3PNQ - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF E.COLI DHA KINASE DHAK (H56N) COMPLEX W
• Keywords: STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL STRUCTURAL INITIATIVE, BSGI, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3PNQ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PTS-DEPENDENT DIHYDROXYACETONE KINASE, DIHYDROXYA BINDING SUBUNIT DHAK	A	334	2521	0
2	Protein	PTS-DEPENDENT DIHYDROXYACETONE KINASE, DIHYDROXYA BINDING SUBUNIT DHAK	B	336	2532	0
3	Protein	PTS-DEPENDENT DIHYDROXYACETONE KINASE, DIHYDROXYA BINDING SUBUNIT DHAK	C	335	2526	0
4	Protein	PTS-DEPENDENT DIHYDROXYACETONE KINASE, DIHYDROXYA BINDING SUBUNIT DHAK	D	334	2521	0
5	Ligand	PTS-DEPENDENT DIHYDROXYACETONE KINASE, DIHYDROXYA BINDING SUBUNIT DHAK	D	1	0	6
6	Water			481	0	481
total				1821	10100	487

Proteins

Unit 1	ASP 10 VAL 11 LEU 12 ASP 13 GLU 14 GLN 15 LEU 16 ALA 17 GLY 18 LEU 19 ALA 20 LYS 21 ALA 22 HIS 23 PRO 24 SER 25 LEU 26 THR 27 LEU 28 HIS 29 GLN 30 ASP 31 PRO 32 VAL 33 TYR 34 VAL 35 THR 36 ARG 37 ALA 38 ASP 39 ALA 40 PRO 41 VAL 42 ALA 43 GLY 44 LYS 45 VAL 46 ALA 47 LEU 48 LEU 49 SER 50 GLY 51 GLY 52 GLY 53 SER 54 GLY 55 ASN 56 GLU 57 PRO 58 MET 59 HIS 60 CYS 61 GLY 62 TYR 63 ILE 64 GLY 65 GLN 66 GLY 67 MET 68 LEU 69 SER 70 GLY 71 ALA 72 CYS 73 PRO 74 GLY 75 GLU 76 ILE 77 PHE 78 THR 79 SER 80 PRO 81 THR 82 PRO 83 ASP 84 LYS 85 ILE 86 PHE 87 GLU 88 CYS 89 ALA 90 MET 91 GLN 92 VAL 93 ASP 94 GLY 95 GLY 96 GLU 97 GLY 98 VAL 99 LEU 100 LEU 101 ILE 102 ILE 103 LYS 104 ASN 105 TYR 106 THR 107 GLY 108 ASP 109 ILE 110 LEU 111 ASN 112 PHE 113 GLU 114 THR 115 ALA 116 THR 117 GLU 118 LEU 119 LEU 120 HIS 121 ASP 122 SER 123 GLY 124 VAL 125 LYS 126 VAL 127 THR 128 THR 129 VAL 130 VAL 131 ILE 132 ASP 133 ASP 134 ASP 135 VAL 136 ALA 137 VAL 138 LYS 139 ASP 140 SER 141 LEU 142 TYR 143 THR 144 ALA 145 GLY 146 ARG 147 ARG 148 GLY 149 VAL 150 ALA 151 ASN 152 THR 153 VAL 154 LEU 155 ILE 156 GLU 157 LYS 158 LEU 159 VAL 160 GLY 161 ALA 162 ALA 163 ALA 164 GLU 165 ARG 166 GLY 167 ASP 168 SER 169 LEU 170 ASP 171 ALA 172 CYS 173 ALA 174 GLU 175 LEU 176 GLY 177 ARG 178 LYS 179 LEU 180 ASN 181 ASN 182 GLN 183 GLY 184 HIS 185 SER 186 ILE 187 GLY 188 ILE 189 ALA 190 LEU 191 GLY 192 LEU 206 ALA 207 ASP 208 ASN 209 GLU 210 MET 211 GLU 212 PHE 213 GLY 214 VAL 215 GLY 216 ILE 217 HIS 218 GLY 219 GLU 220 PRO 221 GLY 222 ILE 223 ASP 224 ARG 225 ARG 226 PRO 227 PHE 228 SER 229 SER 230 LEU 231 ASP 232 GLN 233 THR 234 VAL 235 ASP 236 GLU 237 MET 238 PHE 239 ASP 240 THR 241 LEU 242 LEU 243 VAL 244 ASN 245 GLY 246 SER 247 TYR 248 HIS 249 ARG 250 THR 251 LEU 252 ARG 253 PHE 254 TRP 255 ASP 256 TYR 257 GLN 258 GLN 259 GLY 260 SER 261 TRP 262 GLN 263 GLU 264 GLU 265 GLN 266 GLN 267 THR 268 LYS 269 GLN 270 PRO 271 LEU 272 GLN 273 SER 274 GLY 275 ASP 276 ARG 277 VAL 278 ILE 279 ALA 280 LEU 281 VAL 282 ASN 283 ASN 284 LEU 285 GLY 286 ALA 287 THR 288 PRO 289 LEU 290 SER 291 GLU 292 LEU 293 TYR 294 GLY 295 VAL 296 TYR 297 ASN 298 ARG 299 LEU 300 THR 301 THR 302 ARG 303 CYS 304 GLN 305 GLN 306 ALA 307 GLY 308 LEU 309 THR 310 ILE 311 GLU 312 ARG 313 ASN 314 LEU 315 ILE 316 GLY 317 ALA 318 TYR 319 CYS 320 THR 321 SER 322 LEU 323 ASP 324 MET 325 THR 326 GLY 327 PHE 328 SER 329 ILE 330 THR 331 LEU 332 LEU 333 LYS 334 VAL 335 ASP 336 ASP 337 GLU 338 THR 339 LEU 340 ALA 341 LEU 342 TRP 343 ASP 344 ALA 345 PRO 346 VAL 347 HIS 348 THR 349 PRO 350 ALA 351 LEU 352 ASN 353 TRP 354 GLY 355 LYS 356
Unit 2	ASP 10 VAL 11 LEU 12 ASP 13 GLU 14 GLN 15 LEU 16 ALA 17 GLY 18 LEU 19 ALA 20 LYS 21 ALA 22 HIS 23 PRO 24 SER 25 LEU 26 THR 27 LEU 28 HIS 29 GLN 30 ASP 31 PRO 32 VAL 33 TYR 34 VAL 35 THR 36 ARG 37 ALA 38 ASP 39 ALA 40 PRO 41 VAL 42 ALA 43 GLY 44 LYS 45 VAL 46 ALA 47 LEU 48 LEU 49 SER 50 GLY 51 GLY 52 GLY 53 SER 54 GLY 55 ASN 56 GLU 57 PRO 58 MET 59 HIS 60 CYS 61 GLY 62 TYR 63 ILE 64 GLY 65 GLN 66 GLY 67 MET 68 LEU 69 SER 70 GLY 71 ALA 72 CYS 73 PRO 74 GLY 75 GLU 76 ILE 77 PHE 78 THR 79 SER 80 PRO 81 THR 82 PRO 83 ASP 84 LYS 85 ILE 86 PHE 87 GLU 88 CYS 89 ALA 90 MET 91 GLN 92 VAL 93 ASP 94 GLY 95 GLY 96 GLU 97 GLY 98 VAL 99 LEU 100 LEU 101 ILE 102 ILE 103 LYS 104 ASN 105 TYR 106 THR 107 GLY 108 ASP 109 ILE 110 LEU 111 ASN 112 PHE 113 GLU 114 THR 115 ALA 116 THR 117 GLU 118 LEU 119 LEU 120 HIS 121 ASP 122 SER 123 GLY 124 VAL 125 LYS 126 VAL 127 THR 128 THR 129 VAL 130 VAL 131 ILE 132 ASP 133 ASP 134 ASP 135 VAL 136 ALA 137 VAL 138 LYS 139 ASP 140 SER 141 LEU 142 TYR 143 THR 144 ALA 145 GLY 146 ARG 147 ARG 148 GLY 149 VAL 150 ALA 151 ASN 152 THR 153 VAL 154 LEU 155 ILE 156 GLU 157 LYS 158 LEU 159 VAL 160 GLY 161 ALA 162 ALA 163 ALA 164 GLU 165 ARG 166 GLY 167 ASP 168 SER 169 LEU 170 ASP 171 ALA 172 CYS 173 ALA 174 GLU 175 LEU 176 GLY 177 ARG 178 LYS 179 LEU 180 ASN 181 ASN 182 GLN 183 GLY 184 HIS 185 SER 186 ILE 187 GLY 188 ILE 189 ALA 190 LEU 191 GLY 192 ALA 193 CYS 194 LEU 206 ALA 207 ASP 208 ASN 209 GLU 210 MET 211 GLU 212 PHE 213 GLY 214 VAL 215 GLY 216 ILE 217 HIS 218 GLY 219 GLU 220 PRO 221 GLY 222 ILE 223 ASP 224 ARG 225 ARG 226 PRO 227 PHE 228 SER 229 SER 230 LEU 231 ASP 232 GLN 233 THR 234 VAL 235 ASP 236 GLU 237 MET 238 PHE 239 ASP 240 THR 241 LEU 242 LEU 243 VAL 244 ASN 245 GLY 246 SER 247 TYR 248 HIS 249 ARG 250 THR 251 LEU 252 ARG 253 PHE 254 TRP 255 ASP 256 TYR 257 GLN 258 GLN 259 GLY 260 SER 261 TRP 262 GLN 263 GLU 264 GLU 265 GLN 266 GLN 267 THR 268 LYS 269 GLN 270 PRO 271 LEU 272 GLN 273 SER 274 GLY 275 ASP 276 ARG 277 VAL 278 ILE 279 ALA 280 LEU 281 VAL 282 ASN 283 ASN 284 LEU 285 GLY 286 ALA 287 THR 288 PRO 289 LEU 290 SER 291 GLU 292 LEU 293 TYR 294 GLY 295 VAL 296 TYR 297 ASN 298 ARG 299 LEU 300 THR 301 THR 302 ARG 303 CYS 304 GLN 305 GLN 306 ALA 307 GLY 308 LEU 309 THR 310 ILE 311 GLU 312 ARG 313 ASN 314 LEU 315 ILE 316 GLY 317 ALA 318 TYR 319 CYS 320 THR 321 SER 322 LEU 323 ASP 324 MET 325 THR 326 GLY 327 PHE 328 SER 329 ILE 330 THR 331 LEU 332 LEU 333 LYS 334 VAL 335 ASP 336 ASP 337 GLU 338 THR 339 LEU 340 ALA 341 LEU 342 TRP 343 ASP 344 ALA 345 PRO 346 VAL 347 HIS 348 THR 349 PRO 350 ALA 351 LEU 352 ASN 353 TRP 354 GLY 355 LYS 356
Unit 3	ASP 10 VAL 11 LEU 12 ASP 13 GLU 14 GLN 15 LEU 16 ALA 17 GLY 18 LEU 19 ALA 20 LYS 21 ALA 22 HIS 23 PRO 24 SER 25 LEU 26 THR 27 LEU 28 HIS 29 GLN 30 ASP 31 PRO 32 VAL 33 TYR 34 VAL 35 THR 36 ARG 37 ALA 38 ASP 39 ALA 40 PRO 41 VAL 42 ALA 43 GLY 44 LYS 45 VAL 46 ALA 47 LEU 48 LEU 49 SER 50 GLY 51 GLY 52 GLY 53 SER 54 GLY 55 ASN 56 GLU 57 PRO 58 MET 59 HIS 60 CYS 61 GLY 62 TYR 63 ILE 64 GLY 65 GLN 66 GLY 67 MET 68 LEU 69 SER 70 GLY 71 ALA 72 CYS 73 PRO 74 GLY 75 GLU 76 ILE 77 PHE 78 THR 79 SER 80 PRO 81 THR 82 PRO 83 ASP 84 LYS 85 ILE 86 PHE 87 GLU 88 CYS 89 ALA 90 MET 91 GLN 92 VAL 93 ASP 94 GLY 95 GLY 96 GLU 97 GLY 98 VAL 99 LEU 100 LEU 101 ILE 102 ILE 103 LYS 104 ASN 105 TYR 106 THR 107 GLY 108 ASP 109 ILE 110 LEU 111 ASN 112 PHE 113 GLU 114 THR 115 ALA 116 THR 117 GLU 118 LEU 119 LEU 120 HIS 121 ASP 122 SER 123 GLY 124 VAL 125 LYS 126 VAL 127 THR 128 THR 129 VAL 130 VAL 131 ILE 132 ASP 133 ASP 134 ASP 135 VAL 136 ALA 137 VAL 138 LYS 139 ASP 140 SER 141 LEU 142 TYR 143 THR 144 ALA 145 GLY 146 ARG 147 ARG 148 GLY 149 VAL 150 ALA 151 ASN 152 THR 153 VAL 154 LEU 155 ILE 156 GLU 157 LYS 158 LEU 159 VAL 160 GLY 161 ALA 162 ALA 163 ALA 164 GLU 165 ARG 166 GLY 167 ASP 168 SER 169 LEU 170 ASP 171 ALA 172 CYS 173 ALA 174 GLU 175 LEU 176 GLY 177 ARG 178 LYS 179 LEU 180 ASN 181 ASN 182 GLN 183 GLY 184 HIS 185 SER 186 ILE 187 GLY 188 ILE 189 ALA 190 LEU 191 GLY 192 ALA 193 LEU 206 ALA 207 ASP 208 ASN 209 GLU 210 MET 211 GLU 212 PHE 213 GLY 214 VAL 215 GLY 216 ILE 217 HIS 218 GLY 219 GLU 220 PRO 221 GLY 222 ILE 223 ASP 224 ARG 225 ARG 226 PRO 227 PHE 228 SER 229 SER 230 LEU 231 ASP 232 GLN 233 THR 234 VAL 235 ASP 236 GLU 237 MET 238 PHE 239 ASP 240 THR 241 LEU 242 LEU 243 VAL 244 ASN 245 GLY 246 SER 247 TYR 248 HIS 249 ARG 250 THR 251 LEU 252 ARG 253 PHE 254 TRP 255 ASP 256 TYR 257 GLN 258 GLN 259 GLY 260 SER 261 TRP 262 GLN 263 GLU 264 GLU 265 GLN 266 GLN 267 THR 268 LYS 269 GLN 270 PRO 271 LEU 272 GLN 273 SER 274 GLY 275 ASP 276 ARG 277 VAL 278 ILE 279 ALA 280 LEU 281 VAL 282 ASN 283 ASN 284 LEU 285 GLY 286 ALA 287 THR 288 PRO 289 LEU 290 SER 291 GLU 292 LEU 293 TYR 294 GLY 295 VAL 296 TYR 297 ASN 298 ARG 299 LEU 300 THR 301 THR 302 ARG 303 CYS 304 GLN 305 GLN 306 ALA 307 GLY 308 LEU 309 THR 310 ILE 311 GLU 312 ARG 313 ASN 314 LEU 315 ILE 316 GLY 317 ALA 318 TYR 319 CYS 320 THR 321 SER 322 LEU 323 ASP 324 MET 325 THR 326 GLY 327 PHE 328 SER 329 ILE 330 THR 331 LEU 332 LEU 333 LYS 334 VAL 335 ASP 336 ASP 337 GLU 338 THR 339 LEU 340 ALA 341 LEU 342 TRP 343 ASP 344 ALA 345 PRO 346 VAL 347 HIS 348 THR 349 PRO 350 ALA 351 LEU 352 ASN 353 TRP 354 GLY 355 LYS 356
Unit 4	ASP 10 VAL 11 LEU 12 ASP 13 GLU 14 GLN 15 LEU 16 ALA 17 GLY 18 LEU 19 ALA 20 LYS 21 ALA 22 HIS 23 PRO 24 SER 25 LEU 26 THR 27 LEU 28 HIS 29 GLN 30 ASP 31 PRO 32 VAL 33 TYR 34 VAL 35 THR 36 ARG 37 ALA 38 ASP 39 ALA 40 PRO 41 VAL 42 ALA 43 GLY 44 LYS 45 VAL 46 ALA 47 LEU 48 LEU 49 SER 50 GLY 51 GLY 52 GLY 53 SER 54 GLY 55 ASN 56 GLU 57 PRO 58 MET 59 HIS 60 CYS 61 GLY 62 TYR 63 ILE 64 GLY 65 GLN 66 GLY 67 MET 68 LEU 69 SER 70 GLY 71 ALA 72 CYS 73 PRO 74 GLY 75 GLU 76 ILE 77 PHE 78 THR 79 SER 80 PRO 81 THR 82 PRO 83 ASP 84 LYS 85 ILE 86 PHE 87 GLU 88 CYS 89 ALA 90 MET 91 GLN 92 VAL 93 ASP 94 GLY 95 GLY 96 GLU 97 GLY 98 VAL 99 LEU 100 LEU 101 ILE 102 ILE 103 LYS 104 ASN 105 TYR 106 THR 107 GLY 108 ASP 109 ILE 110 LEU 111 ASN 112 PHE 113 GLU 114 THR 115 ALA 116 THR 117 GLU 118 LEU 119 LEU 120 HIS 121 ASP 122 SER 123 GLY 124 VAL 125 LYS 126 VAL 127 THR 128 THR 129 VAL 130 VAL 131 ILE 132 ASP 133 ASP 134 ASP 135 VAL 136 ALA 137 VAL 138 LYS 139 ASP 140 SER 141 LEU 142 TYR 143 THR 144 ALA 145 GLY 146 ARG 147 ARG 148 GLY 149 VAL 150 ALA 151 ASN 152 THR 153 VAL 154 LEU 155 ILE 156 GLU 157 LYS 158 LEU 159 VAL 160 GLY 161 ALA 162 ALA 163 ALA 164 GLU 165 ARG 166 GLY 167 ASP 168 SER 169 LEU 170 ASP 171 ALA 172 CYS 173 ALA 174 GLU 175 LEU 176 GLY 177 ARG 178 LYS 179 LEU 180 ASN 181 ASN 182 GLN 183 GLY 184 HIS 185 SER 186 ILE 187 GLY 188 ILE 189 ALA 190 LEU 191 GLY 192 LEU 206 ALA 207 ASP 208 ASN 209 GLU 210 MET 211 GLU 212 PHE 213 GLY 214 VAL 215 GLY 216 ILE 217 HIS 218 GLY 219 GLU 220 PRO 221 GLY 222 ILE 223 ASP 224 ARG 225 ARG 226 PRO 227 PHE 228 SER 229 SER 230 LEU 231 ASP 232 GLN 233 THR 234 VAL 235 ASP 236 GLU 237 MET 238 PHE 239 ASP 240 THR 241 LEU 242 LEU 243 VAL 244 ASN 245 GLY 246 SER 247 TYR 248 HIS 249 ARG 250 THR 251 LEU 252 ARG 253 PHE 254 TRP 255 ASP 256 TYR 257 GLN 258 GLN 259 GLY 260 SER 261 TRP 262 GLN 263 GLU 264 GLU 265 GLN 266 GLN 267 THR 268 LYS 269 GLN 270 PRO 271 LEU 272 GLN 273 SER 274 GLY 275 ASP 276 ARG 277 VAL 278 ILE 279 ALA 280 LEU 281 VAL 282 ASN 283 ASN 284 LEU 285 GLY 286 ALA 287 THR 288 PRO 289 LEU 290 SER 291 GLU 292 LEU 293 TYR 294 GLY 295 VAL 296 TYR 297 ASN 298 ARG 299 LEU 300 THR 301 THR 302 ARG 303 CYS 304 GLN 305 GLN 306 ALA 307 GLY 308 LEU 309 THR 310 ILE 311 GLU 312 ARG 313 ASN 314 LEU 315 ILE 316 GLY 317 ALA 318 TYR 319 CYS 320 THR 321 SER 322 LEU 323 ASP 324 MET 325 THR 326 GLY 327 PHE 328 SER 329 ILE 330 THR 331 LEU 332 LEU 333 LYS 334 VAL 335 ASP 336 ASP 337 GLU 338 THR 339 LEU 340 ALA 341 LEU 342 TRP 343 ASP 344 ALA 345 PRO 346 VAL 347 HIS 348 THR 349 PRO 350 ALA 351 LEU 352 ASN 353 TRP 354 GLY 355 LYS 356

Ligands

Unit 5

2HA 511