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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENAS FROM METHANOCALDOCOCCUS JANNASCHII DSM 2661
Keywords STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, P BIOLOGY, OXIDOREDUCTASE, NEW YORK STRUCTURAL GENOMICS RESEA CONSORTIUM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3PQA     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LACTALDEHYDE DEHYDROGENASE  A 456 3533 0
2  Protein   LACTALDEHYDE DEHYDROGENASE  B 458 3552 0
3  Protein   LACTALDEHYDE DEHYDROGENASE  C 455 3522 0
4  Protein   LACTALDEHYDE DEHYDROGENASE  D 456 3530 0
5  Ligand   LACTALDEHYDE DEHYDROGENASE  A 2 0 10
6  Ligand   LACTALDEHYDE DEHYDROGENASE  B 1 0 5
7  Ligand   LACTALDEHYDE DEHYDROGENASE  C 2 0 10
8  Ligand   LACTALDEHYDE DEHYDROGENASE  D 2 0 10
9 Water     1355 0 1355
total       3187 14137 1390
Proteins
Unit 1 ILE9 ASN10 ARG11 GLU12 ASP13 MET14 ASP15 VAL16 ILE17 ASN18 PRO19 TYR20 SER21 LEU22 GLU23 VAL24 ILE25 LYS26 LYS27 ILE28 PRO29 ALA30 LEU31 SER32 ARG33 GLU34 GLU35 ALA36 LYS37 GLU38 ALA39 ILE40 ASP41 THR42 ALA43 GLU44 LYS45 TYR46 LYS47 GLU48 VAL49 MET50 LYS51 ASN52 LEU53 PRO54 ILE55 THR56 LYS57 ARG58 TYR59 ASN60 ILE61 LEU62 MET63 ASN64 ILE65 ALA66 LYS67 GLN68 ILE69 LYS70 GLU71 LYS72 LYS73 GLU74 GLU75 LEU76 ALA77 LYS78 ILE79 LEU80 ALA81 ILE82 ASP83 ALA84 GLY85 LYS86 PRO87 ILE88 LYS89 GLN90 ALA91 ARG92 VAL93 GLU94 VAL95 GLU96 ARG97 SER98 ILE99 GLY100 THR101 PHE102 LYS103 LEU104 ALA105 ALA106 PHE107 TYR108 VAL109 LYS110 GLU111 HIS112 ARG113 ASP114 GLU115 VAL116 ILE117 PRO118 SER119 ASP120 ASP121 ARG122 LEU123 ILE124 PHE125 THR126 ARG127 ARG128 GLU129 PRO130 VAL131 GLY132 ILE133 VAL134 GLY135 ALA136 ILE137 THR138 PRO139 PHE140 ASN141 PHE142 PRO143 LEU144 ASN145 LEU146 SER147 ALA148 HIS149 LYS150 ILE151 ALA152 PRO153 ALA154 ILE155 ALA156 THR157 GLY158 ASN159 VAL160 ILE161 VAL162 HIS163 HIS164 PRO165 SER166 SER167 LYS168 ALA169 PRO170 LEU171 VAL172 CYS173 ILE174 GLU175 LEU176 ALA177 LYS178 ILE179 ILE180 GLU181 ASN182 ALA183 LEU184 LYS185 LYS186 TYR187 ASN188 VAL189 PRO190 LEU191 GLY192 VAL193 TYR194 ASN195 LEU196 LEU197 THR198 GLY199 ALA200 GLY201 GLU202 VAL203 VAL204 GLY205 ASP206 GLU207 ILE208 VAL209 VAL210 ASN211 GLU212 LYS213 VAL214 ASN215 MET216 ILE217 SER218 PHE219 THR220 GLY221 SER222 SER223 LYS224 VAL225 GLY226 GLU227 LEU228 ILE229 THR230 LYS231 LYS232 ALA233 GLY234 PHE235 LYS236 LYS237 ILE238 ALA239 LEU240 GLU241 LEU242 GLY243 GLY244 VAL245 ASN246 PRO247 ASN248 ILE249 VAL250 LEU251 LYS252 ASP253 ALA254 ASP255 LEU256 ASN257 LYS258 ALA259 VAL260 ASN261 ALA262 LEU263 ILE264 LYS265 GLY266 SER267 PHE268 ILE269 TYR270 ALA271 GLY272 GLN273 VAL274 CYS275 ILE276 SER277 VAL278 GLY279 MET280 ILE281 LEU282 VAL283 ASP284 GLU285 SER286 ILE287 ALA288 ASP289 LYS290 PHE291 ILE292 GLU293 MET294 PHE295 VAL296 ASN297 LYS298 ALA299 LYS300 VAL301 LEU302 ASN303 VAL304 GLY305 ASN306 PRO307 LEU308 ASP309 GLU310 LYS311 THR312 ASP313 VAL314 GLY315 PRO316 LEU317 ILE318 SER319 VAL320 GLU321 HIS322 ALA323 GLU324 TRP325 VAL326 GLU327 LYS328 VAL329 VAL330 GLU331 LYS332 ALA333 ILE334 ASP335 GLU336 GLY337 GLY338 LYS339 LEU340 LEU341 LEU342 GLY343 GLY344 LYS345 ARG346 ASP347 LYS348 ALA349 LEU350 PHE351 TYR352 PRO353 THR354 ILE355 LEU356 GLU357 VAL358 ASP359 ARG360 ASP361 ASN362 ILE363 LEU364 CYS365 LYS366 THR367 GLU368 THR369 PHE370 ALA371 PRO372 VAL373 ILE374 PRO375 ILE376 ILE377 ARG378 THR379 ASN380 GLU381 GLU382 GLU383 MET384 ILE385 ASP386 ILE387 ALA388 ASN389 SER390 THR391 GLU392 TYR393 GLY394 LEU395 HIS396 SER397 ALA398 ILE399 PHE400 THR401 ASN402 ASP403 ILE404 ASN405 LYS406 SER407 LEU408 LYS409 PHE410 ALA411 GLU412 ASN413 LEU414 GLU415 PHE416 GLY417 GLY418 VAL419 VAL420 ILE421 ASN422 ASP423 SER424 SER425 LEU426 PHE427 ARG428 GLN429 ASP430 ASN431 MET432 PRO433 PHE434 GLY435 GLY436 VAL437 LYS438 LYS439 SER440 GLY441 LEU442 GLY443 ARG444 GLU445 GLY446 VAL447 LYS448 TYR449 ALA450 MET451 GLU452 GLU453 MET454 SER455 ASN456 ILE457 LYS458 THR459 ILE460 ILE461 ILE462 SER463 LYS464
Unit 2 TRP8 ILE9 ASN10 ARG11 GLU12 ASP13 MET14 ASP15 VAL16 ILE17 ASN18 PRO19 TYR20 SER21 LEU22 GLU23 VAL24 ILE25 LYS26 LYS27 ILE28 PRO29 ALA30 LEU31 SER32 ARG33 GLU34 GLU35 ALA36 LYS37 GLU38 ALA39 ILE40 ASP41 THR42 ALA43 GLU44 LYS45 TYR46 LYS47 GLU48 VAL49 MET50 LYS51 ASN52 LEU53 PRO54 ILE55 THR56 LYS57 ARG58 TYR59 ASN60 ILE61 LEU62 MET63 ASN64 ILE65 ALA66 LYS67 GLN68 ILE69 LYS70 GLU71 LYS72 LYS73 GLU74 GLU75 LEU76 ALA77 LYS78 ILE79 LEU80 ALA81 ILE82 ASP83 ALA84 GLY85 LYS86 PRO87 ILE88 LYS89 GLN90 ALA91 ARG92 VAL93 GLU94 VAL95 GLU96 ARG97 SER98 ILE99 GLY100 THR101 PHE102 LYS103 LEU104 ALA105 ALA106 PHE107 TYR108 VAL109 LYS110 GLU111 HIS112 ARG113 ASP114 GLU115 VAL116 ILE117 PRO118 SER119 ASP120 ASP121 ARG122 LEU123 ILE124 PHE125 THR126 ARG127 ARG128 GLU129 PRO130 VAL131 GLY132 ILE133 VAL134 GLY135 ALA136 ILE137 THR138 PRO139 PHE140 ASN141 PHE142 PRO143 LEU144 ASN145 LEU146 SER147 ALA148 HIS149 LYS150 ILE151 ALA152 PRO153 ALA154 ILE155 ALA156 THR157 GLY158 ASN159 VAL160 ILE161 VAL162 HIS163 HIS164 PRO165 SER166 SER167 LYS168 ALA169 PRO170 LEU171 VAL172 CYS173 ILE174 GLU175 LEU176 ALA177 LYS178 ILE179 ILE180 GLU181 ASN182 ALA183 LEU184 LYS185 LYS186 TYR187 ASN188 VAL189 PRO190 LEU191 GLY192 VAL193 TYR194 ASN195 LEU196 LEU197 THR198 GLY199 ALA200 GLY201 GLU202 VAL203 VAL204 GLY205 ASP206 GLU207 ILE208 VAL209 VAL210 ASN211 GLU212 LYS213 VAL214 ASN215 MET216 ILE217 SER218 PHE219 THR220 GLY221 SER222 SER223 LYS224 VAL225 GLY226 GLU227 LEU228 ILE229 THR230 LYS231 LYS232 ALA233 GLY234 PHE235 LYS236 LYS237 ILE238 ALA239 LEU240 GLU241 LEU242 GLY243 GLY244 VAL245 ASN246 PRO247 ASN248 ILE249 VAL250 LEU251 LYS252 ASP253 ALA254 ASP255 LEU256 ASN257 LYS258 ALA259 VAL260 ASN261 ALA262 LEU263 ILE264 LYS265 GLY266 SER267 PHE268 ILE269 TYR270 ALA271 GLY272 GLN273 VAL274 CYS275 ILE276 SER277 VAL278 GLY279 MET280 ILE281 LEU282 VAL283 ASP284 GLU285 SER286 ILE287 ALA288 ASP289 LYS290 PHE291 ILE292 GLU293 MET294 PHE295 VAL296 ASN297 LYS298 ALA299 LYS300 VAL301 LEU302 ASN303 VAL304 GLY305 ASN306 PRO307 LEU308 ASP309 GLU310 LYS311 THR312 ASP313 VAL314 GLY315 PRO316 LEU317 ILE318 SER319 VAL320 GLU321 HIS322 ALA323 GLU324 TRP325 VAL326 GLU327 LYS328 VAL329 VAL330 GLU331 LYS332 ALA333 ILE334 ASP335 GLU336 GLY337 GLY338 LYS339 LEU340 LEU341 LEU342 GLY343 GLY344 LYS345 ARG346 ASP347 LYS348 ALA349 LEU350 PHE351 TYR352 PRO353 THR354 ILE355 LEU356 GLU357 VAL358 ASP359 ARG360 ASP361 ASN362 ILE363 LEU364 CYS365 LYS366 THR367 GLU368 THR369 PHE370 ALA371 PRO372 VAL373 ILE374 PRO375 ILE376 ILE377 ARG378 THR379 ASN380 GLU381 GLU382 GLU383 MET384 ILE385 ASP386 ILE387 ALA388 ASN389 SER390 THR391 GLU392 TYR393 GLY394 LEU395 HIS396 SER397 ALA398 ILE399 PHE400 THR401 ASN402 ASP403 ILE404 ASN405 LYS406 SER407 LEU408 LYS409 PHE410 ALA411 GLU412 ASN413 LEU414 GLU415 PHE416 GLY417 GLY418 VAL419 VAL420 ILE421 ASN422 ASP423 SER424 SER425 LEU426 PHE427 ARG428 GLN429 ASP430 ASN431 MET432 PRO433 PHE434 GLY435 GLY436 VAL437 LYS438 LYS439 SER440 GLY441 LEU442 GLY443 ARG444 GLU445 GLY446 VAL447 LYS448 TYR449 ALA450 MET451 GLU452 GLU453 MET454 SER455 ASN456 ILE457 LYS458 THR459 ILE460 ILE461 ILE462 SER463 LYS464 ALA465
Unit 3 ARG11 GLU12 ASP13 MET14 ASP15 VAL16 ILE17 ASN18 PRO19 TYR20 SER21 LEU22 GLU23 VAL24 ILE25 LYS26 LYS27 ILE28 PRO29 ALA30 LEU31 SER32 ARG33 GLU34 GLU35 ALA36 LYS37 GLU38 ALA39 ILE40 ASP41 THR42 ALA43 GLU44 LYS45 TYR46 LYS47 GLU48 VAL49 MET50 LYS51 ASN52 LEU53 PRO54 ILE55 THR56 LYS57 ARG58 TYR59 ASN60 ILE61 LEU62 MET63 ASN64 ILE65 ALA66 LYS67 GLN68 ILE69 LYS70 GLU71 LYS72 LYS73 GLU74 GLU75 LEU76 ALA77 LYS78 ILE79 LEU80 ALA81 ILE82 ASP83 ALA84 GLY85 LYS86 PRO87 ILE88 LYS89 GLN90 ALA91 ARG92 VAL93 GLU94 VAL95 GLU96 ARG97 SER98 ILE99 GLY100 THR101 PHE102 LYS103 LEU104 ALA105 ALA106 PHE107 TYR108 VAL109 LYS110 GLU111 HIS112 ARG113 ASP114 GLU115 VAL116 ILE117 PRO118 SER119 ASP120 ASP121 ARG122 LEU123 ILE124 PHE125 THR126 ARG127 ARG128 GLU129 PRO130 VAL131 GLY132 ILE133 VAL134 GLY135 ALA136 ILE137 THR138 PRO139 PHE140 ASN141 PHE142 PRO143 LEU144 ASN145 LEU146 SER147 ALA148 HIS149 LYS150 ILE151 ALA152 PRO153 ALA154 ILE155 ALA156 THR157 GLY158 ASN159 VAL160 ILE161 VAL162 HIS163 HIS164 PRO165 SER166 SER167 LYS168 ALA169 PRO170 LEU171 VAL172 CYS173 ILE174 GLU175 LEU176 ALA177 LYS178 ILE179 ILE180 GLU181 ASN182 ALA183 LEU184 LYS185 LYS186 TYR187 ASN188 VAL189 PRO190 LEU191 GLY192 VAL193 TYR194 ASN195 LEU196 LEU197 THR198 GLY199 ALA200 GLY201 GLU202 VAL203 VAL204 GLY205 ASP206 GLU207 ILE208 VAL209 VAL210 ASN211 GLU212 LYS213 VAL214 ASN215 MET216 ILE217 SER218 PHE219 THR220 GLY221 SER222 SER223 LYS224 VAL225 GLY226 GLU227 LEU228 ILE229 THR230 LYS231 LYS232 ALA233 GLY234 PHE235 LYS236 LYS237 ILE238 ALA239 LEU240 GLU241 LEU242 GLY243 GLY244 VAL245 ASN246 PRO247 ASN248 ILE249 VAL250 LEU251 LYS252 ASP253 ALA254 ASP255 LEU256 ASN257 LYS258 ALA259 VAL260 ASN261 ALA262 LEU263 ILE264 LYS265 GLY266 SER267 PHE268 ILE269 TYR270 ALA271 GLY272 GLN273 VAL274 CYS275 ILE276 SER277 VAL278 GLY279 MET280 ILE281 LEU282 VAL283 ASP284 GLU285 SER286 ILE287 ALA288 ASP289 LYS290 PHE291 ILE292 GLU293 MET294 PHE295 VAL296 ASN297 LYS298 ALA299 LYS300 VAL301 LEU302 ASN303 VAL304 GLY305 ASN306 PRO307 LEU308 ASP309 GLU310 LYS311 THR312 ASP313 VAL314 GLY315 PRO316 LEU317 ILE318 SER319 VAL320 GLU321 HIS322 ALA323 GLU324 TRP325 VAL326 GLU327 LYS328 VAL329 VAL330 GLU331 LYS332 ALA333 ILE334 ASP335 GLU336 GLY337 GLY338 LYS339 LEU340 LEU341 LEU342 GLY343 GLY344 LYS345 ARG346 ASP347 LYS348 ALA349 LEU350 PHE351 TYR352 PRO353 THR354 ILE355 LEU356 GLU357 VAL358 ASP359 ARG360 ASP361 ASN362 ILE363 LEU364 CYS365 LYS366 THR367 GLU368 THR369 PHE370 ALA371 PRO372 VAL373 ILE374 PRO375 ILE376 ILE377 ARG378 THR379 ASN380 GLU381 GLU382 GLU383 MET384 ILE385 ASP386 ILE387 ALA388 ASN389 SER390 THR391 GLU392 TYR393 GLY394 LEU395 HIS396 SER397 ALA398 ILE399 PHE400 THR401 ASN402 ASP403 ILE404 ASN405 LYS406 SER407 LEU408 LYS409 PHE410 ALA411 GLU412 ASN413 LEU414 GLU415 PHE416 GLY417 GLY418 VAL419 VAL420 ILE421 ASN422 ASP423 SER424 SER425 LEU426 PHE427 ARG428 GLN429 ASP430 ASN431 MET432 PRO433 PHE434 GLY435 GLY436 VAL437 LYS438 LYS439 SER440 GLY441 LEU442 GLY443 ARG444 GLU445 GLY446 VAL447 LYS448 TYR449 ALA450 MET451 GLU452 GLU453 MET454 SER455 ASN456 ILE457 LYS458 THR459 ILE460 ILE461 ILE462 SER463 LYS464 ALA465
Unit 4 ASN10 ARG11 GLU12 ASP13 MET14 ASP15 VAL16 ILE17 ASN18 PRO19 TYR20 SER21 LEU22 GLU23 VAL24 ILE25 LYS26 LYS27 ILE28 PRO29 ALA30 LEU31 SER32 ARG33 GLU34 GLU35 ALA36 LYS37 GLU38 ALA39 ILE40 ASP41 THR42 ALA43 GLU44 LYS45 TYR46 LYS47 GLU48 VAL49 MET50 LYS51 ASN52 LEU53 PRO54 ILE55 THR56 LYS57 ARG58 TYR59 ASN60 ILE61 LEU62 MET63 ASN64 ILE65 ALA66 LYS67 GLN68 ILE69 LYS70 GLU71 LYS72 LYS73 GLU74 GLU75 LEU76 ALA77 LYS78 ILE79 LEU80 ALA81 ILE82 ASP83 ALA84 GLY85 LYS86 PRO87 ILE88 LYS89 GLN90 ALA91 ARG92 VAL93 GLU94 VAL95 GLU96 ARG97 SER98 ILE99 GLY100 THR101 PHE102 LYS103 LEU104 ALA105 ALA106 PHE107 TYR108 VAL109 LYS110 GLU111 HIS112 ARG113 ASP114 GLU115 VAL116 ILE117 PRO118 SER119 ASP120 ASP121 ARG122 LEU123 ILE124 PHE125 THR126 ARG127 ARG128 GLU129 PRO130 VAL131 GLY132 ILE133 VAL134 GLY135 ALA136 ILE137 THR138 PRO139 PHE140 ASN141 PHE142 PRO143 LEU144 ASN145 LEU146 SER147 ALA148 HIS149 LYS150 ILE151 ALA152 PRO153 ALA154 ILE155 ALA156 THR157 GLY158 ASN159 VAL160 ILE161 VAL162 HIS163 HIS164 PRO165 SER166 SER167 LYS168 ALA169 PRO170 LEU171 VAL172 CYS173 ILE174 GLU175 LEU176 ALA177 LYS178 ILE179 ILE180 GLU181 ASN182 ALA183 LEU184 LYS185 LYS186 TYR187 ASN188 VAL189 PRO190 LEU191 GLY192 VAL193 TYR194 ASN195 LEU196 LEU197 THR198 GLY199 ALA200 GLY201 GLU202 VAL203 VAL204 GLY205 ASP206 GLU207 ILE208 VAL209 VAL210 ASN211 GLU212 LYS213 VAL214 ASN215 MET216 ILE217 SER218 PHE219 THR220 GLY221 SER222 SER223 LYS224 VAL225 GLY226 GLU227 LEU228 ILE229 THR230 LYS231 LYS232 ALA233 GLY234 PHE235 LYS236 LYS237 ILE238 ALA239 LEU240 GLU241 LEU242 GLY243 GLY244 VAL245 ASN246 PRO247 ASN248 ILE249 VAL250 LEU251 LYS252 ASP253 ALA254 ASP255 LEU256 ASN257 LYS258 ALA259 VAL260 ASN261 ALA262 LEU263 ILE264 LYS265 GLY266 SER267 PHE268 ILE269 TYR270 ALA271 GLY272 GLN273 VAL274 CYS275 ILE276 SER277 VAL278 GLY279 MET280 ILE281 LEU282 VAL283 ASP284 GLU285 SER286 ILE287 ALA288 ASP289 LYS290 PHE291 ILE292 GLU293 MET294 PHE295 VAL296 ASN297 LYS298 ALA299 LYS300 VAL301 LEU302 ASN303 VAL304 GLY305 ASN306 PRO307 LEU308 ASP309 GLU310 LYS311 THR312 ASP313 VAL314 GLY315 PRO316 LEU317 ILE318 SER319 VAL320 GLU321 HIS322 ALA323 GLU324 TRP325 VAL326 GLU327 LYS328 VAL329 VAL330 GLU331 LYS332 ALA333 ILE334 ASP335 GLU336 GLY337 GLY338 LYS339 LEU340 LEU341 LEU342 GLY343 GLY344 LYS345 ARG346 ASP347 LYS348 ALA349 LEU350 PHE351 TYR352 PRO353 THR354 ILE355 LEU356 GLU357 VAL358 ASP359 ARG360 ASP361 ASN362 ILE363 LEU364 CYS365 LYS366 THR367 GLU368 THR369 PHE370 ALA371 PRO372 VAL373 ILE374 PRO375 ILE376 ILE377 ARG378 THR379 ASN380 GLU381 GLU382 GLU383 MET384 ILE385 ASP386 ILE387 ALA388 ASN389 SER390 THR391 GLU392 TYR393 GLY394 LEU395 HIS396 SER397 ALA398 ILE399 PHE400 THR401 ASN402 ASP403 ILE404 ASN405 LYS406 SER407 LEU408 LYS409 PHE410 ALA411 GLU412 ASN413 LEU414 GLU415 PHE416 GLY417 GLY418 VAL419 VAL420 ILE421 ASN422 ASP423 SER424 SER425 LEU426 PHE427 ARG428 GLN429 ASP430 ASN431 MET432 PRO433 PHE434 GLY435 GLY436 VAL437 LYS438 LYS439 SER440 GLY441 LEU442 GLY443 ARG444 GLU445 GLY446 VAL447 LYS448 TYR449 ALA450 MET451 GLU452 GLU453 MET454 SER455 ASN456 ILE457 LYS458 THR459 ILE460 ILE461 ILE462 SER463 LYS464 ALA465
Ligands
Unit 5 SO4487 SO4488
Unit 6 SO4487
Unit 7 SO4487 SO4488
Unit 8 SO4487 SO4488
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany