3PD5 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE EDITING DOMAIN OF THREONYL-TRNA SYN FROM PYROCOCCUS ABYSSI IN COMPLEX WITH AN ANALOG OF THREONY ADENYLATE
• Keywords: ALPHA/BETA FOLD, DEACYLASE, EDITING, AMINOACYL-TRNA SYNTHETA TRANSLATION, LIGASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3PD5	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THREONYL-TRNA SYNTHETASE	A	142	1130	0
2	Protein	THREONYL-TRNA SYNTHETASE	B	147	1168	0
3	Ligand	THREONYL-TRNA SYNTHETASE	A	2	0	36
4	Ligand	THREONYL-TRNA SYNTHETASE	B	1	0	30
5	Water			148	0	148
total				440	2298	214

Proteins

Unit 1

MET 1 ARG 2 VAL 3 LEU 4 LEU 5 ILE 6 HIS 7 SER 8 ASP 9 TYR 10 ILE 11 GLU 12 TYR 13 GLU 14 VAL 15 LYS 16 ASP 17 LYS 18 ALA 19 LEU 20 LYS 21 ASN 22 PRO 23 GLU 24 PRO 25 ILE 26 SER 27 GLU 28 ASP 29 MET 30 LYS 31 ARG 32 GLY 33 ARG 34 MET 35 GLU 36 GLU 37 VAL 38 LEU 39 VAL 40 ALA 41 PHE 42 ILE 43 SER 44 VAL 45 GLU 46 LYS 47 VAL 48 ASP 49 GLU 50 LYS 51 ASN 52 PRO 53 GLU 54 GLU 55 VAL 56 SER 57 LEU 58 LYS 59 ALA 60 ILE 61 GLU 62 GLU 63 ILE 64 SER 65 LYS 66 VAL 67 ALA 68 GLU 69 GLN 70 VAL 71 LYS 72 ALA 73 GLU 74 ASN 75 VAL 76 PHE 77 VAL 78 TYR 79 PRO 80 PHE 81 ALA 82 HIS 83 LEU 84 SER 85 SER 86 GLU 87 LEU 88 ALA 89 LYS 90 PRO 91 SER 92 VAL 93 ALA 94 MET 95 ASP 96 ILE 97 LEU 98 ASN 99 ARG 100 VAL 101 TYR 102 GLN 103 GLY 104 LEU 105 LYS 106 GLU 107 ARG 108 GLY 109 PHE 110 ASN 111 VAL 112 GLY 113 LYS 114 ALA 115 PRO 116 PHE 117 GLY 118 TYR 119 TYR 120 LYS 121 ALA 122 PHE 123 LYS 124 ILE 125 SER 126 CYS 127 LYS 128 GLY 129 HIS 130 PRO 131 LEU 132 ALA 133 GLU 134 LEU 135 SER 136 ARG 137 THR 138 ILE 139 VAL 140 PRO 141 GLU 142

Unit 2

MET 1 ARG 2 VAL 3 LEU 4 LEU 5 ILE 6 HIS 7 SER 8 ASP 9 TYR 10 ILE 11 GLU 12 TYR 13 GLU 14 VAL 15 LYS 16 ASP 17 LYS 18 ALA 19 LEU 20 LYS 21 ASN 22 PRO 23 GLU 24 PRO 25 ILE 26 SER 27 GLU 28 ASP 29 MET 30 LYS 31 ARG 32 GLY 33 ARG 34 MET 35 GLU 36 GLU 37 VAL 38 LEU 39 VAL 40 ALA 41 PHE 42 ILE 43 SER 44 VAL 45 GLU 46 LYS 47 VAL 48 ASP 49 GLU 50 LYS 51 ASN 52 PRO 53 GLU 54 GLU 55 VAL 56 SER 57 LEU 58 LYS 59 ALA 60 ILE 61 GLU 62 GLU 63 ILE 64 SER 65 LYS 66 VAL 67 ALA 68 GLU 69 GLN 70 VAL 71 LYS 72 ALA 73 GLU 74 ASN 75 VAL 76 PHE 77 VAL 78 TYR 79 PRO 80 PHE 81 ALA 82 HIS 83 LEU 84 SER 85 SER 86 GLU 87 LEU 88 ALA 89 LYS 90 PRO 91 SER 92 VAL 93 ALA 94 MET 95 ASP 96 ILE 97 LEU 98 ASN 99 ARG 100 VAL 101 TYR 102 GLN 103 GLY 104 LEU 105 LYS 106 GLU 107 ARG 108 GLY 109 PHE 110 ASN 111 VAL 112 GLY 113 LYS 114 ALA 115 PRO 116 PHE 117 GLY 118 TYR 119 TYR 120 LYS 121 ALA 122 PHE 123 LYS 124 ILE 125 SER 126 CYS 127 LYS 128 GLY 129 HIS 130 PRO 131 LEU 132 ALA 133 GLU 134 LEU 135 SER 136 ARG 137 THR 138 ILE 139 VAL 140 PRO 141 GLU 142 GLU 143 ALA 144 ARG 145 VAL 146 GLU 147

Ligands

Unit 3	GOL 500 TSB 501
Unit 4	TSB 502