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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AN ACYL-COA DEHYDROGENASE FROM MYCOBACT THERMORESISTIBILE BOUND TO REDUCED FLAVIN ADENINE DINUCLEOT BY COMBINED IODIDE ION SAD MR
Keywords STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, DEHYDROGENASE, DE NOVO PHASE DETERMINATION, IODIDE ION SAD, ACYL COA DEHYDROGENASE, REDU FLAVIN ADENINE DINUCLEOTIDE, FAD, FATTY ACID METABOLISM, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3PFD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ACYL-COA DEHYDROGENASE  A 368 2719 0
2  Protein   ACYL-COA DEHYDROGENASE  B 368 2717 0
3  Protein   ACYL-COA DEHYDROGENASE  C 369 2709 0
4  Protein   ACYL-COA DEHYDROGENASE  D 369 2725 0
5  Ligand   ACYL-COA DEHYDROGENASE  A 32 0 84
6  Ligand   ACYL-COA DEHYDROGENASE  B 29 0 81
7  Ligand   ACYL-COA DEHYDROGENASE  C 23 0 75
8  Ligand   ACYL-COA DEHYDROGENASE  D 29 0 81
9 Water     623 0 623
total       2210 10870 944
Proteins
Unit 1 GLU18 HIS19 ILE20 ALA21 LEU22 ARG23 GLU24 ALA25 ILE26 ARG27 ALA28 LEU29 ALA30 GLU31 LYS32 GLU33 ILE34 ALA35 PRO36 TYR37 ALA38 ALA39 GLU40 VAL41 ASP42 GLU43 LYS44 ALA45 ARG46 PHE47 PRO48 GLU49 GLU50 ALA51 LEU52 ALA53 ALA54 LEU55 ASN56 SER57 SER58 GLY59 PHE60 SER61 ALA62 ILE63 HIS64 VAL65 PRO66 GLU67 GLU68 TYR69 GLY70 GLY71 GLN72 GLY73 ALA74 ASP75 SER76 VAL77 ALA78 THR79 CYS80 ILE81 VAL82 ILE83 GLU84 GLU85 VAL86 ALA87 ARG88 VAL89 ASP90 CYS91 SER92 ALA93 SER94 LEU95 ILE96 PRO97 ALA98 VAL99 ASN100 LYS101 LEU102 GLY103 THR104 MET105 GLY106 LEU107 ILE108 LEU109 ARG110 GLY111 SER112 GLU113 GLU114 LEU115 LYS116 LYS117 GLN118 VAL119 LEU120 PRO121 ALA122 VAL123 ALA124 SER125 GLY126 GLU127 ALA128 MET129 ALA130 SER131 TYR132 ALA133 LEU134 SER135 GLU136 ARG137 GLU138 ALA139 GLY140 SER141 ASP142 ALA143 ALA144 SER145 MET146 ARG147 THR148 ARG149 ALA150 VAL151 ALA152 ASP153 GLY154 ASP155 ASP156 TRP157 ILE158 LEU159 ASN160 GLY161 SER162 LYS163 CYS164 TRP165 ILE166 THR167 ASN168 GLY169 GLY170 LYS171 SER172 THR173 TRP174 TYR175 THR176 VAL177 MET178 ALA179 VAL180 THR181 ASP182 PRO183 ASP184 LYS185 GLY186 ALA187 ASN188 GLY189 ILE190 SER191 ALA192 PHE193 MET194 VAL195 HIS196 LYS197 ASP198 ASP199 GLU200 GLY201 PHE202 THR203 VAL204 GLY205 PRO206 LYS207 GLU208 ARG209 LYS210 LEU211 GLY212 ILE213 LYS214 GLY215 SER216 PRO217 THR218 THR219 GLU220 LEU221 TYR222 PHE223 GLU224 ASN225 CYS226 ARG227 ILE228 PRO229 GLY230 ASP231 ARG232 ILE233 ILE234 GLY235 GLU236 PRO237 GLY238 THR239 GLY240 PHE241 LYS242 THR243 ALA244 LEU245 ALA246 THR247 LEU248 ASP249 HIS250 THR251 ARG252 PRO253 THR254 ILE255 GLY256 ALA257 GLN258 ALA259 VAL260 GLY261 ILE262 ALA263 GLN264 GLY265 ALA266 LEU267 ASP268 ALA269 ALA270 ILE271 ALA272 TYR273 THR274 LYS275 GLU276 ARG277 LYS278 GLN279 PHE280 GLY281 ARG282 PRO283 VAL284 SER285 ASP286 ASN287 GLN288 GLY289 VAL290 GLN291 PHE292 MET293 LEU294 ALA295 ASP296 MET297 ALA298 MET299 LYS300 ILE301 GLU302 ALA303 ALA304 ARG305 LEU306 MET307 VAL308 TYR309 SER310 ALA311 ALA312 ALA313 ARG314 ALA315 GLU316 ARG317 GLY318 GLY323 PHE324 ILE325 SER326 ALA327 ALA328 SER329 LYS330 CYS331 PHE332 ALA333 SER334 ASP335 VAL336 ALA337 MET338 GLU339 VAL340 THR341 THR342 ASP343 ALA344 VAL345 GLN346 LEU347 PHE348 GLY349 GLY350 TYR351 GLY352 TYR353 THR354 GLN355 ASP356 PHE357 PRO358 VAL359 GLU360 ARG361 MET362 MET363 ARG364 ASP365 ALA366 LYS367 ILE368 THR369 GLN370 ILE371 TYR372 GLU373 GLY374 THR375 ASN376 GLN377 ILE378 GLN379 ARG380 VAL381 VAL382 MET383 SER384 ARG385 ALA386 LEU387 LEU388 ARG389
Unit 2 GLU18 HIS19 ILE20 ALA21 LEU22 ARG23 GLU24 ALA25 ILE26 ARG27 ALA28 LEU29 ALA30 GLU31 LYS32 GLU33 ILE34 ALA35 PRO36 TYR37 ALA38 ALA39 GLU40 VAL41 ASP42 GLU43 LYS44 ALA45 ARG46 PHE47 PRO48 GLU49 GLU50 ALA51 LEU52 ALA53 ALA54 LEU55 ASN56 SER57 SER58 GLY59 PHE60 SER61 ALA62 ILE63 HIS64 VAL65 PRO66 GLU67 GLU68 TYR69 GLY70 GLY71 GLN72 GLY73 ALA74 ASP75 SER76 VAL77 ALA78 THR79 CYS80 ILE81 VAL82 ILE83 GLU84 GLU85 VAL86 ALA87 ARG88 VAL89 ASP90 CYS91 SER92 ALA93 SER94 LEU95 ILE96 PRO97 ALA98 VAL99 ASN100 LYS101 LEU102 GLY103 THR104 MET105 GLY106 LEU107 ILE108 LEU109 ARG110 GLY111 SER112 GLU113 GLU114 LEU115 LYS116 LYS117 GLN118 VAL119 LEU120 PRO121 ALA122 VAL123 ALA124 SER125 GLY126 GLU127 ALA128 MET129 ALA130 SER131 TYR132 ALA133 LEU134 SER135 GLU136 ARG137 GLU138 ALA139 GLY140 SER141 ASP142 ALA143 ALA144 SER145 MET146 ARG147 THR148 ARG149 ALA150 VAL151 ALA152 ASP153 GLY154 ASP155 ASP156 TRP157 ILE158 LEU159 ASN160 GLY161 SER162 LYS163 CYS164 TRP165 ILE166 THR167 ASN168 GLY169 GLY170 LYS171 SER172 THR173 TRP174 TYR175 THR176 VAL177 MET178 ALA179 VAL180 THR181 ASP182 PRO183 ASP184 LYS185 GLY186 ALA187 ASN188 GLY189 ILE190 SER191 ALA192 PHE193 MET194 VAL195 HIS196 LYS197 ASP198 ASP199 GLU200 GLY201 PHE202 THR203 VAL204 GLY205 PRO206 LYS207 GLU208 ARG209 LYS210 LEU211 GLY212 ILE213 LYS214 GLY215 SER216 PRO217 THR218 THR219 GLU220 LEU221 TYR222 PHE223 GLU224 ASN225 CYS226 ARG227 ILE228 PRO229 GLY230 ASP231 ARG232 ILE233 ILE234 GLY235 GLU236 PRO237 GLY238 THR239 GLY240 PHE241 LYS242 THR243 ALA244 LEU245 ALA246 THR247 LEU248 ASP249 HIS250 THR251 ARG252 PRO253 THR254 ILE255 GLY256 ALA257 GLN258 ALA259 VAL260 GLY261 ILE262 ALA263 GLN264 GLY265 ALA266 LEU267 ASP268 ALA269 ALA270 ILE271 ALA272 TYR273 THR274 LYS275 GLU276 ARG277 LYS278 GLN279 PHE280 GLY281 ARG282 PRO283 VAL284 SER285 ASP286 ASN287 GLN288 GLY289 VAL290 GLN291 PHE292 MET293 LEU294 ALA295 ASP296 MET297 ALA298 MET299 LYS300 ILE301 GLU302 ALA303 ALA304 ARG305 LEU306 MET307 VAL308 TYR309 SER310 ALA311 ALA312 ALA313 ARG314 ALA315 GLU316 ARG317 GLY318 GLY323 PHE324 ILE325 SER326 ALA327 ALA328 SER329 LYS330 CYS331 PHE332 ALA333 SER334 ASP335 VAL336 ALA337 MET338 GLU339 VAL340 THR341 THR342 ASP343 ALA344 VAL345 GLN346 LEU347 PHE348 GLY349 GLY350 TYR351 GLY352 TYR353 THR354 GLN355 ASP356 PHE357 PRO358 VAL359 GLU360 ARG361 MET362 MET363 ARG364 ASP365 ALA366 LYS367 ILE368 THR369 GLN370 ILE371 TYR372 GLU373 GLY374 THR375 ASN376 GLN377 ILE378 GLN379 ARG380 VAL381 VAL382 MET383 SER384 ARG385 ALA386 LEU387 LEU388 ARG389
Unit 3 HIS19 ILE20 ALA21 LEU22 ARG23 GLU24 ALA25 ILE26 ARG27 ALA28 LEU29 ALA30 GLU31 LYS32 GLU33 ILE34 ALA35 PRO36 TYR37 ALA38 ALA39 GLU40 VAL41 ASP42 GLU43 LYS44 ALA45 ARG46 PHE47 PRO48 GLU49 GLU50 ALA51 LEU52 ALA53 ALA54 LEU55 ASN56 SER57 SER58 GLY59 PHE60 SER61 ALA62 ILE63 HIS64 VAL65 PRO66 GLU67 GLU68 TYR69 GLY70 GLY71 GLN72 GLY73 ALA74 ASP75 SER76 VAL77 ALA78 THR79 CYS80 ILE81 VAL82 ILE83 GLU84 GLU85 VAL86 ALA87 ARG88 VAL89 ASP90 CYS91 SER92 ALA93 SER94 LEU95 ILE96 PRO97 ALA98 VAL99 ASN100 LYS101 LEU102 GLY103 THR104 MET105 GLY106 LEU107 ILE108 LEU109 ARG110 GLY111 SER112 GLU113 GLU114 LEU115 LYS116 LYS117 GLN118 VAL119 LEU120 PRO121 ALA122 VAL123 ALA124 SER125 GLY126 GLU127 ALA128 MET129 ALA130 SER131 TYR132 ALA133 LEU134 SER135 GLU136 ARG137 GLU138 ALA139 GLY140 SER141 ASP142 ALA143 ALA144 SER145 MET146 ARG147 THR148 ARG149 ALA150 VAL151 ALA152 ASP153 GLY154 ASP155 ASP156 TRP157 ILE158 LEU159 ASN160 GLY161 SER162 LYS163 CYS164 TRP165 ILE166 THR167 ASN168 GLY169 GLY170 LYS171 SER172 THR173 TRP174 TYR175 THR176 VAL177 MET178 ALA179 VAL180 THR181 ASP182 PRO183 ASP184 LYS185 GLY186 ALA187 ASN188 GLY189 ILE190 SER191 ALA192 PHE193 MET194 VAL195 HIS196 LYS197 ASP198 ASP199 GLU200 GLY201 PHE202 THR203 VAL204 GLY205 PRO206 LYS207 GLU208 ARG209 LYS210 LEU211 GLY212 ILE213 LYS214 GLY215 SER216 PRO217 THR218 THR219 GLU220 LEU221 TYR222 PHE223 GLU224 ASN225 CYS226 ARG227 ILE228 PRO229 GLY230 ASP231 ARG232 ILE233 ILE234 GLY235 GLU236 PRO237 GLY238 THR239 GLY240 PHE241 LYS242 THR243 ALA244 LEU245 ALA246 THR247 LEU248 ASP249 HIS250 THR251 ARG252 PRO253 THR254 ILE255 GLY256 ALA257 GLN258 ALA259 VAL260 GLY261 ILE262 ALA263 GLN264 GLY265 ALA266 LEU267 ASP268 ALA269 ALA270 ILE271 ALA272 TYR273 THR274 LYS275 GLU276 ARG277 LYS278 GLN279 PHE280 GLY281 ARG282 PRO283 VAL284 SER285 ASP286 ASN287 GLN288 GLY289 VAL290 GLN291 PHE292 MET293 LEU294 ALA295 ASP296 MET297 ALA298 MET299 LYS300 ILE301 GLU302 ALA303 ALA304 ARG305 LEU306 MET307 VAL308 TYR309 SER310 ALA311 ALA312 ALA313 ARG314 ALA315 GLU316 ARG317 GLY318 ASP321 LEU322 GLY323 PHE324 ILE325 SER326 ALA327 ALA328 SER329 LYS330 CYS331 PHE332 ALA333 SER334 ASP335 VAL336 ALA337 MET338 GLU339 VAL340 THR341 THR342 ASP343 ALA344 VAL345 GLN346 LEU347 PHE348 GLY349 GLY350 TYR351 GLY352 TYR353 THR354 GLN355 ASP356 PHE357 PRO358 VAL359 GLU360 ARG361 MET362 MET363 ARG364 ASP365 ALA366 LYS367 ILE368 THR369 GLN370 ILE371 TYR372 GLU373 GLY374 THR375 ASN376 GLN377 ILE378 GLN379 ARG380 VAL381 VAL382 MET383 SER384 ARG385 ALA386 LEU387 LEU388 ARG389
Unit 4 GLU18 HIS19 ILE20 ALA21 LEU22 ARG23 GLU24 ALA25 ILE26 ARG27 ALA28 LEU29 ALA30 GLU31 LYS32 GLU33 ILE34 ALA35 PRO36 TYR37 ALA38 ALA39 GLU40 VAL41 ASP42 GLU43 LYS44 ALA45 ARG46 PHE47 PRO48 GLU49 GLU50 ALA51 LEU52 ALA53 ALA54 LEU55 ASN56 SER57 SER58 GLY59 PHE60 SER61 ALA62 ILE63 HIS64 VAL65 PRO66 GLU67 GLU68 TYR69 GLY70 GLY71 GLN72 GLY73 ALA74 ASP75 SER76 VAL77 ALA78 THR79 CYS80 ILE81 VAL82 ILE83 GLU84 GLU85 VAL86 ALA87 ARG88 VAL89 ASP90 CYS91 SER92 ALA93 SER94 LEU95 ILE96 PRO97 ALA98 VAL99 ASN100 LYS101 LEU102 GLY103 THR104 MET105 GLY106 LEU107 ILE108 LEU109 ARG110 GLY111 SER112 GLU113 GLU114 LEU115 LYS116 LYS117 GLN118 VAL119 LEU120 PRO121 ALA122 VAL123 ALA124 SER125 GLY126 GLU127 ALA128 MET129 ALA130 SER131 TYR132 ALA133 LEU134 SER135 GLU136 ARG137 GLU138 ALA139 GLY140 SER141 ASP142 ALA143 ALA144 SER145 MET146 ARG147 THR148 ARG149 ALA150 VAL151 ALA152 ASP153 GLY154 ASP155 ASP156 TRP157 ILE158 LEU159 ASN160 GLY161 SER162 LYS163 CYS164 TRP165 ILE166 THR167 ASN168 GLY169 GLY170 LYS171 SER172 THR173 TRP174 TYR175 THR176 VAL177 MET178 ALA179 VAL180 THR181 ASP182 PRO183 ASP184 LYS185 GLY186 ALA187 ASN188 GLY189 ILE190 SER191 ALA192 PHE193 MET194 VAL195 HIS196 LYS197 ASP198 ASP199 GLU200 GLY201 PHE202 THR203 VAL204 GLY205 PRO206 LYS207 GLU208 ARG209 LYS210 LEU211 GLY212 ILE213 LYS214 GLY215 SER216 PRO217 THR218 THR219 GLU220 LEU221 TYR222 PHE223 GLU224 ASN225 CYS226 ARG227 ILE228 PRO229 GLY230 ASP231 ARG232 ILE233 ILE234 GLY235 GLU236 PRO237 GLY238 THR239 GLY240 PHE241 LYS242 THR243 ALA244 LEU245 ALA246 THR247 LEU248 ASP249 HIS250 THR251 ARG252 PRO253 THR254 ILE255 GLY256 ALA257 GLN258 ALA259 VAL260 GLY261 ILE262 ALA263 GLN264 GLY265 ALA266 LEU267 ASP268 ALA269 ALA270 ILE271 ALA272 TYR273 THR274 LYS275 GLU276 ARG277 LYS278 GLN279 PHE280 GLY281 ARG282 PRO283 VAL284 SER285 ASP286 ASN287 GLN288 GLY289 VAL290 GLN291 PHE292 MET293 LEU294 ALA295 ASP296 MET297 ALA298 MET299 LYS300 ILE301 GLU302 ALA303 ALA304 ARG305 LEU306 MET307 VAL308 TYR309 SER310 ALA311 ALA312 ALA313 ARG314 ALA315 GLU316 ARG317 GLY318 LEU322 GLY323 PHE324 ILE325 SER326 ALA327 ALA328 SER329 LYS330 CYS331 PHE332 ALA333 SER334 ASP335 VAL336 ALA337 MET338 GLU339 VAL340 THR341 THR342 ASP343 ALA344 VAL345 GLN346 LEU347 PHE348 GLY349 GLY350 TYR351 GLY352 TYR353 THR354 GLN355 ASP356 PHE357 PRO358 VAL359 GLU360 ARG361 MET362 MET363 ARG364 ASP365 ALA366 LYS367 ILE368 THR369 GLN370 ILE371 TYR372 GLU373 GLY374 THR375 ASN376 GLN377 ILE378 GLN379 ARG380 VAL381 VAL382 MET383 SER384 ARG385 ALA386 LEU387 LEU388 ARG389
Ligands
Unit 5 FDA390 IOD391 IOD392 IOD393 IOD394 IOD395 IOD396 IOD397 IOD398 IOD399 IOD400 IOD401 IOD402 IOD403 IOD404 IOD405 IOD406 IOD407 IOD408 IOD409 IOD410 IOD411 IOD412 IOD413 IOD414 IOD415 IOD416 IOD417 IOD418 IOD419 IOD420 IOD421
Unit 6 FDA390 IOD391 IOD392 IOD393 IOD394 IOD395 IOD396 IOD397 IOD398 IOD399 IOD400 IOD401 IOD402 IOD403 IOD404 IOD405 IOD406 IOD407 IOD408 IOD409 IOD410 IOD411 IOD412 IOD413 IOD414 IOD415 IOD416 IOD417 IOD418
Unit 7 FDA390 IOD391 IOD392 IOD393 IOD394 IOD395 IOD396 IOD397 IOD398 IOD399 IOD400 IOD401 IOD402 IOD403 IOD404 IOD405 IOD406 IOD407 IOD408 IOD409 IOD410 IOD411 IOD412
Unit 8 FDA390 IOD391 IOD392 IOD393 IOD394 IOD395 IOD396 IOD397 IOD398 IOD399 IOD400 IOD401 IOD402 IOD403 IOD404 IOD405 IOD406 IOD407 IOD408 IOD409 IOD410 IOD411 IOD412 IOD413 IOD414 IOD415 IOD416 IOD417 IOD418
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany