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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CFIM68 RRM/CFIM25/RNA COMPLEX
Keywords CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END PROCESSING, PROCESSING, CLEAVAGE FACTOR, NUDIX PROTEIN, PROTEIN-PROTEIN PROTEIN-RNA COMPLEX, RRM, NUDIX FOLD, RNA BINDING PROTEIN-R COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3Q2T     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 205 1689 0
2  Protein    B 203 1672 0
3  Protein    C 93 731 0
4  Protein    D 92 726 0
5  RNA    E 5 102 0
6  RNA    F 5 102 0
7 Water     3 0 3
total       606 5022 3

Proteins
Unit 1 GLY21 ASN22 LYS23 TYR24 ILE25 GLN26 GLN27 THR28 LYS29 PRO30 LEU31 THR32 LEU33 GLU34 ARG35 THR36 ILE37 ASN38 LEU39 TYR40 PRO41 LEU42 THR43 ASN44 TYR45 THR46 PHE47 GLY48 THR49 LYS50 GLU51 PRO52 LEU53 TYR54 GLU55 LYS56 ASP57 SER58 SER59 VAL60 ALA61 ALA62 ARG63 PHE64 GLN65 ARG66 MET67 ARG68 GLU69 GLU70 PHE71 ASP72 LYS73 ILE74 GLY75 MET76 ARG77 ARG78 THR79 VAL80 GLU81 GLY82 VAL83 LEU84 ILE85 VAL86 HIS87 GLU88 HIS89 ARG90 LEU91 PRO92 HIS93 VAL94 LEU95 LEU96 LEU97 GLN98 LEU99 GLY100 THR101 THR102 PHE103 PHE104 LYS105 LEU106 PRO107 GLY108 GLY109 GLU110 LEU111 ASN112 PRO113 GLY114 GLU115 ASP116 GLU117 VAL118 GLU119 GLY120 LEU121 LYS122 ARG123 LEU124 MET125 THR126 GLU127 ILE128 LEU129 GLY130 ARG131 GLN132 ASP133 LEU136 GLN137 ASP138 TRP139 VAL140 ILE141 ASP142 ASP143 CYS144 ILE145 GLY146 ASN147 TRP148 TRP149 ARG150 PRO151 ASN152 PHE153 GLU154 PRO155 PRO156 GLN157 TYR158 PRO159 TYR160 ILE161 PRO162 ALA163 HIS164 ILE165 THR166 LYS167 PRO168 LYS169 GLU170 HIS171 LYS172 LYS173 LEU174 PHE175 LEU176 VAL177 GLN178 LEU179 GLN180 GLU181 LYS182 ALA183 LEU184 PHE185 ALA186 VAL187 PRO188 LYS189 ASN190 TYR191 LYS192 LEU193 VAL194 ALA195 ALA196 PRO197 LEU198 PHE199 GLU200 LEU201 TYR202 ASP203 ASN204 ALA205 PRO206 GLY207 TYR208 GLY209 PRO210 ILE211 ILE212 SER213 SER214 LEU215 PRO216 GLN217 LEU218 LEU219 SER220 ARG221 PHE222 ASN223 PHE224 ILE225 TYR226 ASN227
Unit 2 GLY21 ASN22 LYS23 TYR24 ILE25 GLN26 GLN27 THR28 LYS29 PRO30 LEU31 THR32 LEU33 GLU34 ARG35 THR36 ILE37 ASN38 LEU39 TYR40 PRO41 LEU42 THR43 ASN44 TYR45 THR46 PHE47 GLY48 THR49 LYS50 GLU51 PRO52 LEU53 TYR54 GLU55 LYS56 ASP57 SER58 SER59 VAL60 ALA61 ALA62 ARG63 PHE64 GLN65 ARG66 MET67 ARG68 GLU69 GLU70 PHE71 ASP72 LYS73 ILE74 GLY75 MET76 ARG77 ARG78 THR79 VAL80 GLU81 GLY82 VAL83 LEU84 ILE85 VAL86 HIS87 GLU88 HIS89 ARG90 LEU91 PRO92 HIS93 VAL94 LEU95 LEU96 LEU97 GLN98 LEU99 GLY100 THR101 THR102 PHE103 PHE104 LYS105 LEU106 PRO107 GLY108 GLY109 GLU110 LEU111 ASN112 PRO113 GLY114 GLU115 ASP116 GLU117 VAL118 GLU119 GLY120 LEU121 LYS122 ARG123 LEU124 MET125 THR126 GLU127 ILE128 LEU129 GLY130 ARG131 GLN132 ASP133 ASP138 TRP139 VAL140 ILE141 ASP142 ASP143 CYS144 ILE145 GLY146 ASN147 TRP148 TRP149 ARG150 PRO151 ASN152 PHE153 GLU154 PRO155 PRO156 GLN157 TYR158 PRO159 TYR160 ILE161 PRO162 ALA163 HIS164 ILE165 THR166 LYS167 PRO168 LYS169 GLU170 HIS171 LYS172 LYS173 LEU174 PHE175 LEU176 VAL177 GLN178 LEU179 GLN180 GLU181 LYS182 ALA183 LEU184 PHE185 ALA186 VAL187 PRO188 LYS189 ASN190 TYR191 LYS192 LEU193 VAL194 ALA195 ALA196 PRO197 LEU198 PHE199 GLU200 LEU201 TYR202 ASP203 ASN204 ALA205 PRO206 GLY207 TYR208 GLY209 PRO210 ILE211 ILE212 SER213 SER214 LEU215 PRO216 GLN217 LEU218 LEU219 SER220 ARG221 PHE222 ASN223 PHE224 ILE225 TYR226 ASN227
Unit 3 ILE81 ALA82 LEU83 TYR84 ILE85 GLY86 ASN87 LEU88 THR89 TRP90 TRP91 THR92 THR93 ASP94 GLU95 ASP96 LEU97 THR98 GLU99 ALA100 VAL101 HIS102 SER103 LEU104 GLY105 VAL106 ASN107 ASP108 ILE109 LEU110 GLU111 ILE112 LYS113 PHE114 PHE115 GLU116 ASN117 ARG118 ALA119 ASN120 GLY121 GLN122 SER123 LYS124 GLY125 PHE126 ALA127 LEU128 VAL129 GLY130 VAL131 GLY132 SER133 GLU134 ALA135 SER136 SER137 LYS138 LYS139 LEU140 MET141 ASP142 LEU143 LEU144 PRO145 LYS146 ARG147 GLU148 LEU149 HIS150 GLY151 GLN152 ASN153 PRO154 VAL155 VAL156 THR157 PRO158 VAL159 ASN160 LYS161 GLN162 PHE163 LEU164 SER165 GLN166 PHE167 GLU168 MET169 GLN170 SER171 ARG172 LYS173
Unit 4 ILE81 ALA82 LEU83 TYR84 ILE85 GLY86 ASN87 LEU88 THR89 TRP90 TRP91 THR92 THR93 ASP94 GLU95 ASP96 LEU97 THR98 GLU99 ALA100 VAL101 HIS102 SER103 LEU104 GLY105 VAL106 ASN107 ASP108 ILE109 LEU110 GLU111 ILE112 LYS113 PHE114 PHE115 GLU116 ASN117 ARG118 ALA119 ASN120 GLY121 GLN122 SER123 LYS124 GLY125 PHE126 ALA127 LEU128 VAL129 GLY130 VAL131 GLY132 SER133 GLU134 ALA135 SER136 SER137 LYS138 LYS139 LEU140 MET141 ASP142 LEU143 LEU144 PRO145 LYS146 ARG147 GLU148 LEU149 HIS150 GLY151 GLN152 ASN153 PRO154 VAL155 VAL156 THR157 PRO158 VAL159 ASN160 LYS161 GLN162 PHE163 LEU164 SER165 GLN166 PHE167 GLU168 MET169 GLN170 SER171 ARG172

Nucleic acids
Unit 5 U1 U2 G3 U4 A5
Unit 6 U1 U2 G3 U4 A5

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany