3PHD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN HDAC6 IN COMPLEX WITH UBIQUITIN
• Keywords: HDAC6, UBIQUITIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PROTEIN BINDING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3PHD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HISTONE DEACETYLASE 6	A	102	761	0
2	Protein	HISTONE DEACETYLASE 6	B	100	758	0
3	Protein	HISTONE DEACETYLASE 6	C	85	629	0
4	Protein	HISTONE DEACETYLASE 6	D	84	623	0
5	Protein	POLYUBIQUITIN	E	14	74	0
6	Protein	POLYUBIQUITIN	F	5	30	0
7	Protein	POLYUBIQUITIN	G	40	223	0
8	Protein	POLYUBIQUITIN	H	39	209	0
9	Ligand	HISTONE DEACETYLASE 6	A	3	0	3
10	Ligand	HISTONE DEACETYLASE 6	B	3	0	3
11	Ligand	HISTONE DEACETYLASE 6	C	3	0	3
12	Ligand	HISTONE DEACETYLASE 6	D	3	0	3
13	Water			2	0	2
total				483	3307	14

Proteins

Unit 1	PRO 1 LEU 2 PRO 3 TRP 4 CYS 5 PRO 6 HIS 7 LEU 8 VAL 9 ALA 10 VAL 11 CYS 12 PRO 13 ILE 14 PRO 15 ALA 16 ALA 17 GLY 18 LEU 19 ASP 20 VAL 21 THR 22 GLN 23 PRO 24 CYS 25 GLY 26 ASP 27 CYS 28 GLY 29 THR 30 ILE 31 GLN 32 GLU 33 ASN 34 TRP 35 VAL 36 CYS 37 LEU 38 SER 39 CYS 40 TYR 41 GLN 42 VAL 43 TYR 44 CYS 45 GLY 46 ARG 47 TYR 48 ILE 49 ASN 50 GLY 51 HIS 52 MET 53 LEU 54 GLN 55 HIS 56 HIS 57 GLY 58 ASN 59 SER 60 GLY 61 HIS 62 PRO 63 LEU 64 VAL 65 LEU 66 SER 67 TYR 68 ILE 69 ASP 70 LEU 71 SER 72 ALA 73 TRP 74 CYS 75 TYR 76 TYR 77 CYS 78 GLN 79 ALA 80 TYR 81 VAL 82 HIS 83 HIS 84 GLN 85 ALA 86 LEU 87 LEU 88 ASP 89 VAL 90 LYS 91 ASN 92 ILE 93 ALA 94 HIS 95 GLN 96 ASN 97 LYS 98 PHE 99 GLY 100 GLU 101 ASP 102
Unit 2	PRO 1 LEU 2 PRO 3 TRP 4 CYS 5 PRO 6 HIS 7 LEU 8 VAL 9 ALA 10 VAL 11 CYS 12 PRO 13 ILE 14 PRO 15 ALA 16 ALA 17 GLY 18 LEU 19 ASP 20 VAL 21 THR 22 GLN 23 PRO 24 CYS 25 GLY 26 ASP 27 CYS 28 GLY 29 THR 30 ILE 31 GLN 32 GLU 33 ASN 34 TRP 35 VAL 36 CYS 37 LEU 38 SER 39 CYS 40 TYR 41 GLN 42 VAL 43 TYR 44 CYS 45 GLY 46 ARG 47 TYR 48 ILE 49 ASN 50 GLY 51 HIS 52 MET 53 LEU 54 GLN 55 HIS 56 HIS 57 GLY 58 ASN 59 SER 60 GLY 61 HIS 62 PRO 63 LEU 64 VAL 65 LEU 66 SER 67 TYR 68 ILE 69 ASP 70 LEU 71 SER 72 ALA 73 TRP 74 CYS 75 TYR 76 TYR 77 CYS 78 GLN 79 ALA 80 TYR 81 VAL 82 HIS 83 HIS 84 GLN 85 ALA 86 LEU 87 LEU 88 ASP 89 VAL 90 LYS 91 ASN 92 ILE 93 ALA 94 HIS 95 GLN 96 ASN 97 LYS 98 PHE 99 GLY 100
Unit 3	PRO 3 TRP 4 CYS 5 PRO 6 HIS 7 LEU 8 VAL 9 ALA 10 VAL 11 CYS 12 PRO 13 ILE 14 PRO 15 ALA 16 ALA 17 GLY 18 LEU 19 ASP 20 VAL 21 THR 22 GLN 23 PRO 24 CYS 25 GLY 26 ASP 27 CYS 28 GLY 29 THR 30 ILE 31 GLN 32 GLU 33 ASN 34 TRP 35 VAL 36 CYS 37 LEU 38 SER 39 CYS 40 TYR 41 GLN 42 VAL 43 TYR 44 CYS 45 GLY 46 ARG 47 TYR 48 ILE 49 ASN 50 GLY 51 HIS 52 MET 53 LEU 54 GLN 55 HIS 56 HIS 57 GLY 58 ASN 59 SER 60 GLY 61 HIS 62 PRO 63 LEU 64 VAL 65 LEU 66 SER 67 TYR 68 ILE 69 ASP 70 LEU 71 SER 72 ALA 73 TRP 74 CYS 75 TYR 76 TYR 77 CYS 78 GLN 79 ALA 80 TYR 81 VAL 82 HIS 83 HIS 84 GLN 85 ALA 86 LEU 87
Unit 4	TRP 4 CYS 5 PRO 6 HIS 7 LEU 8 VAL 9 ALA 10 VAL 11 CYS 12 PRO 13 ILE 14 PRO 15 ALA 16 ALA 17 GLY 18 LEU 19 ASP 20 VAL 21 THR 22 GLN 23 PRO 24 CYS 25 GLY 26 ASP 27 CYS 28 GLY 29 THR 30 ILE 31 GLN 32 GLU 33 ASN 34 TRP 35 VAL 36 CYS 37 LEU 38 SER 39 CYS 40 TYR 41 GLN 42 VAL 43 TYR 44 CYS 45 GLY 46 ARG 47 TYR 48 ILE 49 ASN 50 GLY 51 HIS 52 MET 53 LEU 54 GLN 55 HIS 56 HIS 57 GLY 58 ASN 59 SER 60 GLY 61 HIS 62 PRO 63 LEU 64 VAL 65 LEU 66 SER 67 TYR 68 ILE 69 ASP 70 LEU 71 SER 72 ALA 73 TRP 74 CYS 75 TYR 76 TYR 77 CYS 78 GLN 79 ALA 80 TYR 81 VAL 82 HIS 83 HIS 84 GLN 85 ALA 86 LEU 87
Unit 5	ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 LEU 67 HIS 68 LEU 69 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 GLY 76
Unit 6	ARG 72 LEU 73 ARG 74 GLY 75 GLY 76
Unit 7	VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 VAL 17 GLU 18 PRO 19 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 40 GLN 41 LEU 43 ILE 44 PHE 45 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 GLY 76
Unit 8	VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 PRO 19 SER 20 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 ILE 61 GLN 62 LYS 63 GLU 64 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 GLY 76

Ligands

Unit 9	ZN 1000 ZN 1001 ZN 1002
Unit 10	ZN 2000 ZN 2001 ZN 2002
Unit 11	ZN 2000 ZN 2001 ZN 2002
Unit 12	ZN 2000 ZN 2001 ZN 2002