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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE GLUN1 N-TERMINAL DOMAIN (NTD)
Keywords NTD, NMDA, GLUN1, ION CHANNEL, GLYCOSYLATION, TRANSPORT PROT
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3Q41     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1  A 371 2919 0
2  Protein   GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1  B 367 2887 0
3  Protein   GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1  C 371 2919 0
4  Ligand   GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1  A 9 0 74
5  Ligand   GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1  B 7 0 72
6  Ligand   GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1  C 7 0 72
7 Water     25 0 25
total       1157 8725 243

Proteins
Unit 1 PRO24 LYS25 ILE26 VAL27 ASN28 ILE29 GLY30 ALA31 VAL32 LEU33 SER34 THR35 ARG36 LYS37 HIS38 GLU39 GLN40 MET41 PHE42 ARG43 GLU44 ALA45 VAL46 ASN47 GLN48 ALA49 ASN50 LYS51 ARG52 HIS53 GLY54 SER55 TRP56 LYS57 ILE58 GLN59 LEU60 ASN61 ALA62 THR63 SER64 VAL65 THR66 HIS67 LYS68 PRO69 ASN70 ALA71 ILE72 GLN73 MET74 ALA75 LEU76 SER77 VAL78 CYS79 GLU80 ASP81 LEU82 ILE83 SER84 SER85 GLN86 VAL87 TYR88 ALA89 ILE90 LEU91 VAL92 SER93 HIS94 PRO95 PRO96 THR97 PRO98 ASN99 ASP100 HIS101 PHE102 THR103 PRO104 THR105 PRO106 VAL107 SER108 TYR109 THR110 ALA111 GLY112 PHE113 TYR114 ARG115 ILE116 PRO117 VAL118 LEU119 GLY120 LEU121 THR122 THR123 ARG124 MET125 SER126 ILE127 TYR128 SER129 ASP130 LYS131 SER132 ILE133 HIS134 LEU135 SER136 PHE137 LEU138 ARG139 THR140 VAL141 PRO142 PRO143 TYR144 SER145 HIS146 GLN147 SER148 SER149 VAL150 TRP151 PHE152 GLU153 MET154 MET155 ARG156 VAL157 TYR158 ASN159 TRP160 ASN161 HIS162 ILE163 ILE164 LEU165 LEU166 VAL167 SER168 ASP169 ASP170 HIS171 GLU172 GLY173 ARG174 ALA175 ALA176 GLN177 LYS178 ARG179 LEU180 GLU181 THR182 LEU183 LEU184 GLU185 GLU186 ARG187 GLU188 SER189 LYS190 ALA191 GLU192 LYS193 VAL194 LEU195 GLN196 PHE197 ASP198 PRO199 GLY200 THR201 LYS202 ASN203 VAL204 THR205 ALA206 LEU207 LEU208 MET209 GLU210 ALA211 ARG212 GLU213 LEU214 GLU215 ALA216 ARG217 VAL218 ILE219 ILE220 LEU221 SER222 ALA223 SER224 GLU225 ASP226 ASP227 ALA228 ALA229 THR230 VAL231 TYR232 ARG233 ALA234 ALA235 ALA236 MET237 LEU238 ASN239 MET240 THR241 GLY242 SER243 GLY244 TYR245 VAL246 TRP247 LEU248 VAL249 GLY250 GLU251 ARG252 GLU253 ILE254 SER255 GLY256 ASN257 ALA258 LEU259 ARG260 TYR261 ALA262 PRO263 ASP264 GLY265 ILE266 ILE267 GLY268 LEU269 GLN270 LEU271 ILE272 ASN273 GLY274 LYS275 ASN276 GLU277 SER278 ALA279 HIS280 ILE281 SER282 ASP283 ALA284 VAL285 GLY286 VAL287 VAL288 ALA289 GLN290 ALA291 VAL292 HIS293 GLU294 LEU295 LEU296 GLU297 LYS298 GLU299 ASN300 ILE301 THR302 ASP303 PRO304 PRO305 ARG306 GLY307 CYS308 VAL309 GLY310 ASN311 THR312 ASN313 ILE314 TRP315 LYS316 THR317 GLY318 PRO319 LEU320 PHE321 LYS322 ARG323 VAL324 LEU325 MET326 SER327 SER328 LYS329 TYR330 ALA331 ASP332 GLY333 VAL334 THR335 GLY336 ARG337 VAL338 GLU339 PHE340 ASN341 GLU342 ASP343 GLY344 ASP345 ARG346 LYS347 PHE348 ALA349 ASN350 TYR351 SER352 ILE353 MET354 ASN355 LEU356 GLN357 ASN358 ARG359 LYS360 LEU361 VAL362 GLN363 VAL364 GLY365 ILE366 TYR367 ASN368 GLY369 THR370 HIS371 VAL372 ILE373 PRO374 ASN375 ASP376 ARG377 LYS378 ILE379 ILE380 TRP381 PRO382 GLY383 GLY384 GLU385 THR386 GLU387 LYS388 PRO389 ARG390 GLY391 TYR392 GLN393 VAL394
Unit 2 PRO24 LYS25 ILE26 VAL27 ASN28 ILE29 GLY30 ALA31 VAL32 LEU33 SER34 THR35 ARG36 LYS37 HIS38 GLU39 GLN40 MET41 PHE42 ARG43 GLU44 ALA45 VAL46 ASN47 GLN48 ALA49 ASN50 LYS51 ARG52 HIS53 GLY54 SER55 TRP56 LYS57 ILE58 GLN59 LEU60 ASN61 ALA62 THR63 SER64 VAL65 THR66 HIS67 LYS68 PRO69 ASN70 ALA71 ILE72 GLN73 MET74 ALA75 LEU76 SER77 VAL78 CYS79 GLU80 ASP81 LEU82 ILE83 SER84 SER85 GLN86 VAL87 TYR88 ALA89 ILE90 LEU91 VAL92 SER93 HIS94 PRO95 PRO96 THR97 PRO98 ASN99 ASP100 HIS101 PHE102 THR103 PRO104 THR105 PRO106 VAL107 SER108 TYR109 THR110 ALA111 GLY112 PHE113 TYR114 ARG115 ILE116 PRO117 VAL118 LEU119 GLY120 LEU121 THR122 THR123 ARG124 MET125 SER126 ILE127 TYR128 SER129 ASP130 LYS131 SER132 ILE133 HIS134 LEU135 SER136 PHE137 LEU138 ARG139 THR140 VAL141 PRO142 PRO143 TYR144 SER145 HIS146 GLN147 SER148 SER149 VAL150 TRP151 PHE152 GLU153 MET154 MET155 ARG156 VAL157 TYR158 ASN159 TRP160 ASN161 HIS162 ILE163 ILE164 LEU165 LEU166 VAL167 SER168 ASP169 ASP170 HIS171 GLU172 GLY173 ARG174 ALA175 ALA176 GLN177 LYS178 ARG179 LEU180 GLU181 THR182 LEU183 LEU184 GLU185 GLU186 ARG187 GLU188 SER189 LYS190 ALA191 GLU192 LYS193 VAL194 LEU195 GLN196 PHE197 ASP198 PRO199 GLY200 THR201 LYS202 ASN203 VAL204 THR205 ALA206 LEU207 LEU208 MET209 GLU210 ALA211 ARG212 GLU213 LEU214 GLU215 ALA216 ARG217 VAL218 ILE219 ILE220 LEU221 SER222 ALA223 SER224 GLU225 ASP226 ASP227 ALA228 ALA229 THR230 VAL231 TYR232 ARG233 ALA234 ALA235 ALA236 MET237 LEU238 ASN239 MET240 THR241 GLY242 SER243 GLY244 TYR245 VAL246 TRP247 LEU248 VAL249 GLY250 GLU251 ARG252 GLU253 ILE254 SER255 GLY256 ASN257 ALA258 LEU259 ARG260 TYR261 ALA262 PRO263 ASP264 GLY265 ILE266 ILE267 GLY268 LEU269 GLN270 LEU271 ILE272 ASN273 GLY274 LYS275 ASN276 GLU277 SER278 ALA279 HIS280 ILE281 SER282 ASP283 ALA284 VAL285 GLY286 VAL287 VAL288 ALA289 GLN290 ALA291 VAL292 HIS293 GLU294 LEU295 LEU296 GLU297 LYS298 GLU299 ASN300 ILE301 THR302 ASP303 PRO304 PRO305 ARG306 GLY307 CYS308 VAL309 GLY310 ASN311 THR312 ASN313 ILE314 TRP315 LYS316 THR317 GLY318 PRO319 LEU320 PHE321 LYS322 ARG323 VAL324 LEU325 MET326 SER327 SER328 LYS329 TYR330 ALA331 ASP332 GLY333 VAL334 THR335 GLY336 ARG337 VAL338 GLU339 PHE340 ASN341 GLU342 ASP343 GLY344 ASP345 ARG346 LYS347 PHE348 ALA349 ASN350 TYR351 SER352 ILE353 MET354 ASN355 LEU356 GLN357 ASN358 ARG359 LYS360 LEU361 VAL362 GLN363 VAL364 GLY365 ILE366 TYR367 ASN368 GLY369 THR370 HIS371 VAL372 ILE373 PRO374 ASN375 ASP376 ARG377 LYS378 ILE379 ILE380 TRP381 PRO382 GLY383 GLY384 GLU385 THR386 GLU387 LYS388 PRO389 ARG390
Unit 3 PRO24 LYS25 ILE26 VAL27 ASN28 ILE29 GLY30 ALA31 VAL32 LEU33 SER34 THR35 ARG36 LYS37 HIS38 GLU39 GLN40 MET41 PHE42 ARG43 GLU44 ALA45 VAL46 ASN47 GLN48 ALA49 ASN50 LYS51 ARG52 HIS53 GLY54 SER55 TRP56 LYS57 ILE58 GLN59 LEU60 ASN61 ALA62 THR63 SER64 VAL65 THR66 HIS67 LYS68 PRO69 ASN70 ALA71 ILE72 GLN73 MET74 ALA75 LEU76 SER77 VAL78 CYS79 GLU80 ASP81 LEU82 ILE83 SER84 SER85 GLN86 VAL87 TYR88 ALA89 ILE90 LEU91 VAL92 SER93 HIS94 PRO95 PRO96 THR97 PRO98 ASN99 ASP100 HIS101 PHE102 THR103 PRO104 THR105 PRO106 VAL107 SER108 TYR109 THR110 ALA111 GLY112 PHE113 TYR114 ARG115 ILE116 PRO117 VAL118 LEU119 GLY120 LEU121 THR122 THR123 ARG124 MET125 SER126 ILE127 TYR128 SER129 ASP130 LYS131 SER132 ILE133 HIS134 LEU135 SER136 PHE137 LEU138 ARG139 THR140 VAL141 PRO142 PRO143 TYR144 SER145 HIS146 GLN147 SER148 SER149 VAL150 TRP151 PHE152 GLU153 MET154 MET155 ARG156 VAL157 TYR158 ASN159 TRP160 ASN161 HIS162 ILE163 ILE164 LEU165 LEU166 VAL167 SER168 ASP169 ASP170 HIS171 GLU172 GLY173 ARG174 ALA175 ALA176 GLN177 LYS178 ARG179 LEU180 GLU181 THR182 LEU183 LEU184 GLU185 GLU186 ARG187 GLU188 SER189 LYS190 ALA191 GLU192 LYS193 VAL194 LEU195 GLN196 PHE197 ASP198 PRO199 GLY200 THR201 LYS202 ASN203 VAL204 THR205 ALA206 LEU207 LEU208 MET209 GLU210 ALA211 ARG212 GLU213 LEU214 GLU215 ALA216 ARG217 VAL218 ILE219 ILE220 LEU221 SER222 ALA223 SER224 GLU225 ASP226 ASP227 ALA228 ALA229 THR230 VAL231 TYR232 ARG233 ALA234 ALA235 ALA236 MET237 LEU238 ASN239 MET240 THR241 GLY242 SER243 GLY244 TYR245 VAL246 TRP247 LEU248 VAL249 GLY250 GLU251 ARG252 GLU253 ILE254 SER255 GLY256 ASN257 ALA258 LEU259 ARG260 TYR261 ALA262 PRO263 ASP264 GLY265 ILE266 ILE267 GLY268 LEU269 GLN270 LEU271 ILE272 ASN273 GLY274 LYS275 ASN276 GLU277 SER278 ALA279 HIS280 ILE281 SER282 ASP283 ALA284 VAL285 GLY286 VAL287 VAL288 ALA289 GLN290 ALA291 VAL292 HIS293 GLU294 LEU295 LEU296 GLU297 LYS298 GLU299 ASN300 ILE301 THR302 ASP303 PRO304 PRO305 ARG306 GLY307 CYS308 VAL309 GLY310 ASN311 THR312 ASN313 ILE314 TRP315 LYS316 THR317 GLY318 PRO319 LEU320 PHE321 LYS322 ARG323 VAL324 LEU325 MET326 SER327 SER328 LYS329 TYR330 ALA331 ASP332 GLY333 VAL334 THR335 GLY336 ARG337 VAL338 GLU339 PHE340 ASN341 GLU342 ASP343 GLY344 ASP345 ARG346 LYS347 PHE348 ALA349 ASN350 TYR351 SER352 ILE353 MET354 ASN355 LEU356 GLN357 ASN358 ARG359 LYS360 LEU361 VAL362 GLN363 VAL364 GLY365 ILE366 TYR367 ASN368 GLY369 THR370 HIS371 VAL372 ILE373 PRO374 ASN375 ASP376 ARG377 LYS378 ILE379 ILE380 TRP381 PRO382 GLY383 GLY384 GLU385 THR386 GLU387 LYS388 PRO389 ARG390 GLY391 TYR392 GLN393 VAL394

Ligands
Unit 4 CL1 CL3 CL4 CL5 NAG405 NAG406 NAG407 NAG408 NAG409
Unit 5 CL6 CL7 NAG405 NAG406 NAG407 NAG408 NAG409
Unit 6 CL2 CL8 NAG405 NAG406 NAG407 NAG408 NAG409

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany