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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE LDLR/PCSK9 COMPLEX REVEALS THE RECEPTOR EXTENDED CONFORMATION
Keywords B-PROPELLOR, RECEPTOR, CONVERTASE, HYDROLASE-LIPID BINDING P COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3P5B     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9  P 92 740 0
2  Protein   PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9  A 493 3637 0
3  Protein   LOW DENSITY LIPOPROTEIN RECEPTOR VARIANT  L 394 3084 0
4  Ligand   PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9  A 1 0 1
5  Ligand   LOW DENSITY LIPOPROTEIN RECEPTOR VARIANT  L 2 0 2
total       982 7461 3

Proteins
Unit 1 THR61 ALA62 THR63 PHE64 HIS65 ARG66 CYS67 ALA68 LYS69 ASP70 PRO71 TRP72 ARG73 LEU74 PRO75 GLY76 THR77 TYR78 VAL79 VAL80 VAL81 LEU82 LYS83 GLU84 GLU85 THR86 HIS87 LEU88 SER89 GLN90 SER91 GLU92 ARG93 THR94 ALA95 ARG96 ARG97 LEU98 GLN99 ALA100 GLN101 ALA102 ALA103 ARG104 ARG105 GLY106 TYR107 LEU108 THR109 LYS110 ILE111 LEU112 HIS113 VAL114 PHE115 HIS116 GLY117 LEU118 LEU119 PRO120 GLY121 PHE122 LEU123 VAL124 LYS125 MET126 SER127 GLY128 ASP129 LEU130 LEU131 GLU132 LEU133 ALA134 LEU135 LYS136 LEU137 PRO138 HIS139 VAL140 ASP141 TYR142 ILE143 GLU144 GLU145 ASP146 SER147 SER148 VAL149 PHE150 ALA151 GLN152
Unit 2 SER153 ILE154 PRO155 TRP156 ASN157 LEU158 GLU159 ARG160 ILE161 THR162 PRO163 PRO164 ARG165 TYR166 ARG167 ALA168 ASP169 GLU170 TYR171 GLN172 LEU179 VAL180 GLU181 VAL182 TYR183 LEU184 LEU185 ASP186 THR187 SER188 ILE189 GLN190 SER191 ASP192 HIS193 ARG194 GLU195 ILE196 GLU197 GLY198 ARG199 VAL200 MET201 VAL202 THR203 ASP204 PHE205 GLU206 ASN207 VAL208 PRO209 GLU210 GLU211 ASP212 CYS223 ASP224 SER225 HIS226 GLY227 THR228 HIS229 LEU230 ALA231 GLY232 VAL233 VAL234 SER235 GLY236 ARG237 ASP238 ALA239 GLY240 VAL241 ALA242 LYS243 GLY244 ALA245 SER246 MET247 ARG248 SER249 LEU250 ARG251 VAL252 LEU253 ASN254 CYS255 GLN256 GLY257 LYS258 GLY259 THR260 VAL261 SER262 GLY263 THR264 LEU265 ILE266 GLY267 LEU268 GLU269 PHE270 ILE271 ARG272 LYS273 SER274 GLN275 LEU276 VAL277 GLN278 PRO279 VAL280 GLY281 PRO282 LEU283 VAL284 VAL285 LEU286 LEU287 PRO288 LEU289 ALA290 GLY291 GLY292 TYR293 SER294 ARG295 VAL296 LEU297 ASN298 ALA299 ALA300 CYS301 GLN302 ARG303 LEU304 ALA305 ARG306 ALA307 GLY308 VAL309 VAL310 LEU311 VAL312 THR313 ALA314 ALA315 GLY316 ASN317 PHE318 ARG319 ASP320 ASP321 ALA322 CYS323 LEU324 TYR325 SER326 PRO327 ALA328 SER329 ALA330 PRO331 GLU332 VAL333 ILE334 THR335 VAL336 GLY337 ALA338 THR339 ASN340 ALA341 GLN342 ASP343 GLN344 PRO345 VAL346 THR347 LEU348 GLY349 THR350 LEU351 GLY352 THR353 ASN354 PHE355 GLY356 ARG357 CYS358 VAL359 ASP360 LEU361 PHE362 ALA363 PRO364 GLY365 GLU366 ASP367 ILE368 ILE369 GLY370 ALA371 SER372 SER373 ASP374 CYS375 SER376 THR377 CYS378 PHE379 VAL380 SER381 GLN382 SER383 GLY384 THR385 SER386 GLN387 ALA388 ALA389 ALA390 HIS391 VAL392 ALA393 GLY394 ILE395 ALA396 ALA397 MET398 MET399 LEU400 SER401 ALA402 GLU403 PRO404 GLU405 LEU406 THR407 LEU408 ALA409 GLU410 LEU411 ARG412 GLN413 ARG414 LEU415 ILE416 HIS417 PHE418 SER419 ALA420 LYS421 ASP422 VAL423 ILE424 ASN425 GLU426 ALA427 TRP428 PHE429 PRO430 GLU431 ASP432 GLN433 ARG434 VAL435 LEU436 THR437 PRO438 ASN439 LEU440 VAL441 ALA442 ALA443 LEU444 PRO445 PRO446 SER447 THR448 HIS449 TRP453 GLN454 LEU455 PHE456 CYS457 ARG458 THR459 VAL460 TRP461 SER462 ALA463 HIS464 SER465 GLY466 PRO467 THR468 ARG469 MET470 ALA471 THR472 ALA473 ILE474 ALA475 ARG476 CYS477 ALA478 PRO479 ASP480 GLU481 GLU482 LEU483 LEU484 SER485 CYS486 SER487 SER488 PHE489 SER490 ARG491 SER492 GLY493 LYS494 ARG495 ARG496 GLY497 GLU498 ARG499 MET500 GLU501 ALA502 GLN503 GLY504 GLY505 LYS506 LEU507 VAL508 CYS509 ARG510 ALA511 HIS512 ASN513 ALA514 PHE515 GLY516 GLY517 GLU518 GLY519 VAL520 TYR521 ALA522 ILE523 ALA524 ARG525 CYS526 CYS527 LEU528 LEU529 PRO530 GLN531 ALA532 ASN533 CYS534 SER535 VAL536 HIS537 THR538 ALA539 PRO540 PRO541 ALA542 GLU543 ALA544 SER545 MET546 GLY547 THR548 ARG549 VAL550 HIS551 CYS552 HIS553 GLN554 GLN555 GLY556 HIS557 VAL558 LEU559 THR560 GLY561 CYS562 SER563 SER564 HIS565 TRP566 GLU567 VAL568 GLU569 ASP570 LEU571 PRO577 VAL578 LEU579 ARG580 PRO581 ARG582 GLY583 GLN584 PRO585 ASN586 GLN587 CYS588 VAL589 GLY590 HIS591 ARG592 GLU593 ALA594 SER595 ILE596 HIS597 ALA598 SER599 CYS600 CYS601 HIS602 ALA603 PRO604 GLY605 LEU606 GLU607 CYS608 LYS609 VAL610 LYS611 GLU612 HIS613 GLY614 ILE615 PRO616 ALA617 PRO618 GLN619 GLU620 GLN621 VAL622 THR623 VAL624 ALA625 CYS626 GLU627 GLU628 GLY629 TRP630 THR631 LEU632 THR633 GLY634 CYS635 SER636 ALA637 LEU638 PRO639 GLY640 HIS643 VAL644 LEU645 GLY646 ALA647 TYR648 ALA649 VAL650 ASP651 ASN652 THR653 CYS654 VAL655 VAL656 ARG657 SER658 ARG659 ALA671 VAL672 THR673 ALA674 VAL675 ALA676 ILE677 CYS678 CYS679 ARG680 SER681 ARG682
Unit 3 ASN295 GLU296 CYS297 LEU298 ASP299 ASN300 ASN301 GLY302 GLY303 CYS304 SER305 HIS306 VAL307 CYS308 ASN309 ASP310 LEU311 LYS312 ILE313 GLY314 TYR315 GLU316 CYS317 LEU318 CYS319 PRO320 ASP321 GLY322 PHE323 GLN324 LEU325 VAL326 ALA327 GLN328 ARG329 ARG330 CYS331 GLU332 ASP333 ILE334 ASP335 GLU336 CYS337 GLN338 ASP339 PRO340 ASP341 THR342 CYS343 SER344 GLN345 LEU346 CYS347 VAL348 ASN349 LEU350 GLU351 GLY352 GLY353 TYR354 LYS355 CYS356 GLN357 CYS358 GLU359 GLU360 GLY361 PHE362 GLN363 LEU364 ASP365 PRO366 HIS367 THR368 LYS369 ALA370 CYS371 LYS372 ALA373 VAL374 GLY375 SER376 ILE377 ALA378 TYR379 LEU380 PHE381 PHE382 THR383 ASN384 ARG385 HIS386 GLU387 VAL388 ARG389 LYS390 MET391 THR392 LEU393 ASP394 ARG395 SER396 GLU397 TYR398 THR399 SER400 LEU401 ILE402 PRO403 ASN404 LEU405 ARG406 ASN407 VAL408 VAL409 ALA410 LEU411 ASP412 THR413 GLU414 VAL415 ALA416 SER417 ASN418 ARG419 ILE420 TYR421 TRP422 SER423 ASP424 LEU425 SER426 GLN427 ARG428 MET429 ILE430 CYS431 SER432 THR433 GLN434 LEU435 SER442 SER443 TYR444 ASP445 THR446 VAL447 ILE448 SER449 ARG450 ASP451 ILE452 GLN453 ALA454 PRO455 ASP456 GLY457 LEU458 ALA459 VAL460 ASP461 TRP462 ILE463 HIS464 SER465 ASN466 ILE467 TYR468 TRP469 THR470 ASP471 SER472 VAL473 LEU474 GLY475 THR476 VAL477 SER478 VAL479 ALA480 ASP481 THR482 LYS483 GLY484 VAL485 LYS486 ARG487 LYS488 THR489 LEU490 PHE491 ARG492 GLU493 ASN494 GLY495 SER496 LYS497 PRO498 ARG499 ALA500 ILE501 VAL502 VAL503 ASP504 PRO505 VAL506 HIS507 GLY508 PHE509 MET510 TYR511 TRP512 THR513 ASP514 TRP515 GLY516 THR517 PRO518 ALA519 LYS520 ILE521 LYS522 LYS523 GLY524 GLY525 LEU526 ASN527 GLY528 VAL529 ASP530 ILE531 TYR532 SER533 LEU534 VAL535 THR536 GLU537 ASN538 ILE539 GLN540 TRP541 PRO542 ASN543 GLY544 ILE545 THR546 LEU547 ASP548 LEU549 LEU550 SER551 GLY552 ARG553 LEU554 TYR555 TRP556 VAL557 ASP558 SER559 LYS560 LEU561 HIS562 SER563 ILE564 SER565 SER566 ILE567 ASP568 VAL569 ASN570 GLY571 GLY572 ASN573 ARG574 LYS575 THR576 ILE577 LEU578 GLU579 ASP580 GLU581 LYS582 ARG583 LEU584 ALA585 HIS586 PRO587 PHE588 SER589 LEU590 ALA591 VAL592 PHE593 GLU594 ASP595 LYS596 VAL597 PHE598 TRP599 THR600 ASP601 ILE602 ILE603 ASN604 GLU605 ALA606 ILE607 PHE608 SER609 ALA610 ASN611 ARG612 LEU613 THR614 GLY615 SER616 ASP617 VAL618 ASN619 LEU620 LEU621 ALA622 GLU623 ASN624 LEU625 LEU626 SER627 PRO628 GLU629 ASP630 MET631 VAL632 LEU633 PHE634 HIS635 ASN636 LEU637 THR638 GLN639 PRO640 ARG641 GLY642 VAL643 ASN644 TRP645 CYS646 GLU647 ARG648 THR649 THR650 LEU651 SER652 ASN653 GLY654 GLY655 CYS656 GLN657 TYR658 LEU659 CYS660 LEU661 PRO662 ALA663 PRO664 GLN665 ILE666 ASN667 PRO668 HIS669 SER670 PRO671 LYS672 PHE673 THR674 CYS675 ALA676 CYS677 PRO678 ASP679 GLY680 MET681 LEU682 LEU683 ALA684 ARG685 ASP686 MET687 ARG688 SER689 CYS690 LEU691 THR692 GLU693 ALA694

Ligands
Unit 4 CA2
Unit 5 CA1 CA3

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany