3P9W - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF AN ENGINEERED HUMAN AUTONOMOUS VH DOMAI COMPLEX WITH VEGF
• Keywords: VH, CYSTINE KNOT CYTOKINE, VEGF-R, SIGNALING PROTEIN, SIGNAL PROTEIN-IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3P9W	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	VASCULAR ENDOTHELIAL GROWTH FACTOR A	A	96	780	0
2	Protein	HUMAN VEGF	B	123	949	0
3	Protein	VASCULAR ENDOTHELIAL GROWTH FACTOR A	C	97	789	0
4	Protein	HUMAN VEGF	D	121	934	0
5	Protein	VASCULAR ENDOTHELIAL GROWTH FACTOR A	E	97	789	0
6	Protein	HUMAN VEGF	F	122	940	0
7	Protein	VASCULAR ENDOTHELIAL GROWTH FACTOR A	G	97	790	0
8	Protein	HUMAN VEGF	H	122	940	0
9	Water			439	0	439
total				1314	6911	439

Proteins

Unit 1	HIS 12 GLU 13 VAL 14 VAL 15 LYS 16 PHE 17 MET 18 ASP 19 VAL 20 TYR 21 GLN 22 ARG 23 SER 24 TYR 25 CYS 26 HIS 27 PRO 28 ILE 29 GLU 30 THR 31 LEU 32 VAL 33 ASP 34 ILE 35 PHE 36 GLN 37 GLU 38 TYR 39 PRO 40 ASP 41 GLU 42 ILE 43 GLU 44 TYR 45 ILE 46 PHE 47 LYS 48 PRO 49 SER 50 CYS 51 VAL 52 PRO 53 LEU 54 MET 55 ARG 56 CYS 57 GLY 58 GLY 59 CYS 60 CYS 61 ASN 62 ASP 63 GLU 64 GLY 65 LEU 66 GLU 67 CYS 68 VAL 69 PRO 70 THR 71 GLU 72 GLU 73 SER 74 ASN 75 ILE 76 THR 77 MET 78 GLN 79 ILE 80 MET 81 ARG 82 ILE 83 LYS 84 PRO 85 HIS 86 GLN 87 GLY 88 GLN 89 HIS 90 ILE 91 GLY 92 GLU 93 MET 94 SER 95 PHE 96 LEU 97 GLN 98 HIS 99 ASN 100 LYS 101 CYS 102 GLU 103 CYS 104 ARG 105 PRO 106 LYS 107
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ASN 28 ILE 29 LYS 30 ASP 31 THR 32 TYR 33 ILE 34 GLY 35 TRP 36 VAL 37 ARG 38 ARG 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 GLU 45 GLU 46 LEU 47 VAL 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 52A THR 53 ASN 54 GLY 55 TYR 56 THR 57 ARG 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 TYR 93 TYR 94 HIS 95 TYR 96 TYR 97 GLY 98 TRP 99 HIS 100 PRO 100A GLY 100B TYR 100C GLY 100D LEU 100E SER 100F TYR 101 SER 102 SER 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113
Unit 3	HIS 12 GLU 13 VAL 14 VAL 15 LYS 16 PHE 17 MET 18 ASP 19 VAL 20 TYR 21 GLN 22 ARG 23 SER 24 TYR 25 CYS 26 HIS 27 PRO 28 ILE 29 GLU 30 THR 31 LEU 32 VAL 33 ASP 34 ILE 35 PHE 36 GLN 37 GLU 38 TYR 39 PRO 40 ASP 41 GLU 42 ILE 43 GLU 44 TYR 45 ILE 46 PHE 47 LYS 48 PRO 49 SER 50 CYS 51 VAL 52 PRO 53 LEU 54 MET 55 ARG 56 CYS 57 GLY 58 GLY 59 CYS 60 CYS 61 ASN 62 ASP 63 GLU 64 GLY 65 LEU 66 GLU 67 CYS 68 VAL 69 PRO 70 THR 71 GLU 72 GLU 73 SER 74 ASN 75 ILE 76 THR 77 MET 78 GLN 79 ILE 80 MET 81 ARG 82 ILE 83 LYS 84 PRO 85 HIS 86 GLN 87 GLY 88 GLN 89 HIS 90 ILE 91 GLY 92 GLU 93 MET 94 SER 95 PHE 96 LEU 97 GLN 98 HIS 99 ASN 100 LYS 101 CYS 102 GLU 103 CYS 104 ARG 105 PRO 106 LYS 107 LYS 108
Unit 4	VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ASN 28 ILE 29 LYS 30 ASP 31 THR 32 TYR 33 ILE 34 GLY 35 TRP 36 VAL 37 ARG 38 ARG 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 GLU 45 GLU 46 LEU 47 VAL 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 52A THR 53 ASN 54 GLY 55 TYR 56 THR 57 ARG 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 TYR 93 TYR 94 HIS 95 TYR 96 TYR 97 GLY 98 TRP 99 HIS 100 PRO 100A GLY 100B TYR 100C GLY 100D LEU 100E SER 100F TYR 101 SER 102 SER 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112
Unit 5	HIS 12 GLU 13 VAL 14 VAL 15 LYS 16 PHE 17 MET 18 ASP 19 VAL 20 TYR 21 GLN 22 ARG 23 SER 24 TYR 25 CYS 26 HIS 27 PRO 28 ILE 29 GLU 30 THR 31 LEU 32 VAL 33 ASP 34 ILE 35 PHE 36 GLN 37 GLU 38 TYR 39 PRO 40 ASP 41 GLU 42 ILE 43 GLU 44 TYR 45 ILE 46 PHE 47 LYS 48 PRO 49 SER 50 CYS 51 VAL 52 PRO 53 LEU 54 MET 55 ARG 56 CYS 57 GLY 58 GLY 59 CYS 60 CYS 61 ASN 62 ASP 63 GLU 64 GLY 65 LEU 66 GLU 67 CYS 68 VAL 69 PRO 70 THR 71 GLU 72 GLU 73 SER 74 ASN 75 ILE 76 THR 77 MET 78 GLN 79 ILE 80 MET 81 ARG 82 ILE 83 LYS 84 PRO 85 HIS 86 GLN 87 GLY 88 GLN 89 HIS 90 ILE 91 GLY 92 GLU 93 MET 94 SER 95 PHE 96 LEU 97 GLN 98 HIS 99 ASN 100 LYS 101 CYS 102 GLU 103 CYS 104 ARG 105 PRO 106 LYS 107 LYS 108
Unit 6	VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ASN 28 ILE 29 LYS 30 ASP 31 THR 32 TYR 33 ILE 34 GLY 35 TRP 36 VAL 37 ARG 38 ARG 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 GLU 45 GLU 46 LEU 47 VAL 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 52A THR 53 ASN 54 GLY 55 TYR 56 THR 57 ARG 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 TYR 93 TYR 94 HIS 95 TYR 96 TYR 97 GLY 98 TRP 99 HIS 100 PRO 100A GLY 100B TYR 100C GLY 100D LEU 100E SER 100F TYR 101 SER 102 SER 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113
Unit 7	HIS 11 HIS 12 GLU 13 VAL 14 VAL 15 LYS 16 PHE 17 MET 18 ASP 19 VAL 20 TYR 21 GLN 22 ARG 23 SER 24 TYR 25 CYS 26 HIS 27 PRO 28 ILE 29 GLU 30 THR 31 LEU 32 VAL 33 ASP 34 ILE 35 PHE 36 GLN 37 GLU 38 TYR 39 PRO 40 ASP 41 GLU 42 ILE 43 GLU 44 TYR 45 ILE 46 PHE 47 LYS 48 PRO 49 SER 50 CYS 51 VAL 52 PRO 53 LEU 54 MET 55 ARG 56 CYS 57 GLY 58 GLY 59 CYS 60 CYS 61 ASN 62 ASP 63 GLU 64 GLY 65 LEU 66 GLU 67 CYS 68 VAL 69 PRO 70 THR 71 GLU 72 GLU 73 SER 74 ASN 75 ILE 76 THR 77 MET 78 GLN 79 ILE 80 MET 81 ARG 82 ILE 83 LYS 84 PRO 85 HIS 86 GLN 87 GLY 88 GLN 89 HIS 90 ILE 91 GLY 92 GLU 93 MET 94 SER 95 PHE 96 LEU 97 GLN 98 HIS 99 ASN 100 LYS 101 CYS 102 GLU 103 CYS 104 ARG 105 PRO 106 LYS 107
Unit 8	VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ASN 28 ILE 29 LYS 30 ASP 31 THR 32 TYR 33 ILE 34 GLY 35 TRP 36 VAL 37 ARG 38 ARG 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 GLU 45 GLU 46 LEU 47 VAL 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 52A THR 53 ASN 54 GLY 55 TYR 56 THR 57 ARG 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 TYR 93 TYR 94 HIS 95 TYR 96 TYR 97 GLY 98 TRP 99 HIS 100 PRO 100A GLY 100B TYR 100C GLY 100D LEU 100E SER 100F TYR 101 SER 102 SER 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113