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Sequence, Chains, Asymmetric and Biological Units

Title PLEXIN A2 IN COMPLEX WITH SEMAPHORIN 6A
Keywords TRANSMEMBRANE, LIGAND, SEMA-DOMAIN, CELL-CELL SIGNALLING, SI PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3OKY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PLEXIN-A2  A 609 4767 0
2  Protein   PUTATIVE UNCHARACTERIZED PROTEIN  B 540 4302 0
3  Ligand    C 2 0 28
4  Ligand   PLEXIN-A2  A 7 0 74
5  Ligand   PUTATIVE UNCHARACTERIZED PROTEIN  B 4 0 40
6 Water     389 0 389
total       1551 9069 531
Proteins
Unit 1 GLN37 TYR38 SER39 THR40 PHE41 HIS42 SER43 GLU44 ASN45 ARG46 ASP47 TRP48 THR49 PHE50 ASN51 HIS52 LEU53 THR54 VAL55 HIS56 ARG57 ARG58 THR59 GLY60 ALA61 VAL62 TYR63 VAL64 GLY65 ALA66 ILE67 ASN68 ARG69 VAL70 TYR71 LYS72 LEU73 THR74 GLY75 ASN76 LEU77 THR78 ILE79 GLN80 VAL81 ALA82 HIS83 LYS84 THR85 GLY86 PRO87 GLU88 GLU89 ASP90 ASN91 LYS92 ALA93 CYS94 TYR95 PRO96 PRO97 LEU98 ILE99 VAL100 GLN101 PRO102 CYS103 SER104 GLU105 VAL106 LEU107 THR108 LEU109 THR110 ASN111 ASN112 VAL113 ASN114 LYS115 LEU116 LEU117 ILE118 ILE119 ASP120 TYR121 SER122 GLU123 ASN124 ARG125 LEU126 LEU127 ALA128 CYS129 GLY130 SER131 LEU132 TYR133 GLN134 GLY135 VAL136 CYS137 LYS138 LEU139 LEU140 ARG141 LEU142 ASP143 ASP144 LEU145 PHE146 ILE147 LEU148 VAL149 GLU150 PRO151 SER152 HIS153 LYS154 LYS155 GLU156 HIS157 TYR158 LEU159 SER160 SER161 VAL162 ASN163 LYS164 THR165 GLY166 THR167 MET168 TYR169 GLY170 VAL171 ILE172 VAL173 ARG174 SER175 GLU176 GLY177 GLU178 ASP179 GLY180 LYS181 LEU182 PHE183 ILE184 GLY185 THR186 ALA187 VAL188 ASP189 GLY190 LYS191 GLN192 ASP193 TYR194 PHE195 PRO196 THR197 LEU198 SER199 SER200 ARG201 LYS202 LEU203 PRO204 ARG205 ASP206 PRO207 GLU208 SER209 SER210 ALA211 MET212 LEU213 ASP214 TYR215 GLU216 LEU217 HIS218 SER219 ASP220 PHE221 VAL222 SER223 SER224 LEU225 ILE226 LYS227 ILE228 PRO229 SER230 ASP231 THR232 LEU233 ALA234 LEU235 VAL236 SER237 HIS238 PHE239 ASP240 ILE241 PHE242 TYR243 ILE244 TYR245 GLY246 PHE247 ALA248 SER249 GLY250 GLY251 PHE252 VAL253 TYR254 PHE255 LEU256 THR257 VAL258 GLN259 PRO260 GLU261 THR262 PRO263 LEU274 PHE275 TYR276 THR277 SER278 ARG279 ILE280 VAL281 ARG282 LEU283 CYS284 LYS285 ASP286 ASP287 PRO288 LYS289 PHE290 HIS291 SER292 TYR293 VAL294 SER295 LEU296 PRO297 PHE298 GLY299 CYS300 THR301 ARG302 ALA303 GLY304 VAL305 GLU306 TYR307 ARG308 LEU309 LEU310 GLN311 ALA312 ALA313 TYR314 LEU315 ALA316 LYS317 PRO318 GLY319 GLU320 ALA321 LEU322 ALA323 GLN324 ALA325 PHE326 ASN327 ILE328 SER329 SER330 ASP331 GLU332 ASP333 VAL334 LEU335 PHE336 ALA337 ILE338 PHE339 SER340 LYS341 GLY342 GLN343 LYS344 GLN345 TYR346 HIS347 HIS348 PRO349 PRO350 ASP351 ASP352 SER353 ALA354 LEU355 CYS356 ALA357 PHE358 PRO359 ILE360 ARG361 ALA362 ILE363 ASN364 LEU365 GLN366 ILE367 LYS368 GLU369 ARG370 LEU371 GLN372 SER373 CYS374 TYR375 HIS376 GLY377 GLU378 GLY379 ASN380 LEU381 GLU382 LEU383 ASN384 TRP385 LEU386 LEU387 GLY388 LYS389 ASP390 VAL391 GLN392 CYS393 THR394 LYS395 ALA396 PRO397 VAL398 PRO399 ILE400 ASP401 ASP402 ASN403 PHE404 CYS405 GLY406 LEU407 ASP408 ILE409 ASN410 GLN411 PRO412 LEU413 GLY414 GLY415 SER416 THR417 PRO418 VAL419 GLU420 GLY421 LEU422 THR423 LEU424 TYR425 THR426 THR427 SER428 ARG429 ASP430 ARG431 LEU432 THR433 SER434 VAL435 ALA436 SER437 TYR438 VAL439 TYR440 ASN441 GLY442 TYR443 SER444 VAL445 VAL446 PHE447 VAL448 GLY449 THR450 LYS451 SER452 GLY453 LYS454 LEU455 LYS456 LYS457 ILE458 ARG459 ALA460 ASP461 GLY462 PRO463 PRO464 HIS465 GLY466 GLY467 VAL468 GLN469 TYR470 GLU471 MET472 VAL473 SER474 VAL475 PHE476 LYS477 ASP478 GLY479 SER480 PRO481 ILE482 LEU483 ARG484 ASP485 MET486 ALA487 PHE488 SER489 ILE490 ASN491 GLN492 LEU493 TYR494 LEU495 TYR496 VAL497 MET498 SER499 GLU500 ARG501 GLN502 VAL503 THR504 ARG505 VAL506 PRO507 VAL508 GLU509 SER510 CYS511 GLU512 GLN513 TYR514 THR515 THR516 CYS517 GLY518 GLU519 CYS520 LEU521 SER522 SER523 GLY524 ASP525 PRO526 HIS527 CYS528 GLY529 TRP530 CYS531 ALA532 LEU533 HIS534 ASN535 MET536 CYS537 SER538 ARG539 ARG540 ASP541 LYS542 CYS543 GLN544 ARG545 ALA546 TRP547 GLU548 ALA549 ASN550 ARG551 PHE552 ALA553 ALA554 SER555 ILE556 SER557 GLN558 CYS559 MET560 SER561 LEU562 GLU563 VAL564 HIS565 PRO566 ASN567 SER568 ILE569 SER570 VAL571 SER572 ASP573 HIS574 SER575 ARG576 LEU577 LEU578 SER579 LEU580 VAL581 VAL582 ASN583 ASP584 ALA585 PRO586 ASN587 LEU588 SER589 GLU590 GLY591 ILE592 ALA593 CYS594 ALA595 PHE596 GLY597 ASN598 LEU599 THR600 GLU601 VAL602 GLU603 GLY604 GLN605 VAL606 SER607 GLY608 SER609 GLN610 VAL611 ILE612 CYS613 ILE614 SER615 PRO616 GLY617 PRO618 LYS619 ASP620 VAL621 PRO622 VAL623 ILE624 PRO625 GLN628 ASP629 TRP630 PHE631 GLY632 LEU633 GLU634 LEU635 GLN636 LEU637 ARG638 SER639 LYS640 GLU641 THR642 GLY643 LYS644 ILE645 PHE646 VAL647 SER648 THR649 GLU650 PHE651 LYS652 PHE653 TYR654 ASN655 CYS656 SER657
Unit 2 PHE20 PRO21 GLU22 ASP23 SER24 GLU25 PRO26 ILE27 SER28 ILE29 SER30 HIS31 GLY32 ASN33 TYR34 THR35 LYS36 GLN37 TYR38 PRO39 VAL40 PHE41 VAL42 GLY43 HIS44 LYS45 PRO46 GLY47 ARG48 THR51 GLN52 ARG53 HIS54 ARG55 LEU56 ASP57 ILE58 GLN59 MET60 ILE61 MET62 ILE63 MET64 ASN65 ARG66 THR67 LEU68 TYR69 VAL70 ALA71 ALA72 ARG73 ASP74 HIS75 ILE76 TYR77 THR78 VAL79 ASP80 ILE81 ASP82 THR83 SER84 HIS85 THR86 GLU87 GLU88 ILE89 TYR90 CYS91 SER92 LYS93 LYS94 LEU95 THR96 TRP97 LYS98 SER99 ARG100 GLN101 ALA102 ASP103 VAL104 ASP105 THR106 CYS107 ARG108 MET109 LYS110 GLY111 LYS112 HIS113 LYS114 ASP115 GLU116 CYS117 HIS118 ASN119 PHE120 ILE121 LYS122 VAL123 LEU124 LEU125 LYS126 LYS127 ASN128 ASP129 ASP130 THR131 LEU132 PHE133 VAL134 CYS135 GLY136 THR137 ASN138 ALA139 PHE140 ASN141 PRO142 SER143 CYS144 ARG145 ASN146 TYR147 ARG148 VAL149 ASP150 THR151 LEU152 GLU153 THR154 PHE155 GLY156 ASP157 GLU158 PHE159 SER160 GLY161 MET162 ALA163 ARG164 CYS165 PRO166 TYR167 ASP168 ALA169 LYS170 HIS171 ALA172 ASN173 ILE174 ALA175 LEU176 PHE177 ALA178 ASP179 GLY180 LYS181 LEU182 TYR183 SER184 ALA185 THR186 VAL187 THR188 ASP189 PHE190 LEU191 ALA192 ILE193 ASP194 ALA195 VAL196 ILE197 TYR198 ARG199 SER200 LEU201 GLY202 ASP203 SER204 PRO205 THR206 LEU207 ARG208 THR209 VAL210 LYS211 HIS212 ASP213 SER214 LYS215 TRP216 LEU217 LYS218 GLU219 PRO220 TYR221 PHE222 VAL223 GLN224 ALA225 VAL226 ASP227 TYR228 GLY229 ASP230 TYR231 ILE232 TYR233 PHE234 PHE235 PHE236 ARG237 GLU238 ILE239 ALA240 VAL241 GLU242 TYR243 ASN244 THR245 MET246 GLY247 LYS248 VAL249 VAL250 PHE251 PRO252 ARG253 VAL254 ALA255 GLN256 VAL257 CYS258 LYS259 ASN260 ASP261 MET262 GLY263 GLY264 SER265 GLN266 ARG267 VAL268 LEU269 GLU270 LYS271 GLN272 TRP273 THR274 SER275 PHE276 LEU277 LYS278 ALA279 ARG280 LEU281 ASN282 CYS283 SER284 VAL285 PRO286 GLY287 ASP288 SER289 HIS290 PHE291 TYR292 PHE293 ASN294 ILE295 LEU296 GLN297 ALA298 VAL299 THR300 ASP301 VAL302 ILE303 ARG304 ILE305 ASN306 GLY307 ARG308 ASP309 VAL310 VAL311 LEU312 ALA313 THR314 PHE315 SER316 THR317 PRO318 TYR319 ASN320 SER321 ILE322 PRO323 GLY324 SER325 ALA326 VAL327 CYS328 ALA329 TYR330 ASP331 MET332 LEU333 ASP334 ILE335 ALA336 ASN337 VAL338 PHE339 THR340 GLY341 ARG342 PHE343 LYS344 GLU345 GLN346 LYS347 SER348 PRO349 ASP350 SER351 THR352 TRP353 THR354 PRO355 VAL356 PRO357 ASP358 GLU359 ARG360 VAL361 PRO362 LYS363 PRO364 ARG365 PRO366 GLY367 CYS368 CYS369 ALA370 GLY371 SER372 SER373 SER374 LEU375 GLU376 LYS377 TYR378 ALA379 THR380 SER381 ASN382 GLU383 PHE384 PRO385 ASP386 ASP387 THR388 LEU389 ASN390 PHE391 ILE392 LYS393 THR394 HIS395 PRO396 LEU397 MET398 ASP399 GLU400 ALA401 VAL402 PRO403 SER404 ILE405 ILE406 ASN407 ARG408 PRO409 TRP410 PHE411 LEU412 ARG413 THR414 MET415 VAL416 ARG417 TYR418 ARG419 LEU420 THR421 LYS422 ILE423 ALA424 VAL425 ASP426 ASN427 ALA428 ALA429 GLY430 PRO431 TYR432 GLN433 ASN434 HIS435 THR436 VAL437 VAL438 PHE439 LEU440 GLY441 SER442 GLU443 LYS444 GLY445 ILE446 ILE447 LEU448 LYS449 PHE450 LEU451 ALA452 ARG453 ILE454 LEU460 ASN461 GLY462 SER463 LEU464 PHE465 LEU466 GLU467 GLU468 MET469 ASN470 VAL471 TYR472 ASN473 PRO474 GLU475 LYS476 CYS477 SER478 TYR479 ASP480 GLY481 VAL482 GLU483 ASP484 LYS485 ARG486 ILE487 MET488 GLY489 MET490 GLN491 LEU492 ASP493 ARG494 ALA495 SER496 GLY497 SER498 LEU499 TYR500 VAL501 ALA502 PHE503 SER504 THR505 CYS506 VAL507 ILE508 LYS509 VAL510 PRO511 LEU512 GLY513 ARG514 CYS515 GLU516 ARG517 HIS518 GLY519 LYS520 CYS521 LYS522 LYS523 THR524 CYS525 ILE526 ALA527 SER528 ARG529 ASP530 PRO531 TYR532 CYS533 GLY534 TRP535 VAL536 ARG537 GLU538 SER539 GLY540 SER541 CYS542 ALA543 HIS544 LEU545 SER546 PRO547 LEU548 SER549 ARG550 LEU551 THR552 PHE553 GLU554 GLN555 ASP556 ILE557 GLU558 ARG559 GLY560 ASN561 THR562 ASP563 GLY566 ASP567 CYS568
Ligands
Unit 3 NAG1 NAG2
Unit 4 NAG1076 NAG1163 NAG1327 NAG1598 GOL2001 GOL2003 GOL2006
Unit 5 NAG1065 NAG1434 GOL2002 GOL2004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany