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Title | TERNARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-N7 DNA POLYMERASE IV AND INCOMING DCTP | |
Keywords | TERNARY COMPLEX OF DPO4-DNA-DCTP, DNA POLYMERASE, DNA ADDUCT TRANSFERASE-DNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3PW7 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | DNA POLYMERASE IV | A | 343 | 2764 | 0 |
2 | Other macromolecule | DNA (5'-D(*AP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP 3') | B | 16 | 315 | 0 |
3 | Other macromolecule | C | 12 | 254 | 0 | |
4 | Protein | DNA POLYMERASE IV | E | 343 | 2764 | 0 |
5 | Other macromolecule | DNA (5'-D(*AP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP 3') | F | 16 | 315 | 0 |
6 | Other macromolecule | G | 12 | 254 | 0 | |
7 | Ligand | DNA POLYMERASE IV | A | 2 | 0 | 29 |
8 | Ligand | DNA (5'-D(*AP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP 3') | B | 1 | 0 | 24 |
9 | Ligand | DNA POLYMERASE IV | E | 2 | 0 | 29 |
10 | Ligand | DNA (5'-D(*AP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP 3') | F | 1 | 0 | 24 |
11 | Water | 85 | 0 | 85 | ||
total | 833 | 6666 | 191 |
Unit 1 | HIS2 HIS3 MET4 ILE5 VAL6 LEU7 PHE8 VAL9 ASP10 PHE11 ASP12 TYR13 PHE14 TYR15 ALA16 GLN17 VAL18 GLU19 GLU20 VAL21 LEU22 ASN23 PRO24 SER25 LEU26 LYS27 GLY28 LYS29 PRO30 VAL31 VAL32 VAL33 CYS34 VAL35 PHE36 SER37 GLY38 ARG39 PHE40 GLU41 ASP42 SER43 GLY44 ALA45 VAL46 ALA47 THR48 ALA49 ASN50 TYR51 GLU52 ALA53 ARG54 LYS55 PHE56 GLY57 VAL58 LYS59 ALA60 GLY61 ILE62 PRO63 ILE64 VAL65 GLU66 ALA67 LYS68 LYS69 ILE70 LEU71 PRO72 ASN73 ALA74 VAL75 TYR76 LEU77 PRO78 MET79 ARG80 LYS81 GLU82 VAL83 TYR84 GLN85 GLN86 VAL87 SER88 SER89 ARG90 ILE91 MET92 ASN93 LEU94 LEU95 ARG96 GLU97 TYR98 SER99 GLU100 LYS101 ILE102 GLU103 ILE104 ALA105 SER106 ILE107 ASP108 GLU109 ALA110 TYR111 LEU112 ASP113 ILE114 SER115 ASP116 LYS117 VAL118 ARG119 ASP120 TYR121 ARG122 GLU123 ALA124 TYR125 ASN126 LEU127 GLY128 LEU129 GLU130 ILE131 LYS132 ASN133 LYS134 ILE135 LEU136 GLU137 LYS138 GLU139 LYS140 ILE141 THR142 VAL143 THR144 VAL145 GLY146 ILE147 SER148 LYS149 ASN150 LYS151 VAL152 PHE153 ALA154 LYS155 ILE156 ALA157 ALA158 ASP159 MET160 ALA161 LYS162 PRO163 ASN164 GLY165 ILE166 LYS167 VAL168 ILE169 ASP170 ASP171 GLU172 GLU173 VAL174 LYS175 ARG176 LEU177 ILE178 ARG179 GLU180 LEU181 ASP182 ILE183 ALA184 ASP185 VAL186 PRO187 GLY188 ILE189 GLY190 ASN191 ILE192 THR193 ALA194 GLU195 LYS196 LEU197 LYS198 LYS199 LEU200 GLY201 ILE202 ASN203 LYS204 LEU205 VAL206 ASP207 THR208 LEU209 SER210 ILE211 GLU212 PHE213 ASP214 LYS215 LEU216 LYS217 GLY218 MET219 ILE220 GLY221 GLU222 ALA223 LYS224 ALA225 LYS226 TYR227 LEU228 ILE229 SER230 LEU231 ALA232 ARG233 ASP234 GLU235 TYR236 ASN237 GLU238 PRO239 ILE240 ARG241 THR242 ARG243 VAL244 ARG245 LYS246 SER247 ILE248 GLY249 ARG250 ILE251 VAL252 THR253 MET254 LYS255 ARG256 ASN257 SER258 ARG259 ASN260 LEU261 GLU262 GLU263 ILE264 LYS265 PRO266 TYR267 LEU268 PHE269 ARG270 ALA271 ILE272 GLU273 GLU274 SER275 TYR276 TYR277 LYS278 LEU279 ASP280 LYS281 ARG282 ILE283 PRO284 LYS285 ALA286 ILE287 HIS288 VAL289 VAL290 ALA291 VAL292 THR293 GLU294 ASP295 LEU296 ASP297 ILE298 VAL299 SER300 ARG301 GLY302 ARG303 THR304 PHE305 PRO306 HIS307 GLY308 ILE309 SER310 LYS311 GLU312 THR313 ALA314 TYR315 SER316 GLU317 SER318 VAL319 LYS320 LEU321 LEU322 GLN323 LYS324 ILE325 LEU326 GLU327 GLU328 ASP329 GLU330 ARG331 LYS332 ILE333 ARG334 ARG335 ILE336 GLY337 VAL338 ARG339 PHE340 SER341 LYS342 PHE343 ILE344 |
Unit 4 | HIS2 HIS3 MET4 ILE5 VAL6 LEU7 PHE8 VAL9 ASP10 PHE11 ASP12 TYR13 PHE14 TYR15 ALA16 GLN17 VAL18 GLU19 GLU20 VAL21 LEU22 ASN23 PRO24 SER25 LEU26 LYS27 GLY28 LYS29 PRO30 VAL31 VAL32 VAL33 CYS34 VAL35 PHE36 SER37 GLY38 ARG39 PHE40 GLU41 ASP42 SER43 GLY44 ALA45 VAL46 ALA47 THR48 ALA49 ASN50 TYR51 GLU52 ALA53 ARG54 LYS55 PHE56 GLY57 VAL58 LYS59 ALA60 GLY61 ILE62 PRO63 ILE64 VAL65 GLU66 ALA67 LYS68 LYS69 ILE70 LEU71 PRO72 ASN73 ALA74 VAL75 TYR76 LEU77 PRO78 MET79 ARG80 LYS81 GLU82 VAL83 TYR84 GLN85 GLN86 VAL87 SER88 SER89 ARG90 ILE91 MET92 ASN93 LEU94 LEU95 ARG96 GLU97 TYR98 SER99 GLU100 LYS101 ILE102 GLU103 ILE104 ALA105 SER106 ILE107 ASP108 GLU109 ALA110 TYR111 LEU112 ASP113 ILE114 SER115 ASP116 LYS117 VAL118 ARG119 ASP120 TYR121 ARG122 GLU123 ALA124 TYR125 ASN126 LEU127 GLY128 LEU129 GLU130 ILE131 LYS132 ASN133 LYS134 ILE135 LEU136 GLU137 LYS138 GLU139 LYS140 ILE141 THR142 VAL143 THR144 VAL145 GLY146 ILE147 SER148 LYS149 ASN150 LYS151 VAL152 PHE153 ALA154 LYS155 ILE156 ALA157 ALA158 ASP159 MET160 ALA161 LYS162 PRO163 ASN164 GLY165 ILE166 LYS167 VAL168 ILE169 ASP170 ASP171 GLU172 GLU173 VAL174 LYS175 ARG176 LEU177 ILE178 ARG179 GLU180 LEU181 ASP182 ILE183 ALA184 ASP185 VAL186 PRO187 GLY188 ILE189 GLY190 ASN191 ILE192 THR193 ALA194 GLU195 LYS196 LEU197 LYS198 LYS199 LEU200 GLY201 ILE202 ASN203 LYS204 LEU205 VAL206 ASP207 THR208 LEU209 SER210 ILE211 GLU212 PHE213 ASP214 LYS215 LEU216 LYS217 GLY218 MET219 ILE220 GLY221 GLU222 ALA223 LYS224 ALA225 LYS226 TYR227 LEU228 ILE229 SER230 LEU231 ALA232 ARG233 ASP234 GLU235 TYR236 ASN237 GLU238 PRO239 ILE240 ARG241 THR242 ARG243 VAL244 ARG245 LYS246 SER247 ILE248 GLY249 ARG250 ILE251 VAL252 THR253 MET254 LYS255 ARG256 ASN257 SER258 ARG259 ASN260 LEU261 GLU262 GLU263 ILE264 LYS265 PRO266 TYR267 LEU268 PHE269 ARG270 ALA271 ILE272 GLU273 GLU274 SER275 TYR276 TYR277 LYS278 LEU279 ASP280 LYS281 ARG282 ILE283 PRO284 LYS285 ALA286 ILE287 HIS288 VAL289 VAL290 ALA291 VAL292 THR293 GLU294 ASP295 LEU296 ASP297 ILE298 VAL299 SER300 ARG301 GLY302 ARG303 THR304 PHE305 PRO306 HIS307 GLY308 ILE309 SER310 LYS311 GLU312 THR313 ALA314 TYR315 SER316 GLU317 SER318 VAL319 LYS320 LEU321 LEU322 GLN323 LYS324 ILE325 LEU326 GLU327 GLU328 ASP329 GLU330 ARG331 LYS332 ILE333 ARG334 ARG335 ILE336 GLY337 VAL338 ARG339 PHE340 SER341 LYS342 PHE343 ILE344 |
Unit 2 | DA371 DT372 DT373 DG374 DA375 DA376 DT377 DC378 DC379 DT380 DT381 DC382 DC383 DC384 DC385 DC386 |
Unit 3 | DG347 DG348 DG349 DG350 DG351 DA352 DA353 DG354 DG355 DA356 DT357 DT358 |
Unit 5 | DA371 DT372 DT373 DG374 DA375 DA376 DT377 DC378 DC379 DT380 DT381 DC382 DC383 DC384 DC385 DC386 |
Unit 6 | DG347 DG348 DG349 DG350 DG351 DA352 DA353 DG354 DG355 DA356 DT357 DT358 |
Unit 7 | CA345 DCP400 |
Unit 8 | AFN387 |
Unit 9 | CA345 DCP400 |
Unit 10 | AFN387 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |