441 PHE442 GLN445 GLN446 PRO447 ASN448 ILE449 ASN450 LEU451 ASN452 PHE453 PHE454 ALA455 ASN456 ASP457 LEU458 ASP459 ILE460 ILE461 ALA462 MET463 ARG464 GLU465 GLY466 ILE467 ARG468 PHE469 SER470 TYR471 ASP472 LEU473 LEU474 PHE475 LYS476 GLY477 GLU478 GLY479 PHE480 LYS481 ASP482 LEU483 VAL484 GLU485 SER486 GLU487 TYR488 PRO489 TRP490 GLU491 MET492 PRO493 LEU494 ASP495 SER496 ASP497 LYS498 GLU499 MET500 HIS501 ARG502 ALA503 VAL504 LEU505 ASP506 ARG507 CYS508 GLN509 THR510 ALA511 PHE512 HIS513 PRO514 THR515 GLY516 THR517 ALA518 ARG519 LEU520 SER521 LYS522 ASN523 ILE524 ASP525 GLN526 GLY527 VAL528 VAL529 ASP530 PRO531 LYS532 LEU533 LYS534 VAL535 HIS536 GLY537 ILE538 LYS539 LYS540 LEU541 ARG542 VAL543 ALA544 ASP545 ALA546 SER547 VAL548 ILE549 PRO550 ILE551 ILE552 PRO553 ASP554 CYS555 ARG556 ILE557 GLN558 ASN559 SER560 VAL561 TYR562 ALA563 VAL564 GLY565 GLU566 LYS567 CYS568 ALA569 ASP570 MET571 ILE572 LYS573 ALA574 GLU575 HIS576 LYS577 ASP578 LEU579 TYR580

Ligands
Unit 4 ACT1 MRD581 MRD582 FAY600
Unit 5 PEG1 FAY600
Unit 6 MPD1 FAY600

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany