[Image Library Home] | [Image Library Entry] |
Title | CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, TL-ACETATE SOAKED | |
Keywords | GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3OXM | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 88 | 1855 | 51 | |
2 | RNA | B | 88 | 1878 | 23 | |
3 | Protein | DOMAIN II OF GLYCINE RIBOSWITCH | A | 1 | 0 | 5 |
4 | Protein | DOMAIN II OF GLYCINE RIBOSWITCH | B | 4 | 0 | 8 |
5 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | A | 4 | 0 | 4 |
6 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | B | 2 | 0 | 2 |
7 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | A | 7 | 0 | 7 |
8 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | B | 1 | 0 | 1 |
9 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | A | 1 | 0 | 1 |
10 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | B | 2 | 0 | 2 |
11 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | A | 3 | 0 | 3 |
12 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | B | 1 | 0 | 1 |
13 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | A | 3 | 0 | 3 |
14 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | B | 7 | 0 | 7 |
15 | Ligand | DOMAIN II OF GLYCINE RIBOSWITCH | A | 3 | 0 | 3 |
16 | Water | 36 | 0 | 36 | ||
total | 251 | 3733 | 157 |
Unit 3 | GLY89 |
Unit 4 | GLY89 TL201 TL202 TL203 |
Unit 1 | GDP1 G2 C3 U4 C5 U6 G7 G8 A9 G10 A11 G12 A13 A14 C15 C16 G17 U18 U19 U20 A21 A22 U23 C24 G25 G26 U27 C28 G29 C30 C31 G32 A33 A34 G35 G36 A37 G38 C39 A40 A41 G42 C43 U44 C45 U46 G47 C48 G49 G50 A51 A52 A53 C54 G55 C56 A57 G58 A59 G60 U61 G62 A63 A64 A65 C66 U67 C68 U69 C70 A71 G72 G73 C74 A75 A76 A77 A78 G79 G80 A81 C82 A83 G84 A85 G86 U87 CCC88 |
Unit 2 | G1 G2 C3 U4 C5 U6 G7 G8 A9 G10 A11 G12 A13 A14 C15 C16 G17 U18 U19 U20 A21 A22 U23 C24 G25 G26 U27 C28 G29 C30 C31 G32 A33 A34 G35 G36 A37 G38 C39 A40 A41 G42 C43 U44 C45 U46 G47 C48 G49 G50 A51 A52 A53 C54 G55 C56 A57 G58 A59 G60 U61 G62 A63 A64 A65 C66 U67 C68 U69 C70 A71 G72 G73 C74 A75 A76 A77 A78 G79 G80 A81 C82 A83 G84 A85 G86 U87 CCC88 |
Unit 5 | TL204 TL205 TL206 TL207 |
Unit 6 | TL208 TL209 |
Unit 7 | MG101 MG102 MG103 MG104 MG106 MG107 TL210 |
Unit 8 | MG108 |
Unit 9 | MG109 |
Unit 10 | MG110 MG111 |
Unit 11 | MG112 MG113 MG114 |
Unit 12 | MG115 |
Unit 13 | MG116 MG117 MG118 |
Unit 14 | MG119 MG120 MG121 MG122 MG123 MG124 MG125 |
Unit 15 | MG126 MG127 MG128 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |