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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF B. MEGATERIUM LEVANSUCRASE MUTANT K373A
Keywords FIVE FOLD BETA-PROPELLER, LEVANSUCRASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3OM4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LEVANSUCRASE  A 448 3538 0
2  Protein   LEVANSUCRASE  B 448 3538 0
3  Protein   LEVANSUCRASE  C 448 3538 0
4  Protein   LEVANSUCRASE  D 448 3538 0
5  Ligand   LEVANSUCRASE  A 4 0 23
6  Ligand   LEVANSUCRASE  B 4 0 26
7  Ligand   LEVANSUCRASE  C 5 0 34
8  Ligand   LEVANSUCRASE  D 4 0 21
9 Water     1457 0 1457
total       3266 14152 1561
Proteins
Unit 1 SER34 LYS35 ASP36 PHE37 ASN38 ASN39 SER40 TYR41 GLY42 ILE43 SER44 HIS45 ILE46 THR47 ARG48 ASP49 ASN50 MET51 VAL52 LYS53 ILE54 PRO55 GLN56 GLN57 GLN58 ASN59 SER60 ASP61 GLN62 PHE63 LYS64 VAL65 PRO66 ALA67 PHE68 ASP69 GLU70 SER71 THR72 ILE73 LYS74 ASN75 ILE76 ALA77 SER78 ALA79 LYS80 GLY81 LYS82 ASN83 ALA84 SER85 GLY86 ASN87 THR88 ILE89 ASP90 LEU91 ASP92 VAL93 TRP94 ASP95 SER96 TRP97 PRO98 LEU99 GLN100 ASN101 ALA102 ASP103 GLY104 THR105 VAL106 ALA107 THR108 TYR109 HIS110 GLY111 TYR112 GLN113 ILE114 VAL115 PHE116 ALA117 LEU118 ALA119 GLY120 ASP121 PRO122 LYS123 ASP124 SER125 ASN126 ASP127 THR128 SER129 VAL130 TYR131 LEU132 PHE133 TYR134 LYS135 LYS136 ALA137 GLY138 ASP139 LYS140 SER141 ILE142 ASP143 SER144 TRP145 LYS146 ASN147 ALA148 GLY149 ARG150 VAL151 PHE152 LYS153 ASP154 SER155 ASP156 LYS157 PHE158 VAL159 PRO160 ASN161 ASP162 PRO163 HIS164 LEU165 LYS166 ASN167 GLN168 THR169 GLN170 GLU171 TRP172 SER173 GLY174 SER175 GLY176 THR177 LEU178 THR179 LYS180 ASP181 GLY182 LYS183 VAL184 ARG185 LEU186 PHE187 TYR188 THR189 ASP190 TYR191 SER192 GLY193 LYS194 GLN195 TYR196 GLY197 LYS198 GLN199 THR200 LEU201 THR202 THR203 ALA204 GLN205 VAL206 ASN207 MET208 SER209 GLN210 PRO211 ASN212 ASP213 ASN214 THR215 LEU216 LYS217 VAL218 ASP219 GLY220 VAL221 GLU222 ASP223 TYR224 LYS225 SER226 ILE227 PHE228 ASP229 GLY230 ASP231 GLY232 LYS233 ILE234 TYR235 GLN236 THR237 VAL238 GLN239 GLN240 PHE241 ILE242 ASP243 GLU244 GLY245 GLY246 TYR247 ASP248 THR249 GLY250 ASP251 ASN252 HIS253 THR254 LEU255 ARG256 ASP257 PRO258 HIS259 TYR260 ILE261 GLU262 ASP263 ASN264 GLY265 HIS266 LYS267 TYR268 LEU269 VAL270 PHE271 GLU272 ALA273 ASN274 THR275 GLY276 THR277 GLU278 ASP279 GLY280 TYR281 GLN282 GLY283 GLU284 ASP285 SER286 LEU287 TYR288 ASN289 ARG290 ALA291 TYR292 TYR293 GLY294 GLY295 ASN296 ASN297 PRO298 PHE299 PHE300 GLN301 SER302 GLU303 LYS304 LYS305 LYS306 LEU307 LEU308 GLU309 GLY310 SER311 ASN312 LYS313 GLU314 LYS315 ALA316 SER317 LEU318 ALA319 ASN320 GLY321 ALA322 LEU323 GLY324 ILE325 ILE326 GLU327 LEU328 ASN329 ASP330 ASP331 TYR332 THR333 LEU334 LYS335 LYS336 VAL337 MET338 LYS339 PRO340 LEU341 ILE342 THR343 SER344 ASN345 THR346 VAL347 THR348 ASP349 GLU350 ILE351 GLU352 ARG353 ALA354 ASN355 ILE356 PHE357 LYS358 LYS359 ASP360 GLY361 LYS362 TRP363 TYR364 LEU365 PHE366 THR367 ASP368 SER369 ARG370 GLY371 SER372 ALA373 MET374 THR375 ILE376 ASP377 GLY378 ILE379 GLY380 GLN381 ASP382 ASP383 VAL384 TYR385 MET386 LEU387 GLY388 TYR389 VAL390 SER391 ASN392 THR393 LEU394 THR395 GLY396 LYS397 TYR398 LYS399 PRO400 LEU401 ASN402 ASP403 THR404 GLY405 LEU406 VAL407 LEU408 HIS409 MET410 ASP411 LEU412 ASP413 PRO414 ASN415 ASP416 LYS417 THR418 PHE419 THR420 TYR421 SER422 HIS423 PHE424 ALA425 VAL426 PRO427 GLN428 THR429 LYS430 GLY431 ASP432 ASN433 VAL434 VAL435 ILE436 THR437 SER438 TYR439 MET440 THR441 ASN442 ARG443 GLY444 PHE445 TYR446 GLU447 ASP448 ASN449 HIS450 SER451 THR452 PHE453 ALA454 PRO455 SER456 PHE457 LEU458 VAL459 ASN460 ILE461 ASP462 GLY463 SER464 LYS465 THR466 SER467 VAL468 VAL469 LYS470 ASP471 ARG472 VAL473 LEU474 GLU475 GLN476 GLY477 GLN478 LEU479 THR480 VAL481
Unit 2 SER34 LYS35 ASP36 PHE37 ASN38 ASN39 SER40 TYR41 GLY42 ILE43 SER44 HIS45 ILE46 THR47 ARG48 ASP49 ASN50 MET51 VAL52 LYS53 ILE54 PRO55 GLN56 GLN57 GLN58 ASN59 SER60 ASP61 GLN62 PHE63 LYS64 VAL65 PRO66 ALA67 PHE68 ASP69 GLU70 SER71 THR72 ILE73 LYS74 ASN75 ILE76 ALA77 SER78 ALA79 LYS80 GLY81 LYS82 ASN83 ALA84 SER85 GLY86 ASN87 THR88 ILE89 ASP90 LEU91 ASP92 VAL93 TRP94 ASP95 SER96 TRP97 PRO98 LEU99 GLN100 ASN101 ALA102 ASP103 GLY104 THR105 VAL106 ALA107 THR108 TYR109 HIS110 GLY111 TYR112 GLN113 ILE114 VAL115 PHE116 ALA117 LEU118 ALA119 GLY120 ASP121 PRO122 LYS123 ASP124 SER125 ASN126 ASP127 THR128 SER129 VAL130 TYR131 LEU132 PHE133 TYR134 LYS135 LYS136 ALA137 GLY138 ASP139 LYS140 SER141 ILE142 ASP143 SER144 TRP145 LYS146 ASN147 ALA148 GLY149 ARG150 VAL151 PHE152 LYS153 ASP154 SER155 ASP156 LYS157 PHE158 VAL159 PRO160 ASN161 ASP162 PRO163 HIS164 LEU165 LYS166 ASN167 GLN168 THR169 GLN170 GLU171 TRP172 SER173 GLY174 SER175 GLY176 THR177 LEU178 THR179 LYS180 ASP181 GLY182 LYS183 VAL184 ARG185 LEU186 PHE187 TYR188 THR189 ASP190 TYR191 SER192 GLY193 LYS194 GLN195 TYR196 GLY197 LYS198 GLN199 THR200 LEU201 THR202 THR203 ALA204 GLN205 VAL206 ASN207 MET208 SER209 GLN210 PRO211 ASN212 ASP213 ASN214 THR215 LEU216 LYS217 VAL218 ASP219 GLY220 VAL221 GLU222 ASP223 TYR224 LYS225 SER226 ILE227 PHE228 ASP229 GLY230 ASP231 GLY232 LYS233 ILE234 TYR235 GLN236 THR237 VAL238 GLN239 GLN240 PHE241 ILE242 ASP243 GLU244 GLY245 GLY246 TYR247 ASP248 THR249 GLY250 ASP251 ASN252 HIS253 THR254 LEU255 ARG256 ASP257 PRO258 HIS259 TYR260 ILE261 GLU262 ASP263 ASN264 GLY265 HIS266 LYS267 TYR268 LEU269 VAL270 PHE271 GLU272 ALA273 ASN274 THR275 GLY276 THR277 GLU278 ASP279 GLY280 TYR281 GLN282 GLY283 GLU284 ASP285 SER286 LEU287 TYR288 ASN289 ARG290 ALA291 TYR292 TYR293 GLY294 GLY295 ASN296 ASN297 PRO298 PHE299 PHE300 GLN301 SER302 GLU303 LYS304 LYS305 LYS306 LEU307 LEU308 GLU309 GLY310 SER311 ASN312 LYS313 GLU314 LYS315 ALA316 SER317 LEU318 ALA319 ASN320 GLY321 ALA322 LEU323 GLY324 ILE325 ILE326 GLU327 LEU328 ASN329 ASP330 ASP331 TYR332 THR333 LEU334 LYS335 LYS336 VAL337 MET338 LYS339 PRO340 LEU341 ILE342 THR343 SER344 ASN345 THR346 VAL347 THR348 ASP349 GLU350 ILE351 GLU352 ARG353 ALA354 ASN355 ILE356 PHE357 LYS358 LYS359 ASP360 GLY361 LYS362 TRP363 TYR364 LEU365 PHE366 THR367 ASP368 SER369 ARG370 GLY371 SER372 ALA373 MET374 THR375 ILE376 ASP377 GLY378 ILE379 GLY380 GLN381 ASP382 ASP383 VAL384 TYR385 MET386 LEU387 GLY388 TYR389 VAL390 SER391 ASN392 THR393 LEU394 THR395 GLY396 LYS397 TYR398 LYS399 PRO400 LEU401 ASN402 ASP403 THR404 GLY405 LEU406 VAL407 LEU408 HIS409 MET410 ASP411 LEU412 ASP413 PRO414 ASN415 ASP416 LYS417 THR418 PHE419 THR420 TYR421 SER422 HIS423 PHE424 ALA425 VAL426 PRO427 GLN428 THR429 LYS430 GLY431 ASP432 ASN433 VAL434 VAL435 ILE436 THR437 SER438 TYR439 MET440 THR441 ASN442 ARG443 GLY444 PHE445 TYR446 GLU447 ASP448 ASN449 HIS450 SER451 THR452 PHE453 ALA454 PRO455 SER456 PHE457 LEU458 VAL459 ASN460 ILE461 ASP462 GLY463 SER464 LYS465 THR466 SER467 VAL468 VAL469 LYS470 ASP471 ARG472 VAL473 LEU474 GLU475 GLN476 GLY477 GLN478 LEU479 THR480 VAL481
Unit 3 SER34 LYS35 ASP36 PHE37 ASN38 ASN39 SER40 TYR41 GLY42 ILE43 SER44 HIS45 ILE46 THR47 ARG48 ASP49 ASN50 MET51 VAL52 LYS53 ILE54 PRO55 GLN56 GLN57 GLN58 ASN59 SER60 ASP61 GLN62 PHE63 LYS64 VAL65 PRO66 ALA67 PHE68 ASP69 GLU70 SER71 THR72 ILE73 LYS74 ASN75 ILE76 ALA77 SER78 ALA79 LYS80 GLY81 LYS82 ASN83 ALA84 SER85 GLY86 ASN87 THR88 ILE89 ASP90 LEU91 ASP92 VAL93 TRP94 ASP95 SER96 TRP97 PRO98 LEU99 GLN100 ASN101 ALA102 ASP103 GLY104 THR105 VAL106 ALA107 THR108 TYR109 HIS110 GLY111 TYR112 GLN113 ILE114 VAL115 PHE116 ALA117 LEU118 ALA119 GLY120 ASP121 PRO122 LYS123 ASP124 SER125 ASN126 ASP127 THR128 SER129 VAL130 TYR131 LEU132 PHE133 TYR134 LYS135 LYS136 ALA137 GLY138 ASP139 LYS140 SER141 ILE142 ASP143 SER144 TRP145 LYS146 ASN147 ALA148 GLY149 ARG150 VAL151 PHE152 LYS153 ASP154 SER155 ASP156 LYS157 PHE158 VAL159 PRO160 ASN161 ASP162 PRO163 HIS164 LEU165 LYS166 ASN167 GLN168 THR169 GLN170 GLU171 TRP172 SER173 GLY174 SER175 GLY176 THR177 LEU178 THR179 LYS180 ASP181 GLY182 LYS183 VAL184 ARG185 LEU186 PHE187 TYR188 THR189 ASP190 TYR191 SER192 GLY193 LYS194 GLN195 TYR196 GLY197 LYS198 GLN199 THR200 LEU201 THR202 THR203 ALA204 GLN205 VAL206 ASN207 MET208 SER209 GLN210 PRO211 ASN212 ASP213 ASN214 THR215 LEU216 LYS217 VAL218 ASP219 GLY220 VAL221 GLU222 ASP223 TYR224 LYS225 SER226 ILE227 PHE228 ASP229 GLY230 ASP231 GLY232 LYS233 ILE234 TYR235 GLN236 THR237 VAL238 GLN239 GLN240 PHE241 ILE242 ASP243 GLU244 GLY245 GLY246 TYR247 ASP248 THR249 GLY250 ASP251 ASN252 HIS253 THR254 LEU255 ARG256 ASP257 PRO258 HIS259 TYR260 ILE261 GLU262 ASP263 ASN264 GLY265 HIS266 LYS267 TYR268 LEU269 VAL270 PHE271 GLU272 ALA273 ASN274 THR275 GLY276 THR277 GLU278 ASP279 GLY280 TYR281 GLN282 GLY283 GLU284 ASP285 SER286 LEU287 TYR288 ASN289 ARG290 ALA291 TYR292 TYR293 GLY294 GLY295 ASN296 ASN297 PRO298 PHE299 PHE300 GLN301 SER302 GLU303 LYS304 LYS305 LYS306 LEU307 LEU308 GLU309 GLY310 SER311 ASN312 LYS313 GLU314 LYS315 ALA316 SER317 LEU318 ALA319 ASN320 GLY321 ALA322 LEU323 GLY324 ILE325 ILE326 GLU327 LEU328 ASN329 ASP330 ASP331 TYR332 THR333 LEU334 LYS335 LYS336 VAL337 MET338 LYS339 PRO340 LEU341 ILE342 THR343 SER344 ASN345 THR346 VAL347 THR348 ASP349 GLU350 ILE351 GLU352 ARG353 ALA354 ASN355 ILE356 PHE357 LYS358 LYS359 ASP360 GLY361 LYS362 TRP363 TYR364 LEU365 PHE366 THR367 ASP368 SER369 ARG370 GLY371 SER372 ALA373 MET374 THR375 ILE376 ASP377 GLY378 ILE379 GLY380 GLN381 ASP382 ASP383 VAL384 TYR385 MET386 LEU387 GLY388 TYR389 VAL390 SER391 ASN392 THR393 LEU394 THR395 GLY396 LYS397 TYR398 LYS399 PRO400 LEU401 ASN402 ASP403 THR404 GLY405 LEU406 VAL407 LEU408 HIS409 MET410 ASP411 LEU412 ASP413 PRO414 ASN415 ASP416 LYS417 THR418 PHE419 THR420 TYR421 SER422 HIS423 PHE424 ALA425 VAL426 PRO427 GLN428 THR429 LYS430 GLY431 ASP432 ASN433 VAL434 VAL435 ILE436 THR437 SER438 TYR439 MET440 THR441 ASN442 ARG443 GLY444 PHE445 TYR446 GLU447 ASP448 ASN449 HIS450 SER451 THR452 PHE453 ALA454 PRO455 SER456 PHE457 LEU458 VAL459 ASN460 ILE461 ASP462 GLY463 SER464 LYS465 THR466 SER467 VAL468 VAL469 LYS470 ASP471 ARG472 VAL473 LEU474 GLU475 GLN476 GLY477 GLN478 LEU479 THR480 VAL481
Unit 4 SER34 LYS35 ASP36 PHE37 ASN38 ASN39 SER40 TYR41 GLY42 ILE43 SER44 HIS45 ILE46 THR47 ARG48 ASP49 ASN50 MET51 VAL52 LYS53 ILE54 PRO55 GLN56 GLN57 GLN58 ASN59 SER60 ASP61 GLN62 PHE63 LYS64 VAL65 PRO66 ALA67 PHE68 ASP69 GLU70 SER71 THR72 ILE73 LYS74 ASN75 ILE76 ALA77 SER78 ALA79 LYS80 GLY81 LYS82 ASN83 ALA84 SER85 GLY86 ASN87 THR88 ILE89 ASP90 LEU91 ASP92 VAL93 TRP94 ASP95 SER96 TRP97 PRO98 LEU99 GLN100 ASN101 ALA102 ASP103 GLY104 THR105 VAL106 ALA107 THR108 TYR109 HIS110 GLY111 TYR112 GLN113 ILE114 VAL115 PHE116 ALA117 LEU118 ALA119 GLY120 ASP121 PRO122 LYS123 ASP124 SER125 ASN126 ASP127 THR128 SER129 VAL130 TYR131 LEU132 PHE133 TYR134 LYS135 LYS136 ALA137 GLY138 ASP139 LYS140 SER141 ILE142 ASP143 SER144 TRP145 LYS146 ASN147 ALA148 GLY149 ARG150 VAL151 PHE152 LYS153 ASP154 SER155 ASP156 LYS157 PHE158 VAL159 PRO160 ASN161 ASP162 PRO163 HIS164 LEU165 LYS166 ASN167 GLN168 THR169 GLN170 GLU171 TRP172 SER173 GLY174 SER175 GLY176 THR177 LEU178 THR179 LYS180 ASP181 GLY182 LYS183 VAL184 ARG185 LEU186 PHE187 TYR188 THR189 ASP190 TYR191 SER192 GLY193 LYS194 GLN195 TYR196 GLY197 LYS198 GLN199 THR200 LEU201 THR202 THR203 ALA204 GLN205 VAL206 ASN207 MET208 SER209 GLN210 PRO211 ASN212 ASP213 ASN214 THR215 LEU216 LYS217 VAL218 ASP219 GLY220 VAL221 GLU222 ASP223 TYR224 LYS225 SER226 ILE227 PHE228 ASP229 GLY230 ASP231 GLY232 LYS233 ILE234 TYR235 GLN236 THR237 VAL238 GLN239 GLN240 PHE241 ILE242 ASP243 GLU244 GLY245 GLY246 TYR247 ASP248 THR249 GLY250 ASP251 ASN252 HIS253 THR254 LEU255 ARG256 ASP257 PRO258 HIS259 TYR260 ILE261 GLU262 ASP263 ASN264 GLY265 HIS266 LYS267 TYR268 LEU269 VAL270 PHE271 GLU272 ALA273 ASN274 THR275 GLY276 THR277 GLU278 ASP279 GLY280 TYR281 GLN282 GLY283 GLU284 ASP285 SER286 LEU287 TYR288 ASN289 ARG290 ALA291 TYR292 TYR293 GLY294 GLY295 ASN296 ASN297 PRO298 PHE299 PHE300 GLN301 SER302 GLU303 LYS304 LYS305 LYS306 LEU307 LEU308 GLU309 GLY310 SER311 ASN312 LYS313 GLU314 LYS315 ALA316 SER317 LEU318 ALA319 ASN320 GLY321 ALA322 LEU323 GLY324 ILE325 ILE326 GLU327 LEU328 ASN329 ASP330 ASP331 TYR332 THR333 LEU334 LYS335 LYS336 VAL337 MET338 LYS339 PRO340 LEU341 ILE342 THR343 SER344 ASN345 THR346 VAL347 THR348 ASP349 GLU350 ILE351 GLU352 ARG353 ALA354 ASN355 ILE356 PHE357 LYS358 LYS359 ASP360 GLY361 LYS362 TRP363 TYR364 LEU365 PHE366 THR367 ASP368 SER369 ARG370 GLY371 SER372 ALA373 MET374 THR375 ILE376 ASP377 GLY378 ILE379 GLY380 GLN381 ASP382 ASP383 VAL384 TYR385 MET386 LEU387 GLY388 TYR389 VAL390 SER391 ASN392 THR393 LEU394 THR395 GLY396 LYS397 TYR398 LYS399 PRO400 LEU401 ASN402 ASP403 THR404 GLY405 LEU406 VAL407 LEU408 HIS409 MET410 ASP411 LEU412 ASP413 PRO414 ASN415 ASP416 LYS417 THR418 PHE419 THR420 TYR421 SER422 HIS423 PHE424 ALA425 VAL426 PRO427 GLN428 THR429 LYS430 GLY431 ASP432 ASN433 VAL434 VAL435 ILE436 THR437 SER438 TYR439 MET440 THR441 ASN442 ARG443 GLY444 PHE445 TYR446 GLU447 ASP448 ASN449 HIS450 SER451 THR452 PHE453 ALA454 PRO455 SER456 PHE457 LEU458 VAL459 ASN460 ILE461 ASP462 GLY463 SER464 LYS465 THR466 SER467 VAL468 VAL469 LYS470 ASP471 ARG472 VAL473 LEU474 GLU475 GLN476 GLY477 GLN478 LEU479 THR480 VAL481
Ligands
Unit 5 CA1 SO46 PEG485 PGE486
Unit 6 CA1 SO47 PGE485 PGE486
Unit 7 CA1 SO42 SO44 PG4485 PGE486
Unit 8 CA1 SO45 PGE485 SO4486
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany