3OYH - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOM COMPLEX WITH MAGNESIUM AND THE INSTI MK0536
• Keywords: PROTEIN-DNA COMPLEX, TETRAMER, DNA INTEGRATION, ENDONUCLEASE BINDING, MULTIFUNCTIONAL ENZYME, NUCLEASE, NUCLEOTIDYLTRANS NUCLEUS, TRANSFERASE, VIRAL NUCLEOPROTEIN, VIRION, DNA-BIND BINDING, HHCC MOTIF, VIRAL PROTEIN, RECOMBINATION, INHIBITO BINDING PROTEIN-DNA COMPLEX, RECOMBINATION,VIRAL PROTEIN-DN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3OYH	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PFV INTEGRASE	A	368	2920	0
2	Protein	PFV INTEGRASE	B	184	1423	0
3	Other macromolecule		C	19	387	0
4	Other macromolecule	DNA (5'- D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')	D	17	345	0
5	Ligand	PFV INTEGRASE	A	10	0	63
6	Ligand	PFV INTEGRASE	B	2	0	6
7	Water			162	0	162
total				762	5075	231

Proteins

Unit 1

LEU 8 ASP 9 ALA 10 GLU 11 LEU 12 ASP 13 GLN 14 LEU 15 LEU 16 GLN 17 GLY 18 HIS 19 TYR 20 ILE 21 LYS 22 GLY 23 TYR 24 PRO 25 LYS 26 GLN 27 TYR 28 THR 29 TYR 30 PHE 31 LEU 32 GLU 33 ASP 34 GLY 35 LYS 36 VAL 37 LYS 38 VAL 39 SER 40 ARG 41 PRO 42 GLU 43 GLY 44 VAL 45 LYS 46 ILE 47 ILE 48 PRO 49 PRO 50 GLN 51 SER 52 ASP 53 ARG 54 GLN 55 LYS 56 ILE 57 VAL 58 LEU 59 GLN 60 ALA 61 HIS 62 ASN 63 LEU 64 ALA 65 HIS 66 THR 67 GLY 68 ARG 69 GLU 70 ALA 71 THR 72 LEU 73 LEU 74 LYS 75 ILE 76 ALA 77 ASN 78 LEU 79 TYR 80 TRP 81 TRP 82 PRO 83 ASN 84 MET 85 ARG 86 LYS 87 ASP 88 VAL 89 VAL 90 LYS 91 GLN 92 LEU 93 GLY 94 ARG 95 CYS 96 GLN 97 GLN 98 CYS 99 LEU 100 ILE 101 THR 102 ASN 103 ALA 104 SER 105 ASN 106 LYS 107 ALA 108 SER 109 GLY 110 PRO 111 ILE 112 LEU 113 ARG 114 PRO 115 ASP 116 ARG 117 PRO 118 GLN 119 LYS 120 PRO 121 PHE 122 ASP 123 LYS 124 PHE 125 PHE 126 ILE 127 ASP 128 TYR 129 ILE 130 GLY 131 PRO 132 LEU 133 PRO 134 PRO 135 SER 136 GLN 137 GLY 138 TYR 139 LEU 140 TYR 141 VAL 142 LEU 143 VAL 144 VAL 145 VAL 146 ASP 147 GLY 148 MET 149 THR 150 GLY 151 PHE 152 THR 153 TRP 154 LEU 155 TYR 156 PRO 157 THR 158 LYS 159 ALA 160 PRO 161 SER 162 THR 163 SER 164 ALA 165 THR 166 VAL 167 LYS 168 SER 169 LEU 170 ASN 171 VAL 172 LEU 173 THR 174 SER 175 ILE 176 ALA 177 ILE 178 PRO 179 LYS 180 VAL 181 ILE 182 HIS 183 SER 184 ASP 185 GLN 186 GLY 187 ALA 188 ALA 189 PHE 190 THR 191 SER 192 SER 193 THR 194 PHE 195 ALA 196 GLU 197 TRP 198 ALA 199 LYS 200 GLU 201 ARG 202 GLY 203 ILE 204 HIS 205 LEU 206 GLU 207 PHE 208 SER 209 THR 210 PRO 211 TYR 212 HIS 213 PRO 214 GLN 215 SER 216 SER 217 GLY 218 LYS 219 VAL 220 GLU 221 ARG 222 LYS 223 ASN 224 SER 225 ASP 226 ILE 227 LYS 228 ARG 229 LEU 230 LEU 231 THR 232 LYS 233 LEU 234 LEU 235 VAL 236 GLY 237 ARG 238 PRO 239 THR 240 LYS 241 TRP 242 TYR 243 ASP 244 LEU 245 LEU 246 PRO 247 VAL 248 VAL 249 GLN 250 LEU 251 ALA 252 LEU 253 ASN 254 ASN 255 THR 256 TYR 257 SER 258 PRO 259 VAL 260 LEU 261 LYS 262 TYR 263 THR 264 PRO 265 HIS 266 GLN 267 LEU 268 LEU 269 PHE 270 GLY 271 ILE 272 ASP 273 SER 274 ASN 275 THR 276 PRO 277 PHE 278 ALA 279 ASN 280 GLN 281 ASP 282 THR 283 LEU 284 ASP 285 LEU 286 THR 287 ARG 288 GLU 289 GLU 290 GLU 291 LEU 292 SER 293 LEU 294 LEU 295 GLN 296 GLU 297 ILE 298 ARG 299 THR 300 SER 301 LEU 302 TYR 303 HIS 304 PRO 305 SER 306 THR 307 PRO 308 PRO 309 ALA 310 SER 311 SER 312 ARG 313 SER 314 TRP 315 SER 316 PRO 317 VAL 318 VAL 319 GLY 320 GLN 321 LEU 322 VAL 323 GLN 324 GLU 325 ARG 326 VAL 327 ALA 328 ARG 329 PRO 330 ALA 331 SER 332 LEU 333 ARG 334 PRO 335 ARG 336 TRP 337 HIS 338 LYS 339 PRO 340 SER 341 THR 342 VAL 343 LEU 344 LYS 345 VAL 346 LEU 347 ASN 348 PRO 349 ARG 350 THR 351 VAL 352 VAL 353 ILE 354 LEU 355 ASP 356 HIS 357 LEU 358 GLY 359 ASN 360 ASN 361 ARG 362 THR 363 VAL 364 SER 365 ILE 366 ASP 367 ASN 368 LEU 369 LYS 370 PRO 371 THR 372 SER 373 HIS 374 GLN 375

Unit 2

ASP 116 ARG 117 PRO 118 GLN 119 LYS 120 PRO 121 PHE 122 ASP 123 LYS 124 PHE 125 PHE 126 ILE 127 ASP 128 TYR 129 ILE 130 GLY 131 PRO 132 LEU 133 PRO 134 PRO 135 SER 136 GLN 137 GLY 138 TYR 139 LEU 140 TYR 141 VAL 142 LEU 143 VAL 144 VAL 145 VAL 146 ASP 147 GLY 148 MET 149 THR 150 GLY 151 PHE 152 THR 153 TRP 154 LEU 155 TYR 156 PRO 157 THR 158 LYS 159 ALA 160 PRO 161 SER 162 THR 163 SER 164 ALA 165 THR 166 VAL 167 LYS 168 SER 169 LEU 170 ASN 171 VAL 172 LEU 173 THR 174 SER 175 ILE 176 ALA 177 ILE 178 PRO 179 LYS 180 VAL 181 ILE 182 HIS 183 SER 184 ASP 185 GLN 186 GLY 187 ALA 188 ALA 189 PHE 190 THR 191 SER 192 SER 193 THR 194 PHE 195 ALA 196 GLU 197 TRP 198 ALA 199 LYS 200 GLU 201 ARG 202 GLY 203 ILE 204 HIS 205 LEU 206 GLU 207 PHE 208 SER 209 THR 210 PRO 211 TYR 212 HIS 213 PRO 214 GLN 215 SER 216 SER 217 GLY 218 LYS 219 VAL 220 GLU 221 ARG 222 LYS 223 ASN 224 SER 225 ASP 226 ILE 227 LYS 228 ARG 229 LEU 230 LEU 231 THR 232 LYS 233 LEU 234 LEU 235 VAL 236 GLY 237 ARG 238 PRO 239 THR 240 LYS 241 TRP 242 TYR 243 ASP 244 LEU 245 LEU 246 PRO 247 VAL 248 VAL 249 GLN 250 LEU 251 ALA 252 LEU 253 ASN 254 ASN 255 THR 256 TYR 257 SER 258 PRO 259 VAL 260 LEU 261 LYS 262 TYR 263 THR 264 PRO 265 HIS 266 GLN 267 LEU 268 LEU 269 PHE 270 GLY 271 ILE 272 ASP 273 SER 274 ASN 275 THR 276 PRO 277 PHE 278 ALA 279 ASN 280 GLN 281 ASP 282 THR 283 LEU 284 ASP 285 LEU 286 THR 287 ARG 288 GLU 289 GLU 290 GLU 291 LEU 292 SER 293 LEU 294 LEU 295 GLN 296 GLU 297 ILE 298 ARG 299

Other macromolecules

Unit 3	DA 1 DT 2 DT 3 DG 4 DT 5 DC 6 DA 7 DT 8 DG 9 DG 10 DA 11 DA 12 DT 13 DT 14 DT 15 DC 16 DG 17 DC 18 DA 19
Unit 4	DT 1 DG 2 DC 3 DG 4 DA 5 DA 6 DA 7 DT 8 DT 9 DC 10 DC 11 DA 12 DT 13 DG 14 DA 15 DC 16 DA 17

Ligands

Unit 5	ZN 393 SO4 394 NH4 395 MG 396 MG 397 ZYN 398 GOL 801 GOL 802 GOL 803 GOL 805
Unit 6	SO4 393 MG 394