3PU3 - Sequence, Chains, Asymmetric and Biological Units

• Title: PHF2 JUMONJI DOMAIN-NOG COMPLEX
• Keywords: ALPHA-KETOGLUTARATE-FE2+ DEPENDENT DIOXYGENASES, HISTONE TAI PROTEIN, PROTEIN BINDING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3PU3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PHD FINGER PROTEIN 2	A	363	2856	0
2	Protein	PHD FINGER PROTEIN 2	B	361	2817	0
3	Ligand	PHD FINGER PROTEIN 2	A	24	0	104
4	Ligand	PHD FINGER PROTEIN 2	B	22	0	94
5	Water			373	0	373
total				1143	5673	571

Proteins

Unit 1

LYS 80 PRO 81 VAL 82 GLN 83 ASN 84 GLY 85 SER 86 GLN 87 LEU 88 PHE 89 ILE 90 LYS 91 GLU 92 LEU 93 ARG 94 SER 95 ARG 96 THR 97 PHE 98 PRO 99 SER 100 ALA 101 GLU 102 ASP 103 VAL 104 VAL 105 ALA 106 ARG 107 VAL 108 PRO 109 GLY 110 SER 111 GLN 112 LEU 113 THR 114 LEU 115 GLY 116 TYR 117 MET 118 GLU 119 GLU 120 HIS 121 GLY 122 PHE 123 THR 124 GLU 125 PRO 126 ILE 127 LEU 128 VAL 129 PRO 130 LYS 131 LYS 132 ASP 133 GLY 134 LEU 135 GLY 136 LEU 137 ALA 138 VAL 139 PRO 140 ALA 141 PRO 142 THR 143 PHE 144 TYR 145 VAL 146 SER 147 ASP 148 VAL 149 GLU 150 ASN 151 TYR 152 VAL 153 GLY 154 PRO 155 GLU 156 ARG 157 SER 158 VAL 159 ASP 160 VAL 161 THR 162 ASP 163 VAL 164 THR 165 LYS 166 GLN 167 LYS 168 ASP 169 CYS 170 LYS 171 MET 172 LYS 173 LEU 174 LYS 175 GLU 176 PHE 177 VAL 178 ASP 179 TYR 180 TYR 181 TYR 182 SER 183 THR 184 ASN 185 ARG 186 LYS 187 ARG 188 VAL 189 LEU 190 ASN 191 VAL 192 THR 193 ASN 194 LEU 195 GLU 196 PHE 197 SER 198 ASP 199 THR 200 ARG 201 MET 202 SER 203 SER 204 PHE 205 VAL 206 GLU 207 PRO 208 PRO 209 ASP 210 ILE 211 VAL 212 LYS 213 LYS 214 LEU 215 SER 216 TRP 217 VAL 218 GLU 219 ASN 220 TYR 221 TRP 222 PRO 223 ASP 224 ASP 225 ALA 226 LEU 227 LEU 228 ALA 229 LYS 230 PRO 231 LYS 232 VAL 233 THR 234 LYS 235 TYR 236 CYS 237 LEU 238 ILE 239 CYS 240 VAL 241 LYS 242 ASP 243 SER 244 TYR 245 THR 246 ASP 247 PHE 248 HIS 249 ILE 250 ASP 251 SER 252 GLY 253 GLY 254 ALA 255 SER 256 ALA 257 TRP 258 TYR 259 HIS 260 VAL 261 LEU 262 LYS 263 GLY 264 GLU 265 LYS 266 THR 267 PHE 268 TYR 269 LEU 270 ILE 271 ARG 272 PRO 273 ALA 274 SER 275 ALA 276 ASN 277 ILE 278 SER 279 LEU 280 TYR 281 GLU 282 ARG 283 TRP 284 ARG 285 SER 286 ALA 287 SER 288 ASN 289 HIS 290 SER 291 GLU 292 MET 293 PHE 294 PHE 295 ALA 296 ASP 297 GLN 298 VAL 299 ASP 300 LYS 301 CYS 302 TYR 303 LYS 304 CYS 305 ILE 306 VAL 307 LYS 308 GLN 309 GLY 310 GLN 311 THR 312 LEU 313 PHE 314 ILE 315 PRO 316 SER 317 GLY 318 TRP 319 ILE 320 TYR 321 ALA 322 THR 323 LEU 324 THR 325 PRO 326 VAL 327 ASP 328 CYS 329 LEU 330 ALA 331 PHE 332 ALA 333 GLY 334 HIS 335 PHE 336 LEU 337 HIS 338 SER 339 LEU 340 SER 341 VAL 342 GLU 343 MET 344 GLN 345 MET 346 ARG 347 ALA 348 TYR 349 GLU 350 VAL 351 GLU 352 ARG 353 ARG 354 LEU 355 LYS 356 LEU 357 GLY 358 SER 359 LEU 360 THR 361 GLN 362 PHE 363 PRO 364 ASN 365 PHE 366 GLU 367 THR 368 ALA 369 CYS 370 TRP 371 TYR 372 MET 373 GLY 374 LYS 375 HIS 376 LEU 377 LEU 378 GLU 379 ALA 380 PHE 381 LYS 382 GLY 383 SER 384 HIS 385 LYS 386 SER 387 GLY 388 LYS 389 GLN 390 LEU 391 PRO 392 PRO 393 HIS 394 LEU 395 VAL 396 GLN 397 GLY 398 ALA 399 LYS 400 ILE 401 LEU 402 ASN 403 GLY 404 ALA 405 PHE 406 ARG 407 SER 408 TRP 409 THR 410 LYS 411 LYS 412 LEU 415 ALA 416 GLU 417 HIS 418 GLU 419 ASP 420 GLU 421 LEU 422 PRO 423 GLU 424 HIS 425 PHE 426 LYS 427 PRO 428 SER 429 GLN 430 LEU 431 ILE 432 LYS 433 ASP 434 LEU 435 ALA 436 LYS 437 GLU 438 ILE 439 ARG 440 LEU 441 SER 442 GLU 443 ASN 444

Unit 2

GLN 83 ASN 84 GLY 85 SER 86 GLN 87 LEU 88 PHE 89 ILE 90 LYS 91 GLU 92 LEU 93 ARG 94 SER 95 ARG 96 THR 97 PHE 98 PRO 99 SER 100 ALA 101 GLU 102 ASP 103 VAL 104 VAL 105 ALA 106 ARG 107 VAL 108 PRO 109 GLY 110 SER 111 GLN 112 LEU 113 THR 114 LEU 115 GLY 116 TYR 117 MET 118 GLU 119 GLU 120 HIS 121 GLY 122 PHE 123 THR 124 GLU 125 PRO 126 ILE 127 LEU 128 VAL 129 PRO 130 LYS 131 LYS 132 ASP 133 GLY 134 LEU 135 GLY 136 LEU 137 ALA 138 VAL 139 PRO 140 ALA 141 PRO 142 THR 143 PHE 144 TYR 145 VAL 146 SER 147 ASP 148 VAL 149 GLU 150 ASN 151 TYR 152 VAL 153 GLY 154 PRO 155 GLU 156 ARG 157 SER 158 VAL 159 ASP 160 VAL 161 THR 162 ASP 163 VAL 164 THR 165 LYS 166 GLN 167 LYS 168 ASP 169 CYS 170 LYS 171 MET 172 LYS 173 LEU 174 LYS 175 GLU 176 PHE 177 VAL 178 ASP 179 TYR 180 TYR 181 TYR 182 SER 183 THR 184 ASN 185 ARG 186 LYS 187 ARG 188 VAL 189 LEU 190 ASN 191 VAL 192 THR 193 ASN 194 LEU 195 GLU 196 PHE 197 SER 198 ASP 199 THR 200 ARG 201 MET 202 SER 203 SER 204 PHE 205 VAL 206 GLU 207 PRO 208 PRO 209 ASP 210 ILE 211 VAL 212 LYS 213 LYS 214 LEU 215 SER 216 TRP 217 VAL 218 GLU 219 ASN 220 TYR 221 TRP 222 PRO 223 ASP 224 ASP 225 ALA 226 LEU 227 LEU 228 ALA 229 LYS 230 PRO 231 LYS 232 VAL 233 THR 234 LYS 235 TYR 236 CYS 237 LEU 238 ILE 239 CYS 240 VAL 241 LYS 242 ASP 243 SER 244 TYR 245 THR 246 ASP 247 PHE 248 HIS 249 ILE 250 ASP 251 SER 252 GLY 253 GLY 254 ALA 255 SER 256 ALA 257 TRP 258 TYR 259 HIS 260 VAL 261 LEU 262 LYS 263 GLY 264 GLU 265 LYS 266 THR 267 PHE 268 TYR 269 LEU 270 ILE 271 ARG 272 PRO 273 ALA 274 SER 275 ALA 276 ASN 277 ILE 278 SER 279 LEU 280 TYR 281 GLU 282 ARG 283 TRP 284 ARG 285 SER 286 ALA 287 SER 288 ASN 289 HIS 290 SER 291 GLU 292 MET 293 PHE 294 PHE 295 ALA 296 ASP 297 GLN 298 VAL 299 ASP 300 LYS 301 CYS 302 TYR 303 LYS 304 CYS 305 ILE 306 VAL 307 LYS 308 GLN 309 GLY 310 GLN 311 THR 312 LEU 313 PHE 314 ILE 315 PRO 316 SER 317 GLY 318 TRP 319 ILE 320 TYR 321 ALA 322 THR 323 LEU 324 THR 325 PRO 326 VAL 327 ASP 328 CYS 329 LEU 330 ALA 331 PHE 332 ALA 333 GLY 334 HIS 335 PHE 336 LEU 337 HIS 338 SER 339 LEU 340 SER 341 VAL 342 GLU 343 MET 344 GLN 345 MET 346 ARG 347 ALA 348 TYR 349 GLU 350 VAL 351 GLU 352 ARG 353 ARG 354 LEU 355 LYS 356 LEU 357 GLY 358 SER 359 LEU 360 THR 361 GLN 362 PHE 363 PRO 364 ASN 365 PHE 366 GLU 367 THR 368 ALA 369 CYS 370 TRP 371 TYR 372 MET 373 GLY 374 LYS 375 HIS 376 LEU 377 LEU 378 GLU 379 ALA 380 PHE 381 LYS 382 GLY 383 SER 384 HIS 385 LYS 386 SER 387 GLY 388 LYS 389 GLN 390 LEU 391 PRO 392 PRO 393 HIS 394 LEU 395 VAL 396 GLN 397 GLY 398 ALA 399 LYS 400 ILE 401 LEU 402 ASN 403 GLY 404 ALA 405 PHE 406 ARG 407 SER 408 TRP 409 THR 410 LYS 411 LYS 412 GLN 413 ALA 414 ALA 416 GLU 417 HIS 418 GLU 419 ASP 420 GLU 421 LEU 422 PRO 423 GLU 424 HIS 425 PHE 426 LYS 427 PRO 428 SER 429 GLN 430 LEU 431 ILE 432 LYS 433 ASP 434 LEU 435 ALA 436 LYS 437 GLU 438 ILE 439 ARG 440 LEU 441 SER 442 GLU 443 ASN 444

Ligands

Unit 3	OGA 1 EDO 5 EDO 6 EDO 9 EDO 10 EDO 11 GOL 12 EDO 14 EDO 16 EDO 17 EDO 18 EDO 19 EDO 20 EDO 23 EDO 24 EDO 26 EDO 27 EDO 33 EDO 34 EDO 35 EDO 36 EDO 37 EDO 42 EDO 46
Unit 4	EDO 1 OGA 2 EDO 4 EDO 7 EDO 13 EDO 21 EDO 22 EDO 28 EDO 29 EDO 30 EDO 31 EDO 38 EDO 39 EDO 40 EDO 41 EDO 43 EDO 44 EDO 45 EDO 47 EDO 48 EDO 49 EDO 452