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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A GLYCINE RIBOSWITCH FROM FUSOBACTERIUM
Keywords RIBOSWITCH, RNA, COOPERATIVE, GLYCINE, RNA BINDING PROTEIN-R COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3P49     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 169 3624 0
2  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  B 92 749 0
3  Protein   GLYCINE RIBOSWITCH  A 15 0 23
4 Water     20 0 20
total       296 4373 43

Proteins
Unit 2 THR6 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96 MET97
Unit 3 MG735 MG736 MG737 MG738 MG739 MG740 MG741 MG742 MG743 MG744 GLY745 GLY746 MG747 MG748 MG749

Nucleic acids
Unit 1 G0 G1 A2 U3 A4 U5 G6 A7 G8 G9 A10 G11 A12 G13 A14 U15 U16 U17 C18 A19 U20 A25 U26 G27 A28 A29 A30 C31 A32 C33 C34 G35 A36 A37 G38 A39 A40 G41 U42 A43 A44 A45 U46 C47 U48 U49 U50 C51 A52 G53 G54 U55 A56 A57 A58 A59 A60 G61 G62 A63 C64 U65 C66 A67 U68 A69 U70 U71 G72 G73 A74 C75 G76 A77 A78 C79 C80 U81 C82 U83 G84 G85 A86 G87 A88 G89 C90 U91 U92 A93 U94 C95 U96 A97 A98 G99 A100 G101 A102 U103 A104 A105 C106 A107 C108 C109 G110 A111 A112 G113 G114 A115 G116 C117 A118 A119 A120 G121 C122 U123 A124 A125 U126 U127 U128 U129 A130 G131 C132 C133 U134 A135 A136 A137 C138 U139 C140 U141 C142 A143 G144 G145 U146 A147 A148 A149 A150 G151 G152 A153 C154 G155 G156 A157 G158 C721 C722 A723 U724 U725 G726 C727 A728 C729 U730 C731 C732 G733 G734

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany