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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL ANALYSIS OF A CLASS I PREQ1 RIBOSWITCH APTAMER IN METABOLITE-BOUND STATE
Keywords PREQ1, PREQ0, RNA, RIBOSOMAL BINDING SITE, APTAMER, METABOLI PSEUDOKNOT, H-TYPE, RIBOSWITCH
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3Q50     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 33 702 0
2  Ligand   PREQ1 RIBOSWITCH  A 5 0 33
3 Water     1 0 1
total       39 702 34

Nucleic acids
Unit 1 C1 U2 G3 G4 G5 U6 C7 G8 C9 A10 G11 U12 A13 A14 C15 C16 C17 C18 A19 G20 U21 U22 A23 A24 C25 A26 A27 A28 A29 C30 A31 A32 G33

Ligands
Unit 2 PRF34 SO4101 SO4102 SO4103 SO4104

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany